Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46669 * 2 1 4 4 C 1.53001 * 109.46819 * 119.99693 * 2 1 3 5 5 N 1.46502 * 109.46822 * 175.00141 * 4 2 1 6 6 C 1.46498 * 120.00044 * 90.00063 * 5 4 2 7 7 C 1.36937 * 119.99822 * 269.99932 * 5 4 2 8 8 H 1.07999 * 120.00027 * 334.64759 * 7 5 4 9 9 C 1.38818 * 119.99802 * 154.64907 * 7 5 4 10 10 N 1.31618 * 119.99903 * 3.86848 * 9 7 5 11 11 Si 1.86800 * 119.99547 * 183.86582 * 9 7 5 12 12 H 1.48496 * 109.47372 * 90.00305 * 11 9 7 13 13 H 1.48506 * 109.46573 * 209.99724 * 11 9 7 14 14 H 1.48498 * 109.47266 * 329.99623 * 11 9 7 15 15 N 1.46495 * 109.46824 * 239.99521 * 2 1 3 16 16 C 1.34777 * 119.99644 * 85.00501 * 15 2 1 17 17 O 1.21634 * 120.00385 * 359.97438 * 16 15 2 18 18 C 1.47264 * 119.99766 * 179.97438 * 16 15 2 19 19 C 1.35214 * 123.14318 * 180.02562 * 18 16 15 20 20 S 1.70943 * 108.82706 * 179.97438 * 19 18 16 21 21 C 1.70762 * 91.13030 * 0.02562 * 20 19 18 22 22 C 1.50708 * 124.72018 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.86851 * 164.27267 * 22 21 20 24 24 C 1.54101 * 109.87406 * 285.27897 * 22 21 20 25 25 C 1.54807 * 104.18567 * 121.45304 * 24 22 21 26 26 C 1.54992 * 102.09340 * 20.87831 * 25 24 22 27 27 O 1.43745 * 109.87578 * 43.26354 * 22 21 20 28 28 N 1.28652 * 110.56177 * 359.76100 * 21 20 19 29 29 H 1.09007 * 109.47400 * 300.00011 * 1 2 3 30 30 H 1.09004 * 109.47399 * 60.00203 * 1 2 3 31 31 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47175 * 54.99927 * 4 2 1 33 33 H 1.09001 * 109.47121 * 295.00105 * 4 2 1 34 34 H 1.09001 * 109.47324 * 264.45723 * 6 5 4 35 35 H 1.08998 * 109.47042 * 144.45437 * 6 5 4 36 36 H 1.09004 * 109.47089 * 24.45785 * 6 5 4 37 37 H 0.96996 * 119.99876 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00045 * 264.99570 * 15 2 1 39 39 H 1.07999 * 125.58346 * 0.02562 * 19 18 16 40 40 H 1.08998 * 110.48356 * 240.12806 * 24 22 21 41 41 H 1.08999 * 110.49169 * 2.77302 * 24 22 21 42 42 H 1.09009 * 110.90498 * 139.07493 * 25 24 22 43 43 H 1.08998 * 110.91001 * 262.64293 * 25 24 22 44 44 H 1.08999 * 110.61779 * 81.47784 * 26 25 24 45 45 H 1.09001 * 110.61965 * 204.46855 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3343 0.2341 1.7613 7 6 4.0849 -1.9158 0.6024 8 1 3.5518 -2.8537 0.5524 9 6 5.3631 -1.8147 0.0704 10 7 6.0425 -0.6947 0.1985 11 14 6.1187 -3.2683 -0.8272 12 1 5.7804 -3.1888 -2.2709 13 1 7.5943 -3.2390 -0.6623 14 1 5.5824 -4.5323 -0.2618 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8574 1.1617 -2.4119 18 6 2.6383 -0.7125 -3.5593 19 6 2.7923 -0.1006 -4.7552 20 16 3.3802 -1.2398 -5.8861 21 6 3.3859 -2.4666 -4.6983 22 6 3.8154 -3.8912 -4.9377 23 1 3.9910 -4.3903 -3.9848 24 6 2.7260 -4.6408 -5.7290 25 6 3.4508 -5.1227 -7.0092 26 6 4.9380 -5.0844 -6.5743 27 8 5.0148 -3.9135 -5.7296 28 7 2.9779 -2.0042 -3.5692 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -1.7198 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 4.6216 0.9329 0.9756 35 1 5.2292 -0.2051 2.2020 36 1 3.7727 0.7637 2.5310 37 1 6.9355 -0.6240 -0.1736 38 1 2.2490 -1.6318 -1.1525 39 1 2.5795 0.9378 -4.9618 40 1 2.3562 -5.4915 -5.1567 41 1 1.9081 -3.9670 -5.9843 42 1 3.1476 -6.1369 -7.2694 43 1 3.2700 -4.4396 -7.8391 44 1 5.1959 -5.9802 -6.0095 45 1 5.5889 -4.9758 -7.4418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275559556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -10.361705 kcal Electronic energy + Delta-G solvation = -28395.926924 eV Core-core repulsion = 24541.320692 eV Total energy + Delta-G solvation = -3854.606232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28231 -39.47108 -38.19234 -36.19140 -33.91738 -32.47998 -31.62628 -31.18418 -29.95000 -28.68161 -26.10327 -25.56070 -25.38174 -23.52822 -22.19691 -21.58434 -20.83456 -19.85799 -19.46865 -18.46238 -16.75947 -16.63247 -16.28487 -16.10413 -15.33441 -15.30684 -14.90980 -14.76821 -14.12843 -13.93008 -13.83548 -13.52934 -13.25089 -13.03632 -12.91313 -12.77813 -12.21975 -12.03151 -11.95615 -11.78450 -11.66438 -11.53460 -11.36718 -11.11419 -11.05363 -10.80762 -10.63414 -10.33291 -10.14974 -10.12850 -9.99421 -9.77229 -9.61643 -9.46736 -9.43228 -8.73512 -8.44074 -8.18843 -6.67936 -5.67651 -3.13760 0.69401 1.37768 1.80430 2.29098 3.43410 3.44976 3.48253 3.53303 3.88952 3.99222 4.16904 4.28270 4.55519 4.60889 4.67841 4.98946 5.00072 5.22538 5.38024 5.40220 5.41537 5.48171 5.50330 5.59278 5.63445 5.68135 5.71085 5.77721 5.90764 6.03289 6.11676 6.22550 6.30344 6.50719 6.55577 6.59130 6.83532 6.94207 7.29622 7.54435 7.65047 7.81127 7.92262 8.37638 8.46942 8.93249 9.30953 9.92482 10.42668 11.36855 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.004814 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.653909 B = 5814.945469 C = 7233.756515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.077 0.923 4 C 0.143 3.857 5 N -0.601 5.601 6 C 0.167 3.833 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.016 3.984 10 N -0.903 5.903 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.294 1.294 14 H -0.281 1.281 15 N -0.665 5.665 16 C 0.592 3.408 17 O -0.558 6.558 18 C 0.029 3.971 19 C -0.235 4.235 20 S 0.214 5.786 21 C 0.020 3.980 22 C 0.155 3.845 23 H 0.103 0.897 24 C -0.146 4.146 25 C -0.155 4.155 26 C 0.044 3.956 27 O -0.364 6.364 28 N -0.418 5.418 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.052 0.948 36 H -0.010 1.010 37 H 0.251 0.749 38 H 0.413 0.587 39 H 0.188 0.812 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -7.278 -14.159 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.324 5.324 6 C 0.023 3.977 7 C -0.384 4.384 8 H 0.084 0.916 9 C -0.183 4.183 10 N -0.547 5.547 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.221 1.221 14 H -0.206 1.206 15 N -0.314 5.314 16 C 0.375 3.625 17 O -0.438 6.438 18 C -0.107 4.107 19 C -0.377 4.377 20 S 0.471 5.529 21 C -0.259 4.259 22 C 0.093 3.907 23 H 0.121 0.879 24 C -0.185 4.185 25 C -0.193 4.193 26 C -0.033 4.033 27 O -0.283 6.283 28 N -0.134 5.134 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.009 0.991 37 H 0.061 0.939 38 H 0.251 0.749 39 H 0.205 0.795 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.672 -6.588 -14.726 17.864 hybrid contribution 0.367 -0.721 0.289 0.859 sum -7.305 -7.308 -14.437 17.754 Atomic orbital electron populations 1.22155 0.96749 1.01329 1.01560 1.21928 0.91915 0.98446 0.86944 0.90441 1.21186 0.86125 0.97843 0.93399 1.43877 0.98809 1.22515 1.67197 1.20864 0.92966 0.90145 0.93730 1.19029 0.99177 0.89047 1.31133 0.91633 1.25071 0.98156 0.96432 0.98632 1.70082 1.11728 1.25097 1.47843 0.86473 0.78143 0.82189 0.81220 1.20318 1.22093 1.20634 1.45596 1.63079 1.14895 1.07792 1.16952 0.77766 0.85601 0.82225 1.90731 1.52847 1.15006 1.85176 1.20561 1.05406 0.89026 0.95695 1.26629 1.06919 1.06852 0.97265 1.82575 1.56714 0.99405 1.14220 1.26790 1.05398 1.01141 0.92597 1.21042 0.85177 0.87678 0.96784 0.87922 1.23041 0.98233 1.00958 0.96228 1.23169 0.95452 1.02670 0.97977 1.23670 0.96529 0.88848 0.94251 1.89025 1.38461 1.45611 1.55168 1.66830 1.11416 1.11547 1.23610 0.92132 0.92969 0.92953 0.93369 0.92914 0.95828 0.92941 0.99127 0.93895 0.74914 0.79517 0.89286 0.89925 0.89656 0.90175 0.91548 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.48 37.16 0.35 -2.17 16 2 C 0.12 2.29 2.88 -67.93 -0.20 2.09 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 4 C 0.14 2.89 5.36 -4.04 -0.02 2.87 16 5 N -0.60 -15.02 2.82 -181.11 -0.51 -15.53 16 6 C 0.17 4.27 8.99 59.85 0.54 4.81 16 7 C -0.25 -6.83 8.01 -15.06 -0.12 -6.95 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 C 0.02 0.45 5.38 -17.43 -0.09 0.35 16 10 N -0.90 -26.86 10.13 55.49 0.56 -26.30 16 11 Si 0.89 22.35 29.56 -169.99 -5.02 17.33 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 N -0.67 -14.15 4.48 -54.93 -0.25 -14.40 16 16 C 0.59 13.01 7.76 -12.59 -0.10 12.91 16 17 O -0.56 -13.17 16.38 5.25 0.09 -13.08 16 18 C 0.03 0.57 6.70 -84.52 -0.57 0.00 16 19 C -0.23 -3.90 10.62 29.66 0.31 -3.58 16 20 S 0.21 2.93 22.72 -107.50 -2.44 0.49 16 21 C 0.02 0.33 6.10 -13.61 -0.08 0.25 16 22 C 0.15 2.16 3.94 -27.30 -0.11 2.05 16 23 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 24 C -0.15 -1.39 6.63 -25.20 -0.17 -1.56 16 25 C -0.15 -1.14 7.16 -24.73 -0.18 -1.32 16 26 C 0.04 0.40 7.72 38.21 0.29 0.69 16 27 O -0.36 -5.12 11.01 -35.23 -0.39 -5.51 16 28 N -0.42 -8.09 10.12 -8.51 -0.09 -8.18 16 29 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 33 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 34 H 0.02 0.66 7.43 -51.93 -0.39 0.28 16 35 H 0.05 1.44 7.04 -51.93 -0.37 1.07 16 36 H -0.01 -0.22 7.83 -51.93 -0.41 -0.63 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.41 9.02 6.92 -40.82 -0.28 8.74 16 39 H 0.19 2.81 8.03 -52.49 -0.42 2.39 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 42 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -33.71 383.11 -9.24 -42.95 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.83 Total: 6.01 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -0.13 Total: 10.46 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -0.28 Total: -64.41 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.30 Total: -18.59 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.44 Total: 0.49 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.71 -9.24 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275559556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.583 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds