Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 C 1.53003 * 109.46729 * 119.99628 * 2 1 3 5 5 N 1.46903 * 109.46935 * 175.00392 * 4 2 1 6 6 C 1.46892 * 111.00117 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47486 * 179.97438 * 6 5 4 8 8 C 1.34325 * 126.16691 * 94.94167 * 7 6 5 9 9 O 1.34752 * 107.11720 * 180.02562 * 8 7 6 10 10 C 1.33974 * 107.75151 * 0.02562 * 9 8 7 11 11 C 1.50699 * 125.61592 * 180.02562 * 10 9 8 12 12 C 1.52995 * 117.50090 * 8.72239 * 11 10 9 13 13 C 1.53005 * 117.49695 * 300.06048 * 11 10 9 14 14 N 1.30250 * 108.76338 * 0.02562 * 10 9 8 15 15 N 1.46493 * 109.47519 * 239.99479 * 2 1 3 16 16 C 1.34783 * 119.99865 * 84.99712 * 15 2 1 17 17 O 1.21286 * 119.99672 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00248 * 180.02562 * 16 15 2 19 19 S 1.80995 * 109.47409 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00131 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00125 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00189 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99925 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99638 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47059 * 90.00176 * 24 22 20 26 26 H 1.48503 * 109.46960 * 209.99806 * 24 22 20 27 27 H 1.48498 * 109.47427 * 329.99765 * 24 22 20 28 28 H 1.09004 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47284 * 300.00418 * 1 2 3 30 30 H 1.08994 * 109.46902 * 60.00644 * 1 2 3 31 31 H 1.08990 * 109.47647 * 55.00396 * 4 2 1 32 32 H 1.09002 * 109.47065 * 294.99721 * 4 2 1 33 33 H 1.00900 * 110.99866 * 56.04413 * 5 4 2 34 34 H 1.09007 * 109.47325 * 59.99991 * 6 5 4 35 35 H 1.08993 * 109.47707 * 299.99838 * 6 5 4 36 36 H 1.08003 * 126.44387 * 0.05716 * 8 7 6 37 37 H 1.09003 * 115.54843 * 154.39520 * 11 10 9 38 38 H 1.09003 * 117.50248 * 0.02562 * 12 11 10 39 39 H 1.09004 * 117.50067 * 145.02842 * 12 11 10 40 40 H 1.09003 * 117.49434 * 214.97880 * 13 11 10 41 41 H 1.08997 * 117.50232 * 359.97438 * 13 11 10 42 42 H 0.96996 * 120.00537 * 265.00379 * 15 2 1 43 43 H 1.09002 * 109.47076 * 300.00295 * 18 16 15 44 44 H 1.09000 * 109.47016 * 59.99848 * 18 16 15 45 45 H 0.97003 * 119.99433 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 4.0304 -1.5146 2.3769 7 6 5.5317 -1.6042 2.2810 8 6 6.4131 -0.7477 2.8230 9 8 7.6448 -1.1896 2.5012 10 6 7.5012 -2.3034 1.7707 11 6 8.6249 -3.1290 1.1992 12 6 10.0492 -2.7840 1.6386 13 6 9.5807 -2.4414 0.2221 14 7 6.2304 -2.5550 1.6357 15 7 2.0185 -0.6907 -1.1960 16 6 2.1472 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6490 -0.7289 -3.5876 19 16 2.7107 0.4342 -4.9730 20 6 3.3139 -0.6311 -6.2403 21 1 3.5225 -1.6678 -6.0204 22 6 3.5200 -0.1383 -7.5214 23 7 3.9702 -0.9343 -8.4682 24 14 3.1586 1.6545 -7.9018 25 1 4.3780 2.4671 -7.6611 26 1 2.7486 1.7860 -9.3230 27 1 2.0619 2.1355 -7.0237 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6055 -1.7197 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 3.9279 0.0827 1.0825 34 1 3.6096 -2.5187 2.4312 35 1 3.7558 -0.9569 3.2722 36 1 6.1788 0.1299 3.4074 37 1 8.3934 -4.1793 1.0218 38 1 10.1736 -1.9601 2.3413 39 1 10.7550 -3.6073 1.7497 40 1 9.9783 -3.0394 -0.5978 41 1 9.3964 -1.3920 -0.0077 42 1 2.2492 -1.6318 -1.1525 43 1 3.6482 -1.1214 -3.3984 44 1 1.9762 -1.5508 -3.8324 45 1 4.1146 -0.5897 -9.3634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268678501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = -18.168461 kcal Electronic energy + Delta-G solvation = -25940.571234 eV Core-core repulsion = 22085.626475 eV Total energy + Delta-G solvation = -3854.944758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.35522 -40.75039 -38.30738 -38.00713 -36.35111 -34.97917 -34.67529 -32.74423 -31.24746 -29.96679 -27.85444 -27.76767 -25.25223 -24.92129 -23.37353 -22.69240 -22.43737 -21.52279 -21.14202 -19.88239 -18.38846 -17.94131 -17.69806 -17.60363 -17.10320 -16.78141 -16.45633 -16.23934 -15.97810 -15.74761 -15.58614 -15.05768 -14.97679 -14.75554 -14.60710 -14.11755 -13.93023 -13.36245 -13.35547 -13.28867 -13.01518 -12.99996 -12.93596 -12.71768 -12.57275 -12.50314 -12.44238 -11.88820 -11.84543 -11.63879 -11.56529 -11.48781 -11.17444 -10.92500 -10.54484 -10.03363 -9.71566 -9.36651 -8.99366 -8.51806 -6.22489 0.40344 0.99562 1.30888 1.46729 1.52708 1.56911 1.64060 1.73958 2.24347 2.33039 2.71698 2.73113 2.86136 2.98771 3.22404 3.71769 3.76233 3.79378 3.90957 3.96085 3.99896 4.12444 4.17143 4.25461 4.41137 4.47408 4.48304 4.59720 4.63335 4.70621 4.74806 4.78073 4.79372 4.88857 5.00902 5.05317 5.07520 5.15218 5.24069 5.30074 5.59009 5.70508 5.98747 6.10861 6.30622 6.57248 6.77628 6.93034 7.28438 8.60975 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008535 B = 0.002742 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.760538 B =10210.848326 C =12896.425084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.067 0.933 4 C 0.064 3.936 5 N -0.697 5.697 6 C 0.149 3.851 7 C -0.029 4.029 8 C -0.068 4.068 9 O -0.211 6.211 10 C 0.209 3.791 11 C -0.092 4.092 12 C -0.143 4.143 13 C -0.161 4.161 14 N -0.497 5.497 15 N -0.695 5.695 16 C 0.537 3.463 17 O -0.566 6.566 18 C -0.111 4.111 19 S -0.171 6.171 20 C -0.530 4.530 21 H 0.059 0.941 22 C 0.045 3.955 23 N -0.918 5.918 24 Si 0.916 3.084 25 H -0.262 1.262 26 H -0.257 1.257 27 H -0.236 1.236 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.341 0.659 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.152 0.848 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.413 0.587 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -2.973 30.766 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.085 0.915 4 C -0.065 4.065 5 N -0.329 5.329 6 C 0.020 3.980 7 C -0.149 4.149 8 C -0.139 4.139 9 O -0.097 6.097 10 C 0.003 3.997 11 C -0.110 4.110 12 C -0.180 4.180 13 C -0.199 4.199 14 N -0.227 5.227 15 N -0.347 5.347 16 C 0.322 3.678 17 O -0.445 6.445 18 C -0.262 4.262 19 S 0.055 5.945 20 C -0.678 4.678 21 H 0.077 0.923 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.738 3.262 25 H -0.186 1.186 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.267 0.733 37 H 0.169 0.831 38 H 0.118 0.882 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.105 0.895 42 H 0.249 0.751 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.081 -2.154 29.832 30.187 hybrid contribution 0.575 -0.112 0.143 0.603 sum 4.656 -2.266 29.975 30.419 Atomic orbital electron populations 1.22102 0.93990 1.03054 1.02462 1.21075 0.94559 0.96608 0.83865 0.91520 1.22239 0.86982 1.01833 0.95462 1.60281 1.05721 1.26148 1.40769 1.20129 0.85010 1.00790 0.92047 1.22025 0.98630 0.93725 1.00472 1.25510 0.79997 1.02948 1.05443 1.84408 1.33421 1.36798 1.55111 1.25648 0.93530 0.86233 0.94319 1.20445 0.86136 0.98189 1.06277 1.23207 0.93087 1.04560 0.97183 1.23212 1.00433 1.01581 0.94701 1.70291 1.02894 1.28046 1.21441 1.45689 1.66442 1.14527 1.08031 1.19817 0.76850 0.86538 0.84568 1.90664 1.51325 1.17271 1.85267 1.23256 1.05592 1.02276 0.95078 1.84590 1.86906 1.18647 1.04323 1.22474 1.50274 0.98178 0.96884 0.92321 1.25591 0.93187 1.02444 0.94817 1.70024 1.44520 1.37785 1.03239 0.85842 0.81022 0.79756 0.79585 1.18649 1.18154 1.16031 0.90986 0.89319 0.94609 0.88943 0.90890 0.84076 0.89632 0.90410 0.73342 0.83059 0.88178 0.84863 0.85647 0.89484 0.75065 0.87869 0.87316 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.48 71.98 0.68 -2.14 16 2 C 0.14 2.84 2.81 45.00 0.13 2.97 16 3 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 4 C 0.06 0.80 5.24 86.30 0.45 1.26 16 5 N -0.70 -11.33 6.21 -517.95 -3.22 -14.55 16 6 C 0.15 2.08 6.22 85.56 0.53 2.61 16 7 C -0.03 -0.56 6.62 41.26 0.27 -0.29 16 8 C -0.07 -1.08 12.08 66.93 0.81 -0.27 16 9 O -0.21 -4.27 10.47 -3.79 -0.04 -4.31 16 10 C 0.21 4.66 7.83 88.34 0.69 5.35 16 11 C -0.09 -1.51 6.33 -11.54 -0.07 -1.58 16 12 C -0.14 -1.58 10.17 30.62 0.31 -1.27 16 13 C -0.16 -2.32 10.24 30.62 0.31 -2.00 16 14 N -0.50 -12.60 11.29 -291.98 -3.30 -15.90 16 15 N -0.69 -17.68 4.80 -442.52 -2.12 -19.80 16 16 C 0.54 19.48 7.81 87.65 0.68 20.16 16 17 O -0.57 -24.74 15.52 -3.05 -0.05 -24.79 16 18 C -0.11 -4.52 6.16 71.23 0.44 -4.08 16 19 S -0.17 -8.99 18.55 -56.49 -1.05 -10.04 16 20 C -0.53 -31.99 10.04 67.95 0.68 -31.31 16 21 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 22 C 0.04 2.70 5.50 84.86 0.47 3.17 16 23 N -0.92 -57.11 13.97 21.65 0.30 -56.80 16 24 Si 0.92 45.99 27.74 68.60 1.90 47.90 16 25 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 28 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.34 5.93 8.72 -89.69 -0.78 5.15 16 34 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.25 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.10 1.16 7.95 -2.39 -0.02 1.14 16 39 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.41 9.10 8.60 -92.71 -0.80 8.30 16 43 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 44 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 45 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -81.49 399.15 -1.78 -83.27 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.60 Total: 22.46 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 6.39 Total: -7.43 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -8.34 Total: -107.06 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.09 Total: -29.10 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.90 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -81.49 -1.78 -83.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268678501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.102 kcal (2) G-P(sol) polarization free energy of solvation -81.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds