Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47205 * 2 1 4 4 F 1.39906 * 109.46855 * 119.99756 * 2 1 3 5 5 C 1.50700 * 109.47198 * 239.99673 * 2 1 3 6 6 O 1.21283 * 119.99803 * 315.00101 * 5 2 1 7 7 N 1.34777 * 119.99675 * 135.27976 * 5 2 1 8 8 C 1.46678 * 125.31148 * 179.45048 * 7 5 2 9 9 C 1.54212 * 106.78402 * 161.61574 * 8 7 5 10 10 H 1.08998 * 114.34271 * 263.53409 * 9 8 7 11 11 C 1.51719 * 108.62111 * 135.65607 * 9 8 7 12 12 C 1.47592 * 125.79428 * 86.96444 * 11 9 8 13 13 O 1.21550 * 120.00120 * 359.97438 * 12 11 9 14 14 N 1.34776 * 120.00019 * 179.97438 * 12 11 9 15 15 C 1.47065 * 136.06239 * 359.62837 * 14 12 11 16 16 C 1.53754 * 87.89140 * 152.96346 * 15 14 12 17 17 C 1.50697 * 114.26514 * 139.79612 * 16 15 14 18 18 H 1.07998 * 119.99834 * 266.47204 * 17 16 15 19 19 C 1.37876 * 120.00541 * 86.47681 * 17 16 15 20 20 N 1.31524 * 119.99636 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00479 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47127 * 89.99802 * 21 19 17 23 23 H 1.48501 * 109.47296 * 209.99658 * 21 19 17 24 24 H 1.48503 * 109.47012 * 330.00164 * 21 19 17 25 25 C 1.47073 * 136.05610 * 180.02562 * 14 12 11 26 26 N 1.28974 * 108.41340 * 266.99921 * 11 9 8 27 27 O 1.41376 * 112.89827 * 0.24569 * 26 11 9 28 28 C 1.43979 * 107.63537 * 342.05258 * 27 26 11 29 29 H 1.09004 * 113.75946 * 263.82960 * 28 27 26 30 30 C 1.46600 * 125.31787 * 359.74466 * 7 5 2 31 31 H 1.09000 * 109.47526 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47425 * 300.00334 * 1 2 3 33 33 H 1.08998 * 109.47348 * 60.00234 * 1 2 3 34 34 H 1.09001 * 109.97317 * 281.09389 * 8 7 5 35 35 H 1.08992 * 109.98390 * 42.38542 * 8 7 5 36 36 H 1.08999 * 113.47163 * 267.70151 * 15 14 12 37 37 H 1.09011 * 113.46460 * 38.13144 * 15 14 12 38 38 H 1.09002 * 114.39388 * 272.67308 * 16 15 14 39 39 H 0.96999 * 119.99846 * 180.02562 * 20 19 17 40 40 H 1.08997 * 113.46740 * 321.86129 * 25 14 12 41 41 H 1.08996 * 113.46808 * 92.24596 * 25 14 12 42 42 H 1.09001 * 109.74810 * 300.92826 * 30 7 5 43 43 H 1.09000 * 109.74141 * 61.60112 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9962 -0.6595 1.1424 5 6 2.0323 -0.7105 -1.2304 6 8 1.5342 -1.7633 -1.5685 7 7 3.0389 -0.1786 -1.9518 8 6 3.6243 -0.7740 -3.1578 9 6 4.3791 0.3541 -3.8898 10 1 3.8107 0.8301 -4.6888 11 6 5.7267 -0.1778 -4.3406 12 6 5.9955 -0.8853 -5.6077 13 8 5.0917 -1.0860 -6.3953 14 7 7.2431 -1.3089 -5.8914 15 6 8.5555 -1.2563 -5.2297 16 6 8.9286 -2.5373 -5.9937 17 6 10.3421 -2.5575 -6.5158 18 1 10.5509 -2.2258 -7.5221 19 6 11.3689 -2.9995 -5.7088 20 7 11.1148 -3.4031 -4.4831 21 14 13.1209 -3.0252 -6.3561 22 1 13.7779 -1.7272 -6.0581 23 1 13.8750 -4.1236 -5.7002 24 1 13.1029 -3.2452 -7.8247 25 6 7.8927 -2.0210 -7.0022 26 7 6.5972 0.0926 -3.4282 27 8 6.0410 0.7752 -2.3221 28 6 4.7774 1.3250 -2.7393 29 1 4.8342 2.3673 -3.0532 30 6 3.7236 1.0821 -1.6504 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 4.3156 -1.5703 -2.8819 35 1 2.8362 -1.1698 -3.7981 36 1 9.1520 -0.3903 -5.5167 37 1 8.5027 -1.3930 -4.1495 38 1 8.6418 -3.4610 -5.4911 39 1 11.8372 -3.7137 -3.9151 40 1 7.2752 -2.8095 -7.4324 41 1 8.3137 -1.3566 -7.7567 42 1 3.0035 1.9004 -1.6459 43 1 4.2093 1.0137 -0.6770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272012418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -38.499061 kcal Electronic energy + Delta-G solvation = -29485.396657 eV Core-core repulsion = 25063.357121 eV Total energy + Delta-G solvation = -4422.039535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.27276 -41.66066 -39.82924 -39.31962 -37.29703 -36.55485 -33.68069 -32.80716 -32.64102 -31.15156 -29.66185 -28.87801 -25.94873 -25.63459 -25.08177 -23.62018 -23.15898 -21.84771 -20.25355 -19.99556 -18.72227 -18.41713 -17.26743 -17.09137 -16.89367 -16.52254 -16.31596 -15.89282 -15.46751 -15.42963 -15.01355 -14.81674 -14.62079 -14.48508 -14.26139 -13.61900 -13.50155 -13.27611 -12.96856 -12.84471 -12.81222 -12.55197 -12.38222 -12.37461 -12.21522 -11.98394 -11.63387 -11.60570 -11.40942 -11.09366 -10.97312 -10.84744 -10.42624 -10.23215 -10.03218 -9.94420 -9.36075 -9.22768 -9.17636 -8.63560 -8.12947 -6.21757 -4.28670 0.93318 1.93804 2.23615 2.48534 3.00251 3.18102 3.22194 3.30348 3.32759 3.57522 3.82429 3.92403 3.97777 4.06944 4.13429 4.21831 4.30787 4.37925 4.50200 4.68310 4.77239 4.95572 5.03343 5.10710 5.11258 5.24724 5.30599 5.39231 5.52757 5.55322 5.63241 5.89501 5.97830 6.10457 6.29721 6.46715 6.51825 6.77089 6.81078 6.92444 7.47578 7.50501 7.74834 8.08718 8.10457 8.35268 8.75329 9.38666 10.87824 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.002426 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.074892 B =11539.715695 C =11954.220743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.085 3.915 3 H 0.101 0.899 4 F -0.188 7.188 5 C 0.509 3.491 6 O -0.511 6.511 7 N -0.608 5.608 8 C 0.118 3.882 9 C -0.102 4.102 10 H 0.138 0.862 11 C 0.066 3.934 12 C 0.597 3.403 13 O -0.542 6.542 14 N -0.619 5.619 15 C 0.098 3.902 16 C 0.036 3.964 17 C -0.520 4.520 18 H 0.065 0.935 19 C 0.069 3.931 20 N -0.882 5.882 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.103 3.897 26 N -0.219 5.219 27 O -0.182 6.182 28 C 0.033 3.967 29 H 0.129 0.871 30 C 0.097 3.903 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.265 0.735 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 13.153 7.165 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.045 3.955 3 H 0.119 0.881 4 F -0.169 7.169 5 C 0.295 3.705 6 O -0.384 6.384 7 N -0.344 5.344 8 C -0.005 4.005 9 C -0.124 4.124 10 H 0.156 0.844 11 C -0.130 4.130 12 C 0.382 3.618 13 O -0.420 6.420 14 N -0.351 5.351 15 C -0.024 4.024 16 C 0.017 3.983 17 C -0.558 4.558 18 H 0.083 0.917 19 C -0.135 4.135 20 N -0.518 5.518 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.018 4.018 26 N 0.038 4.962 27 O -0.202 6.202 28 C -0.026 4.026 29 H 0.146 0.854 30 C -0.027 4.027 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.048 12.326 7.366 22.289 hybrid contribution 0.287 0.349 -0.261 0.522 sum -16.761 12.675 7.105 22.183 Atomic orbital electron populations 1.22269 0.91250 1.05321 1.04080 1.21544 0.97230 0.96220 0.80491 0.88089 1.92921 1.90216 1.83286 1.50446 1.20721 0.78946 0.85887 0.84922 1.90776 1.56554 1.21761 1.69336 1.48226 1.34616 1.23602 1.27924 1.21900 0.98289 0.94717 0.85615 1.23419 0.95517 0.95604 0.97876 0.84441 1.26041 0.92748 0.97941 0.96223 1.16341 0.82660 0.79384 0.83400 1.90794 1.44084 1.58289 1.48807 1.50045 1.06483 1.53298 1.25297 1.23917 0.77321 1.01924 0.99248 1.20425 0.93499 0.93321 0.91090 1.20848 0.90311 1.44720 0.99928 0.91672 1.25045 0.99514 0.94143 0.94811 1.69955 1.32907 1.41805 1.07150 0.86512 0.84008 0.77846 0.79192 1.20464 1.21090 1.19653 1.23534 0.92668 0.94147 0.91492 1.78767 1.19654 1.03790 0.93982 1.91309 1.32976 1.67587 1.28329 1.24529 0.85402 0.99368 0.93316 0.85390 1.22062 0.94113 0.86745 0.99747 0.89896 0.90059 0.90189 0.90315 0.88348 0.90249 0.90923 0.91086 0.92481 0.91748 0.90054 0.88850 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.42 37.16 0.35 -0.73 16 2 C 0.08 0.68 4.18 -27.89 -0.12 0.56 16 3 H 0.10 0.45 6.64 -51.93 -0.34 0.11 16 4 F -0.19 -2.04 17.07 2.25 0.04 -2.00 16 5 C 0.51 5.87 7.18 -10.98 -0.08 5.79 16 6 O -0.51 -7.92 16.79 5.55 0.09 -7.83 16 7 N -0.61 -6.39 3.31 -172.43 -0.57 -6.96 16 8 C 0.12 1.46 6.34 -3.31 -0.02 1.44 16 9 C -0.10 -1.15 4.11 -89.18 -0.37 -1.52 16 10 H 0.14 1.28 8.14 -51.93 -0.42 0.85 16 11 C 0.07 1.02 6.21 -79.48 -0.49 0.53 16 12 C 0.60 11.04 8.07 -12.44 -0.10 10.94 16 13 O -0.54 -10.86 17.73 5.32 0.09 -10.77 16 14 N -0.62 -12.16 3.69 -186.28 -0.69 -12.85 16 15 C 0.10 2.05 7.34 -8.38 -0.06 1.99 16 16 C 0.04 0.82 3.79 -91.11 -0.35 0.47 16 17 C -0.52 -12.90 8.83 -34.44 -0.30 -13.20 16 18 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.88 -23.96 13.26 55.43 0.74 -23.22 16 21 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 C 0.10 2.02 8.17 -8.50 -0.07 1.95 16 26 N -0.22 -3.59 10.95 35.28 0.39 -3.20 16 27 O -0.18 -2.51 12.07 -11.36 -0.14 -2.65 16 28 C 0.03 0.30 4.84 -25.04 -0.12 0.18 16 29 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 30 C 0.10 0.70 5.63 -3.74 -0.02 0.68 16 31 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 1.16 7.69 -51.93 -0.40 0.76 16 35 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 37 H 0.07 1.60 7.47 -51.92 -0.39 1.22 16 38 H 0.07 1.78 8.11 -51.93 -0.42 1.36 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 42 H 0.09 0.31 7.79 -51.93 -0.40 -0.09 16 43 H 0.09 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -31.84 370.09 -7.04 -38.89 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.71 Total: -0.57 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -1.85 Total: 10.77 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.14 Total: -46.23 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.05 Total: -21.25 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.84 -7.04 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272012418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.388 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds