Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46669 * 2 1 4 4 C 1.53001 * 109.46819 * 119.99693 * 2 1 3 5 5 N 1.46502 * 109.46822 * 175.00141 * 4 2 1 6 6 C 1.46498 * 120.00044 * 90.00063 * 5 4 2 7 7 C 1.36937 * 119.99822 * 269.99932 * 5 4 2 8 8 H 1.07999 * 120.00027 * 334.64759 * 7 5 4 9 9 C 1.38818 * 119.99802 * 154.64907 * 7 5 4 10 10 N 1.31618 * 119.99903 * 3.86848 * 9 7 5 11 11 Si 1.86800 * 119.99547 * 183.86582 * 9 7 5 12 12 H 1.48496 * 109.47372 * 90.00305 * 11 9 7 13 13 H 1.48506 * 109.46573 * 209.99724 * 11 9 7 14 14 H 1.48498 * 109.47266 * 329.99623 * 11 9 7 15 15 N 1.46495 * 109.46824 * 239.99521 * 2 1 3 16 16 C 1.34777 * 119.99644 * 85.00501 * 15 2 1 17 17 O 1.21634 * 120.00385 * 359.97438 * 16 15 2 18 18 C 1.47264 * 119.99766 * 179.97438 * 16 15 2 19 19 C 1.35214 * 123.14318 * 180.02562 * 18 16 15 20 20 S 1.70943 * 108.82706 * 179.97438 * 19 18 16 21 21 C 1.70762 * 91.13030 * 0.02562 * 20 19 18 22 22 C 1.50708 * 124.72018 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.86851 * 164.27267 * 22 21 20 24 24 C 1.54101 * 109.87406 * 285.27897 * 22 21 20 25 25 C 1.54807 * 104.18567 * 121.45304 * 24 22 21 26 26 C 1.54992 * 102.09340 * 20.87831 * 25 24 22 27 27 O 1.43745 * 109.87578 * 43.26354 * 22 21 20 28 28 N 1.28652 * 110.56177 * 359.76100 * 21 20 19 29 29 H 1.09007 * 109.47400 * 300.00011 * 1 2 3 30 30 H 1.09004 * 109.47399 * 60.00203 * 1 2 3 31 31 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47175 * 54.99927 * 4 2 1 33 33 H 1.09001 * 109.47121 * 295.00105 * 4 2 1 34 34 H 1.09001 * 109.47324 * 264.45723 * 6 5 4 35 35 H 1.08998 * 109.47042 * 144.45437 * 6 5 4 36 36 H 1.09004 * 109.47089 * 24.45785 * 6 5 4 37 37 H 0.96996 * 119.99876 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00045 * 264.99570 * 15 2 1 39 39 H 1.07999 * 125.58346 * 0.02562 * 19 18 16 40 40 H 1.08998 * 110.48356 * 240.12806 * 24 22 21 41 41 H 1.08999 * 110.49169 * 2.77302 * 24 22 21 42 42 H 1.09009 * 110.90498 * 139.07493 * 25 24 22 43 43 H 1.08998 * 110.91001 * 262.64293 * 25 24 22 44 44 H 1.08999 * 110.61779 * 81.47784 * 26 25 24 45 45 H 1.09001 * 110.61965 * 204.46855 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3343 0.2341 1.7613 7 6 4.0849 -1.9158 0.6024 8 1 3.5518 -2.8537 0.5524 9 6 5.3631 -1.8147 0.0704 10 7 6.0425 -0.6947 0.1985 11 14 6.1187 -3.2683 -0.8272 12 1 5.7804 -3.1888 -2.2709 13 1 7.5943 -3.2390 -0.6623 14 1 5.5824 -4.5323 -0.2618 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3571 17 8 1.8574 1.1617 -2.4119 18 6 2.6383 -0.7125 -3.5593 19 6 2.7923 -0.1006 -4.7552 20 16 3.3802 -1.2398 -5.8861 21 6 3.3859 -2.4666 -4.6983 22 6 3.8154 -3.8912 -4.9377 23 1 3.9910 -4.3903 -3.9848 24 6 2.7260 -4.6408 -5.7290 25 6 3.4508 -5.1227 -7.0092 26 6 4.9380 -5.0844 -6.5743 27 8 5.0148 -3.9135 -5.7296 28 7 2.9779 -2.0042 -3.5692 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -1.7198 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 4.6216 0.9329 0.9756 35 1 5.2292 -0.2051 2.2020 36 1 3.7727 0.7637 2.5310 37 1 6.9355 -0.6240 -0.1736 38 1 2.2490 -1.6318 -1.1525 39 1 2.5795 0.9378 -4.9618 40 1 2.3562 -5.4915 -5.1567 41 1 1.9081 -3.9670 -5.9843 42 1 3.1476 -6.1369 -7.2694 43 1 3.2700 -4.4396 -7.8391 44 1 5.1959 -5.9802 -6.0095 45 1 5.5889 -4.9758 -7.4418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275559556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -34.029849 kcal Electronic energy + Delta-G solvation = -28396.953251 eV Core-core repulsion = 24541.320692 eV Total energy + Delta-G solvation = -3855.632560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62159 -40.56664 -39.62519 -38.00374 -35.76624 -33.42159 -33.18935 -32.58469 -31.59257 -29.75859 -28.05905 -27.38379 -26.70678 -24.67366 -23.47827 -22.92999 -22.02183 -21.46283 -20.92800 -19.84262 -18.71305 -17.72119 -17.57663 -17.25251 -16.86855 -16.77634 -16.39438 -16.21447 -15.62020 -15.45892 -15.16064 -14.84235 -14.61767 -14.60615 -14.46851 -14.10186 -13.92449 -13.37956 -13.08566 -13.04426 -12.86078 -12.82102 -12.76938 -12.66661 -12.61982 -12.20039 -12.12574 -12.01673 -12.00097 -11.74864 -11.70856 -11.20299 -11.04036 -10.79838 -10.71223 -10.59318 -10.08975 -9.75067 -8.75050 -7.83149 -5.28629 -0.59445 0.17797 0.53714 0.86840 1.38680 1.46171 1.49222 2.18652 2.48011 2.49315 2.57112 3.18346 3.35576 3.47816 3.66127 3.75048 3.84116 4.01269 4.06849 4.14032 4.18551 4.34254 4.41323 4.44369 4.51031 4.68602 4.74690 4.75947 4.80931 4.84802 4.89942 4.90138 4.98953 5.02306 5.14937 5.15459 5.37275 5.40296 5.64242 5.67986 5.74444 5.78528 6.31219 6.35224 6.72864 7.17834 7.26945 7.88571 8.33650 9.20836 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.004814 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.653909 B = 5814.945469 C = 7233.756515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.117 3.883 3 H 0.045 0.955 4 C 0.142 3.858 5 N -0.616 5.616 6 C 0.183 3.817 7 C -0.239 4.239 8 H 0.075 0.925 9 C -0.038 4.038 10 N -0.936 5.936 11 Si 0.943 3.057 12 H -0.286 1.286 13 H -0.305 1.305 14 H -0.263 1.263 15 N -0.668 5.668 16 C 0.583 3.417 17 O -0.587 6.587 18 C -0.008 4.008 19 C -0.243 4.243 20 S 0.313 5.687 21 C -0.001 4.001 22 C 0.149 3.851 23 H 0.079 0.921 24 C -0.140 4.140 25 C -0.143 4.143 26 C 0.033 3.967 27 O -0.394 6.394 28 N -0.452 5.452 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.079 0.921 34 H -0.013 1.013 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.240 0.760 38 H 0.410 0.590 39 H 0.198 0.802 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 -9.124 -15.742 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.064 0.936 4 C 0.016 3.984 5 N -0.338 5.338 6 C 0.038 3.962 7 C -0.369 4.369 8 H 0.092 0.908 9 C -0.233 4.233 10 N -0.584 5.584 11 Si 0.773 3.227 12 H -0.213 1.213 13 H -0.233 1.233 14 H -0.187 1.187 15 N -0.315 5.315 16 C 0.367 3.633 17 O -0.469 6.469 18 C -0.143 4.143 19 C -0.386 4.386 20 S 0.571 5.429 21 C -0.280 4.280 22 C 0.087 3.913 23 H 0.097 0.903 24 C -0.179 4.179 25 C -0.180 4.180 26 C -0.043 4.043 27 O -0.314 6.314 28 N -0.169 5.169 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.005 0.995 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.247 0.753 39 H 0.215 0.785 40 H 0.120 0.880 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.306 -8.479 -16.305 20.600 hybrid contribution 0.850 -0.160 0.728 1.130 sum -8.456 -8.639 -15.577 19.718 Atomic orbital electron populations 1.22022 0.93261 1.02700 1.02366 1.21881 0.94544 0.96333 0.86298 0.93638 1.21399 0.83195 0.99348 0.94502 1.44103 1.00905 1.21787 1.67052 1.20540 0.92816 0.89646 0.93211 1.19300 0.98714 0.89874 1.29052 0.90783 1.25659 0.99193 0.98295 1.00136 1.70270 1.11551 1.26918 1.49637 0.85611 0.76657 0.80778 0.79667 1.21347 1.23279 1.18695 1.45687 1.63017 1.14641 1.08197 1.17356 0.77351 0.85487 0.83119 1.90687 1.54310 1.16072 1.85836 1.20385 1.08133 0.89938 0.95867 1.26966 1.05882 1.08181 0.97539 1.82129 1.53808 0.96072 1.10890 1.27341 1.04656 1.03014 0.93004 1.21131 0.86811 0.86535 0.96785 0.90346 1.23058 0.97014 1.00925 0.96899 1.23178 0.93497 1.04484 0.96880 1.23998 0.98388 0.87557 0.94317 1.88983 1.38745 1.47742 1.55887 1.66792 1.13021 1.11560 1.25525 0.89435 0.94039 0.91232 0.91619 0.90252 0.99505 0.95536 0.95659 0.95057 0.75350 0.78512 0.87975 0.89654 0.86896 0.89182 0.90946 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.48 71.98 0.68 -3.65 16 2 C 0.12 4.58 2.88 44.99 0.13 4.71 16 3 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 4 C 0.14 5.52 5.36 86.38 0.46 5.99 16 5 N -0.62 -30.65 2.82 -726.92 -2.05 -32.70 16 6 C 0.18 9.48 8.99 127.77 1.15 10.63 16 7 C -0.24 -12.85 8.01 84.03 0.67 -12.18 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 9 C -0.04 -2.17 5.38 84.86 0.46 -1.72 16 10 N -0.94 -57.79 10.13 21.65 0.22 -57.57 16 11 Si 0.94 47.17 29.56 68.60 2.03 49.20 16 12 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 13 H -0.31 -15.68 7.11 99.48 0.71 -14.98 16 14 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 15 N -0.67 -28.88 4.48 -445.96 -2.00 -30.88 16 16 C 0.58 26.41 7.76 86.62 0.67 27.09 16 17 O -0.59 -28.68 16.38 -4.14 -0.07 -28.75 16 18 C -0.01 -0.31 6.70 40.56 0.27 -0.04 16 19 C -0.24 -8.01 10.62 67.12 0.71 -7.30 16 20 S 0.31 8.06 22.72 -56.49 -1.28 6.78 16 21 C 0.00 -0.04 6.10 88.58 0.54 0.50 16 22 C 0.15 4.04 3.94 30.22 0.12 4.16 16 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 24 C -0.14 -2.36 6.63 31.58 0.21 -2.15 16 25 C -0.14 -1.61 7.16 31.89 0.23 -1.38 16 26 C 0.03 0.52 7.72 72.66 0.56 1.08 16 27 O -0.39 -10.58 11.01 -148.98 -1.64 -12.22 16 28 N -0.45 -17.76 10.12 -180.83 -1.83 -19.59 16 29 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 33 H 0.08 2.67 7.86 -2.39 -0.02 2.66 16 34 H -0.01 -0.79 7.43 -2.39 -0.02 -0.81 16 35 H 0.03 1.48 7.04 -2.39 -0.02 1.46 16 36 H 0.03 1.11 7.83 -2.38 -0.02 1.09 16 37 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.41 18.12 6.92 -92.71 -0.64 17.48 16 39 H 0.20 5.88 8.03 -2.91 -0.02 5.86 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.39 7.69 -2.39 -0.02 1.37 16 42 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 45 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -76.73 383.11 0.60 -76.13 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.36 Total: 23.89 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 6.87 Total: 25.72 kcal Atomic # 7 Polarization: -135.08 SS G_CDS: -5.66 Total: -140.74 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.71 Total: -40.97 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Atomic # 16 Polarization: 8.06 SS G_CDS: -1.28 Total: 6.78 kcal Total: -76.73 0.60 -76.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275559556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.096 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds