Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 C 1.53003 * 109.46729 * 119.99628 * 2 1 3 5 5 N 1.46903 * 109.46935 * 175.00392 * 4 2 1 6 6 C 1.46892 * 111.00117 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47486 * 179.97438 * 6 5 4 8 8 C 1.34325 * 126.16691 * 94.94167 * 7 6 5 9 9 O 1.34752 * 107.11720 * 180.02562 * 8 7 6 10 10 C 1.33974 * 107.75151 * 0.02562 * 9 8 7 11 11 C 1.50699 * 125.61592 * 180.02562 * 10 9 8 12 12 C 1.52995 * 117.50090 * 8.72239 * 11 10 9 13 13 C 1.53005 * 117.49695 * 300.06048 * 11 10 9 14 14 N 1.30250 * 108.76338 * 0.02562 * 10 9 8 15 15 N 1.46493 * 109.47519 * 239.99479 * 2 1 3 16 16 C 1.34783 * 119.99865 * 84.99712 * 15 2 1 17 17 O 1.21286 * 119.99672 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00248 * 180.02562 * 16 15 2 19 19 S 1.80995 * 109.47409 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00131 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00125 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00189 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99925 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99638 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47059 * 90.00176 * 24 22 20 26 26 H 1.48503 * 109.46960 * 209.99806 * 24 22 20 27 27 H 1.48498 * 109.47427 * 329.99765 * 24 22 20 28 28 H 1.09004 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47284 * 300.00418 * 1 2 3 30 30 H 1.08994 * 109.46902 * 60.00644 * 1 2 3 31 31 H 1.08990 * 109.47647 * 55.00396 * 4 2 1 32 32 H 1.09002 * 109.47065 * 294.99721 * 4 2 1 33 33 H 1.00900 * 110.99866 * 56.04413 * 5 4 2 34 34 H 1.09007 * 109.47325 * 59.99991 * 6 5 4 35 35 H 1.08993 * 109.47707 * 299.99838 * 6 5 4 36 36 H 1.08003 * 126.44387 * 0.05716 * 8 7 6 37 37 H 1.09003 * 115.54843 * 154.39520 * 11 10 9 38 38 H 1.09003 * 117.50248 * 0.02562 * 12 11 10 39 39 H 1.09004 * 117.50067 * 145.02842 * 12 11 10 40 40 H 1.09003 * 117.49434 * 214.97880 * 13 11 10 41 41 H 1.08997 * 117.50232 * 359.97438 * 13 11 10 42 42 H 0.96996 * 120.00537 * 265.00379 * 15 2 1 43 43 H 1.09002 * 109.47076 * 300.00295 * 18 16 15 44 44 H 1.09000 * 109.47016 * 59.99848 * 18 16 15 45 45 H 0.97003 * 119.99433 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 4.0304 -1.5146 2.3769 7 6 5.5317 -1.6042 2.2810 8 6 6.4131 -0.7477 2.8230 9 8 7.6448 -1.1896 2.5012 10 6 7.5012 -2.3034 1.7707 11 6 8.6249 -3.1290 1.1992 12 6 10.0492 -2.7840 1.6386 13 6 9.5807 -2.4414 0.2221 14 7 6.2304 -2.5550 1.6357 15 7 2.0185 -0.6907 -1.1960 16 6 2.1472 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6490 -0.7289 -3.5876 19 16 2.7107 0.4342 -4.9730 20 6 3.3139 -0.6311 -6.2403 21 1 3.5225 -1.6678 -6.0204 22 6 3.5200 -0.1383 -7.5214 23 7 3.9702 -0.9343 -8.4682 24 14 3.1586 1.6545 -7.9018 25 1 4.3780 2.4671 -7.6611 26 1 2.7486 1.7860 -9.3230 27 1 2.0619 2.1355 -7.0237 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6055 -1.7197 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 3.9279 0.0827 1.0825 34 1 3.6096 -2.5187 2.4312 35 1 3.7558 -0.9569 3.2722 36 1 6.1788 0.1299 3.4074 37 1 8.3934 -4.1793 1.0218 38 1 10.1736 -1.9601 2.3413 39 1 10.7550 -3.6073 1.7497 40 1 9.9783 -3.0394 -0.5978 41 1 9.3964 -1.3920 -0.0077 42 1 2.2492 -1.6318 -1.1525 43 1 3.6482 -1.1214 -3.3984 44 1 1.9762 -1.5508 -3.8324 45 1 4.1146 -0.5897 -9.3634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268678501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = 10.872342 kcal Electronic energy + Delta-G solvation = -25939.311930 eV Core-core repulsion = 22085.626475 eV Total energy + Delta-G solvation = -3853.685455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.62554 -39.42182 -37.65311 -37.20853 -35.45208 -34.06634 -32.38306 -31.57857 -30.44262 -28.53891 -27.09020 -25.55230 -24.59350 -24.19956 -22.84889 -21.85262 -21.53456 -20.48943 -20.21856 -17.85373 -17.63294 -16.95359 -16.74710 -16.40981 -16.08406 -15.39901 -15.28098 -15.14396 -14.90677 -14.68717 -14.43118 -14.07319 -13.84398 -13.30209 -13.20884 -12.78846 -12.74184 -12.72445 -12.33715 -12.23976 -12.02310 -11.99770 -11.79115 -11.65775 -11.21054 -11.09156 -11.00375 -10.96506 -10.92475 -10.72112 -10.51933 -9.80518 -9.38510 -9.04038 -8.95501 -8.81129 -8.73275 -8.42476 -6.84313 -6.23475 -3.94025 1.10592 2.26384 2.39373 2.86504 3.12380 3.30826 3.36124 3.40925 3.54639 3.58772 3.74512 3.92733 4.30158 4.38071 4.39089 4.45051 4.51357 4.63943 4.68475 4.83216 4.94254 5.07752 5.15532 5.16842 5.18626 5.22661 5.27938 5.33109 5.42535 5.44694 5.51309 5.60316 5.64114 5.64748 5.68037 5.89486 5.94385 5.96807 6.12173 6.15864 6.57842 6.75255 6.99819 7.51339 7.82958 7.99976 8.48194 8.66096 9.22974 10.85923 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008535 B = 0.002742 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.760538 B =10210.848326 C =12896.425084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.084 0.916 4 C 0.052 3.948 5 N -0.679 5.679 6 C 0.142 3.858 7 C -0.005 4.005 8 C -0.075 4.075 9 O -0.202 6.202 10 C 0.224 3.776 11 C -0.073 4.073 12 C -0.165 4.165 13 C -0.155 4.155 14 N -0.459 5.459 15 N -0.717 5.717 16 C 0.533 3.467 17 O -0.528 6.528 18 C -0.122 4.122 19 S -0.144 6.144 20 C -0.519 4.519 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.345 0.655 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.213 0.787 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.403 0.597 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -3.465 28.368 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.102 0.898 4 C -0.077 4.077 5 N -0.311 5.311 6 C 0.013 3.987 7 C -0.125 4.125 8 C -0.146 4.146 9 O -0.089 6.089 10 C 0.017 3.983 11 C -0.092 4.092 12 C -0.202 4.202 13 C -0.193 4.193 14 N -0.187 5.187 15 N -0.371 5.371 16 C 0.319 3.681 17 O -0.403 6.403 18 C -0.273 4.273 19 S 0.082 5.918 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.519 5.519 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.230 0.770 37 H 0.164 0.836 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.238 0.762 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.423 -2.603 27.393 27.869 hybrid contribution 0.466 0.147 0.752 0.896 sum 4.888 -2.456 28.145 28.671 Atomic orbital electron populations 1.22157 0.95019 1.02258 1.02733 1.20837 0.93810 0.97303 0.83983 0.89776 1.22312 0.87702 1.01249 0.96467 1.60311 1.05021 1.26202 1.39521 1.20112 0.86427 1.00772 0.91390 1.21583 0.97366 0.93588 0.99953 1.24759 0.80918 1.02613 1.06339 1.84402 1.32485 1.36848 1.55117 1.25153 0.93163 0.85837 0.94154 1.20250 0.85682 0.98148 1.05096 1.23120 0.94381 1.04210 0.98493 1.23173 1.00334 1.02299 0.93539 1.70318 1.01862 1.26487 1.20063 1.45820 1.68342 1.14232 1.08691 1.20221 0.76784 0.87136 0.83960 1.90676 1.49163 1.15830 1.84676 1.23260 1.04522 1.03272 0.96228 1.84719 1.87146 1.17059 1.02875 1.22340 1.50138 0.98811 0.95362 0.89416 1.24715 0.93446 0.98239 0.94964 1.69947 1.43620 1.35764 1.02539 0.86732 0.81093 0.84956 0.79044 1.19271 1.20026 1.15922 0.92343 0.91992 0.91385 0.90083 0.93713 0.83678 0.89086 0.93466 0.77043 0.83613 0.87974 0.87232 0.86879 0.88008 0.76230 0.88542 0.88662 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.15 1.60 2.81 -67.93 -0.19 1.41 16 3 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 4 C 0.05 0.41 5.24 -3.82 -0.02 0.39 16 5 N -0.68 -6.26 6.21 -115.06 -0.72 -6.97 16 6 C 0.14 1.16 6.22 -4.98 -0.03 1.12 16 7 C 0.00 -0.05 6.62 -82.81 -0.55 -0.60 16 8 C -0.07 -0.65 12.08 29.35 0.35 -0.30 16 9 O -0.20 -2.11 10.47 5.34 0.06 -2.05 16 10 C 0.22 2.48 7.83 -12.95 -0.10 2.38 16 11 C -0.07 -0.60 6.33 -91.77 -0.58 -1.18 16 12 C -0.16 -1.00 10.17 -26.69 -0.27 -1.27 16 13 C -0.16 -1.13 10.24 -26.69 -0.27 -1.41 16 14 N -0.46 -5.82 11.29 -7.36 -0.08 -5.90 16 15 N -0.72 -9.63 4.80 -53.80 -0.26 -9.89 16 16 C 0.53 9.80 7.81 -10.99 -0.09 9.72 16 17 O -0.53 -11.54 15.52 5.55 0.09 -11.45 16 18 C -0.12 -2.49 6.16 36.00 0.22 -2.27 16 19 S -0.14 -3.77 18.55 -107.50 -1.99 -5.76 16 20 C -0.52 -15.33 10.04 30.94 0.31 -15.02 16 21 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 22 C 0.09 2.83 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -27.10 13.97 55.49 0.78 -26.32 16 24 Si 0.86 22.21 27.74 -169.99 -4.71 17.50 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.34 3.31 8.72 -39.29 -0.34 2.97 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.21 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.15 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.10 0.64 7.95 -51.93 -0.41 0.23 16 39 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.40 4.81 8.60 -40.82 -0.35 4.46 16 43 H 0.10 1.90 8.14 -51.91 -0.42 1.48 16 44 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 45 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -36.60 399.15 -8.79 -45.39 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.00 Total: 5.03 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.96 Total: -5.59 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.28 Total: -49.08 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.14 Total: -13.50 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.99 Total: -5.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.60 -8.79 -45.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268678501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.260 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds