Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47056 * 2 1 4 4 F 1.39897 * 109.46744 * 239.99919 * 2 1 3 5 5 C 1.50693 * 109.46872 * 119.99996 * 2 1 3 6 6 O 1.21283 * 120.00346 * 45.00255 * 5 2 1 7 7 N 1.34784 * 119.99987 * 224.99921 * 5 2 1 8 8 C 1.46671 * 125.31529 * 179.72506 * 7 5 2 9 9 C 1.54214 * 106.78436 * 161.61771 * 8 7 5 10 10 H 1.09004 * 114.34452 * 263.53311 * 9 8 7 11 11 C 1.51719 * 108.62028 * 135.65746 * 9 8 7 12 12 C 1.47602 * 125.79539 * 86.99727 * 11 9 8 13 13 O 1.21556 * 119.99738 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00077 * 179.97438 * 12 11 9 15 15 C 1.47066 * 136.05996 * 359.63429 * 14 12 11 16 16 C 1.53753 * 87.88806 * 152.96139 * 15 14 12 17 17 C 1.50696 * 114.26394 * 139.79239 * 16 15 14 18 18 H 1.08005 * 120.00195 * 266.47211 * 17 16 15 19 19 C 1.37874 * 120.00115 * 86.47820 * 17 16 15 20 20 N 1.31520 * 120.00405 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00066 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47192 * 89.99954 * 21 19 17 23 23 H 1.48497 * 109.47200 * 210.00295 * 21 19 17 24 24 H 1.48497 * 109.46919 * 330.00152 * 21 19 17 25 25 C 1.47068 * 136.05435 * 180.02562 * 14 12 11 26 26 N 1.28973 * 108.41769 * 267.00112 * 11 9 8 27 27 O 1.41387 * 112.89161 * 0.24607 * 26 11 9 28 28 C 1.43980 * 107.63670 * 342.05019 * 27 26 11 29 29 H 1.08994 * 113.76092 * 263.83629 * 28 27 26 30 30 C 1.46605 * 125.31533 * 0.02562 * 7 5 2 31 31 H 1.08999 * 109.47297 * 300.00438 * 1 2 3 32 32 H 1.09006 * 109.46838 * 59.99979 * 1 2 3 33 33 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.97675 * 281.10075 * 8 7 5 35 35 H 1.08992 * 109.98427 * 42.38622 * 8 7 5 36 36 H 1.09000 * 113.46586 * 267.69624 * 15 14 12 37 37 H 1.09005 * 113.46458 * 38.13169 * 15 14 12 38 38 H 1.09003 * 114.39545 * 272.67663 * 16 15 14 39 39 H 0.96997 * 120.00052 * 179.97438 * 20 19 17 40 40 H 1.08998 * 113.46728 * 321.85655 * 25 14 12 41 41 H 1.08999 * 113.46884 * 92.24639 * 25 14 12 42 42 H 1.08991 * 109.74769 * 300.93011 * 30 7 5 43 43 H 1.09001 * 109.73982 * 61.59681 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.5342 -1.7632 1.5686 7 7 3.0351 -0.1757 1.9551 8 6 3.6086 -0.7621 3.1711 9 6 4.9824 -0.0942 3.3824 10 1 5.8249 -0.6669 2.9945 11 6 5.1233 0.2709 4.8482 12 6 5.6327 -0.6148 5.9134 13 8 5.9845 -1.7472 5.6457 14 7 5.7089 -0.1677 7.1826 15 6 5.4013 1.0883 7.8831 16 6 5.1712 0.2560 9.1553 17 6 5.7091 0.8867 10.4137 18 1 6.7007 0.6373 10.7616 19 6 4.9353 1.7822 11.1212 20 7 5.4045 2.3323 12.2198 21 14 3.2205 2.2140 10.5193 22 1 2.2360 1.2747 11.1139 23 1 2.8880 3.6028 10.9266 24 1 3.1742 2.1079 9.0388 25 6 6.1426 -0.7190 8.4752 26 7 4.7222 1.4865 5.0058 27 8 4.2836 2.0815 3.8005 28 6 4.8104 1.3006 2.7116 29 1 5.7362 1.6969 2.2945 30 6 3.7188 1.0858 1.6546 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.9590 -0.5619 4.0232 35 1 3.7342 -1.8371 3.0427 36 1 6.2529 1.7648 7.9552 37 1 4.5009 1.5808 7.5160 38 1 4.1567 -0.1274 9.2651 39 1 4.8603 2.9626 12.7172 40 1 5.8737 -1.7663 8.6127 41 1 7.1897 -0.5194 8.7028 42 1 4.1706 1.0330 0.6641 43 1 3.0050 1.9089 1.6902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272012419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -35.172660 kcal Electronic energy + Delta-G solvation = -29611.877755 eV Core-core repulsion = 25189.982463 eV Total energy + Delta-G solvation = -4421.895292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.36340 -41.76957 -39.97311 -39.46930 -37.49809 -36.64770 -33.80617 -32.82459 -32.66120 -31.23973 -29.98397 -29.07652 -26.10591 -25.88378 -25.24621 -23.68087 -23.19472 -21.92373 -20.14191 -20.05806 -18.84308 -18.50056 -17.55303 -17.28122 -16.88060 -16.85117 -16.44988 -15.99119 -15.66101 -15.51029 -15.15054 -14.97525 -14.71297 -14.43442 -14.16615 -13.66659 -13.58704 -13.40737 -13.11986 -12.97417 -12.87740 -12.76451 -12.61074 -12.45365 -12.35727 -12.11882 -11.94342 -11.76631 -11.65788 -11.17469 -10.94569 -10.77420 -10.32128 -10.21907 -10.10010 -10.06544 -9.65035 -9.32490 -9.30299 -8.72019 -8.34046 -6.26636 -4.30535 0.78908 1.87219 2.14499 2.35673 2.85668 3.04735 3.19422 3.28981 3.31103 3.48489 3.72920 3.82064 3.87320 4.00821 4.06374 4.11358 4.27004 4.27526 4.46890 4.60915 4.67850 4.87313 4.90856 5.00087 5.07330 5.14584 5.27113 5.30151 5.41631 5.49561 5.58071 5.63150 5.76666 5.88141 6.11504 6.23281 6.31212 6.37851 6.72830 6.77538 7.03265 7.42910 7.45994 7.91130 8.15702 8.29779 8.76012 9.33898 10.84888 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.002686 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.168806 B =10421.380183 C =10949.508208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.085 3.915 3 H 0.102 0.898 4 F -0.189 7.189 5 C 0.510 3.490 6 O -0.510 6.510 7 N -0.609 5.609 8 C 0.118 3.882 9 C -0.103 4.103 10 H 0.139 0.861 11 C 0.068 3.932 12 C 0.598 3.402 13 O -0.536 6.536 14 N -0.621 5.621 15 C 0.084 3.916 16 C -0.005 4.005 17 C -0.515 4.515 18 H 0.082 0.918 19 C 0.079 3.921 20 N -0.889 5.889 21 Si 0.873 3.127 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.259 1.259 25 C 0.117 3.883 26 N -0.224 5.224 27 O -0.182 6.182 28 C 0.034 3.966 29 H 0.130 0.870 30 C 0.097 3.903 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.268 0.732 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 0.316 -24.572 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.045 3.955 3 H 0.120 0.880 4 F -0.170 7.170 5 C 0.296 3.704 6 O -0.384 6.384 7 N -0.344 5.344 8 C -0.005 4.005 9 C -0.125 4.125 10 H 0.157 0.843 11 C -0.128 4.128 12 C 0.384 3.616 13 O -0.412 6.412 14 N -0.354 5.354 15 C -0.038 4.038 16 C -0.025 4.025 17 C -0.552 4.552 18 H 0.100 0.900 19 C -0.125 4.125 20 N -0.525 5.525 21 Si 0.699 3.301 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.183 1.183 25 C -0.004 4.004 26 N 0.033 4.967 27 O -0.202 6.202 28 C -0.025 4.025 29 H 0.147 0.853 30 C -0.026 4.026 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.007 0.134 -23.949 24.467 hybrid contribution -0.572 -0.043 -0.972 1.129 sum -5.578 0.092 -24.922 25.538 Atomic orbital electron populations 1.22276 0.91168 1.05327 1.04237 1.21554 0.97385 0.96207 0.80334 0.88000 1.92906 1.90216 1.83315 1.50556 1.20721 0.78988 0.85801 0.84903 1.90778 1.55920 1.21958 1.69719 1.48229 1.35469 1.23337 1.27399 1.21890 0.91248 0.99931 0.87430 1.23429 1.00754 0.98286 0.89991 0.84315 1.26042 0.97856 0.92634 0.96263 1.16323 0.79901 0.85502 0.79874 1.90817 1.50951 1.18315 1.81142 1.49965 1.60366 1.19795 1.05276 1.24229 1.00849 0.87461 0.91219 1.20827 0.95954 0.92731 0.93009 1.20702 1.03516 1.25368 1.05643 0.90041 1.24994 0.98103 0.95196 0.94193 1.69883 1.37720 1.29042 1.15847 0.86929 0.84775 0.78104 0.80273 1.20090 1.21093 1.18298 1.23296 1.00655 0.99389 0.77028 1.78722 1.05114 1.08092 1.04751 1.91292 1.71088 1.48028 1.09805 1.24538 0.97943 0.90166 0.89899 0.85265 1.22061 0.95111 0.87055 0.98421 0.90109 0.89990 0.89887 0.90400 0.88322 0.89133 0.91110 0.91917 0.92244 0.91288 0.89310 0.88728 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 9.42 37.16 0.35 -0.76 16 2 C 0.08 0.64 4.18 -27.88 -0.12 0.52 16 3 H 0.10 0.43 6.70 -51.93 -0.35 0.09 16 4 F -0.19 -1.78 17.07 2.25 0.04 -1.75 16 5 C 0.51 5.56 7.18 -10.99 -0.08 5.48 16 6 O -0.51 -7.60 16.79 5.56 0.09 -7.50 16 7 N -0.61 -5.95 3.31 -172.44 -0.57 -6.52 16 8 C 0.12 1.36 6.34 -3.31 -0.02 1.34 16 9 C -0.10 -1.08 4.11 -89.18 -0.37 -1.45 16 10 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 11 C 0.07 0.97 6.21 -79.47 -0.49 0.48 16 12 C 0.60 10.36 8.07 -12.44 -0.10 10.26 16 13 O -0.54 -10.20 17.73 5.32 0.09 -10.10 16 14 N -0.62 -11.37 3.69 -186.26 -0.69 -12.05 16 15 C 0.08 1.62 6.78 -8.37 -0.06 1.57 16 16 C -0.01 -0.12 2.97 -91.12 -0.27 -0.39 16 17 C -0.51 -12.87 9.38 -34.44 -0.32 -13.20 16 18 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 19 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.89 -25.14 13.96 55.43 0.77 -24.36 16 21 Si 0.87 19.78 27.15 -169.99 -4.62 15.16 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.26 -5.56 5.72 56.52 0.32 -5.24 16 25 C 0.12 2.17 8.17 -8.49 -0.07 2.10 16 26 N -0.22 -3.37 10.95 35.28 0.39 -2.98 16 27 O -0.18 -2.27 12.07 -11.37 -0.14 -2.41 16 28 C 0.03 0.28 4.84 -25.04 -0.12 0.16 16 29 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 30 C 0.10 0.63 5.57 -3.75 -0.02 0.61 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 34 H 0.08 1.03 7.69 -51.93 -0.40 0.63 16 35 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.09 1.73 8.10 -51.93 -0.42 1.30 16 37 H 0.07 1.38 6.47 -51.93 -0.34 1.04 16 38 H 0.06 1.33 7.03 -51.93 -0.37 0.96 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.58 8.10 -51.93 -0.42 1.16 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.51 7.81 -51.93 -0.41 0.10 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -32.18 364.46 -6.62 -38.80 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.70 Total: -0.48 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -1.79 Total: 8.71 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.10 Total: -45.92 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.05 Total: -20.01 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.62 Total: 15.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.18 -6.62 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272012419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.623 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds