Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 C 1.53002 * 109.47016 * 119.99813 * 2 1 3 5 5 N 1.46500 * 109.46889 * 175.00103 * 4 2 1 6 6 C 1.46506 * 120.00066 * 90.00121 * 5 4 2 7 7 C 1.36935 * 120.00076 * 269.99592 * 5 4 2 8 8 H 1.08000 * 119.99963 * 334.68221 * 7 5 4 9 9 C 1.38818 * 119.99890 * 154.68253 * 7 5 4 10 10 N 1.31618 * 119.99903 * 3.90261 * 9 7 5 11 11 Si 1.86800 * 119.99547 * 183.89995 * 9 7 5 12 12 H 1.48491 * 109.47600 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.46884 * 120.00248 * 11 9 7 14 14 H 1.48507 * 109.46690 * 239.99647 * 11 9 7 15 15 N 1.46501 * 109.47275 * 239.99844 * 2 1 3 16 16 C 1.34775 * 119.99855 * 85.00076 * 15 2 1 17 17 O 1.21628 * 120.00464 * 359.97438 * 16 15 2 18 18 C 1.47273 * 119.99648 * 180.02562 * 16 15 2 19 19 C 1.35204 * 123.13656 * 179.70940 * 18 16 15 20 20 S 1.70945 * 108.82310 * 179.87118 * 19 18 16 21 21 C 1.70774 * 91.12977 * 0.32493 * 20 19 18 22 22 C 1.50694 * 124.72133 * 179.84231 * 21 20 19 23 23 H 1.08991 * 110.33691 * 197.21028 * 22 21 20 24 24 C 1.54486 * 110.37286 * 74.95712 * 22 21 20 25 25 C 1.54509 * 104.06642 * 217.18905 * 24 22 21 26 26 C 1.54485 * 104.06102 * 0.02562 * 25 24 22 27 27 O 1.44427 * 104.80425 * 23.98014 * 26 25 24 28 28 N 1.28641 * 110.55623 * 359.80929 * 21 20 19 29 29 H 1.08996 * 109.46733 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46951 * 300.00203 * 1 2 3 31 31 H 1.08994 * 109.46718 * 60.00267 * 1 2 3 32 32 H 1.08996 * 109.47151 * 55.00317 * 4 2 1 33 33 H 1.08999 * 109.47021 * 294.99971 * 4 2 1 34 34 H 1.08997 * 109.46807 * 264.46365 * 6 5 4 35 35 H 1.09000 * 109.47298 * 144.46043 * 6 5 4 36 36 H 1.09006 * 109.46619 * 24.46281 * 6 5 4 37 37 H 0.96996 * 119.99876 * 180.02562 * 10 9 7 38 38 H 0.97002 * 119.99697 * 264.99787 * 15 2 1 39 39 H 1.08001 * 125.59233 * 359.97438 * 19 18 16 40 40 H 1.08999 * 110.51064 * 335.84456 * 24 22 21 41 41 H 1.09002 * 110.50394 * 98.40831 * 24 22 21 42 42 H 1.08994 * 110.50680 * 118.64332 * 25 24 22 43 43 H 1.08999 * 110.51271 * 241.22317 * 25 24 22 44 44 H 1.08996 * 110.36647 * 142.80542 * 26 25 24 45 45 H 1.08998 * 110.37042 * 265.03573 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.3344 0.2342 1.7613 7 6 4.0850 -1.9158 0.6024 8 1 3.5517 -2.8536 0.5520 9 6 5.3635 -1.8149 0.0710 10 7 6.0433 -0.6953 0.2002 11 14 6.1188 -3.2681 -0.8273 12 1 5.1573 -4.3997 -0.8347 13 1 6.4341 -2.8766 -2.2247 14 1 7.3660 -3.6833 -0.1362 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8574 1.1617 -2.4119 18 6 2.6376 -0.7128 -3.5597 19 6 2.7855 -0.1023 -4.7569 20 16 3.3771 -1.2405 -5.8869 21 6 3.3837 -2.4672 -4.6989 22 6 3.8125 -3.8918 -4.9385 23 1 3.4484 -4.5366 -4.1387 24 6 5.3514 -3.9801 -5.0420 25 6 5.5937 -5.0457 -6.1342 26 6 4.1726 -5.4747 -6.5620 27 8 3.3298 -4.3530 -6.2195 28 7 2.9724 -2.0056 -3.5708 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.6054 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 4.6215 0.9330 0.9756 35 1 5.2294 -0.2051 2.2019 36 1 3.7728 0.7636 2.5311 37 1 6.9365 -0.6246 -0.1714 38 1 2.2491 -1.6318 -1.1525 39 1 2.5674 0.9348 -4.9650 40 1 5.7695 -3.0203 -5.3452 41 1 5.7802 -4.2994 -4.0921 42 1 6.1316 -4.6126 -6.9775 43 1 6.1444 -5.8931 -5.7257 44 1 4.1394 -5.6604 -7.6355 45 1 3.8639 -6.3648 -6.0138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275559561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -11.044167 kcal Electronic energy + Delta-G solvation = -28437.941579 eV Core-core repulsion = 24583.305754 eV Total energy + Delta-G solvation = -3854.635826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28166 -39.47162 -38.21582 -36.21415 -33.94297 -32.41094 -31.65828 -31.21628 -29.96962 -28.67671 -26.12642 -25.59328 -25.41606 -23.63417 -22.03266 -21.55840 -20.87562 -19.87831 -19.49336 -18.47292 -16.75520 -16.56236 -16.29203 -16.11701 -15.46070 -15.23604 -14.94812 -14.81214 -14.25022 -13.95964 -13.78353 -13.53567 -13.33322 -12.99303 -12.86525 -12.79894 -12.21246 -12.00331 -11.93730 -11.84058 -11.64038 -11.57121 -11.38997 -11.12805 -10.96164 -10.83822 -10.66545 -10.35232 -10.18417 -10.15637 -10.02304 -9.81657 -9.68098 -9.48338 -9.44008 -8.75223 -8.49405 -8.20094 -6.71804 -5.71968 -3.17631 0.67896 1.35590 1.78998 2.27337 3.32920 3.38273 3.38983 3.41941 3.80981 4.05298 4.22380 4.40257 4.48928 4.67109 4.73565 4.99717 5.03792 5.16434 5.35779 5.38118 5.44525 5.46932 5.55318 5.60253 5.63267 5.70131 5.79738 5.85351 5.90189 6.02112 6.09795 6.21178 6.29694 6.49004 6.50728 6.55758 6.81527 6.92683 7.28385 7.51683 7.62219 7.77570 7.89099 8.36304 8.42898 8.92121 9.26643 9.88299 10.38739 11.32581 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011034 B = 0.004968 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.962388 B = 5635.201873 C = 7207.452542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.078 0.922 4 C 0.143 3.857 5 N -0.602 5.602 6 C 0.167 3.833 7 C -0.251 4.251 8 H 0.067 0.933 9 C 0.014 3.986 10 N -0.903 5.903 11 Si 0.890 3.110 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.294 1.294 15 N -0.666 5.666 16 C 0.592 3.408 17 O -0.557 6.557 18 C 0.029 3.971 19 C -0.235 4.235 20 S 0.221 5.779 21 C 0.022 3.978 22 C 0.155 3.845 23 H 0.104 0.896 24 C -0.150 4.150 25 C -0.154 4.154 26 C 0.046 3.954 27 O -0.366 6.366 28 N -0.419 5.419 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.052 0.948 36 H -0.009 1.009 37 H 0.250 0.750 38 H 0.413 0.587 39 H 0.188 0.812 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 -6.576 -12.648 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.324 5.324 6 C 0.023 3.977 7 C -0.380 4.380 8 H 0.085 0.915 9 C -0.185 4.185 10 N -0.548 5.548 11 Si 0.720 3.280 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.221 1.221 15 N -0.314 5.314 16 C 0.375 3.625 17 O -0.437 6.437 18 C -0.107 4.107 19 C -0.377 4.377 20 S 0.478 5.522 21 C -0.257 4.257 22 C 0.094 3.906 23 H 0.122 0.878 24 C -0.189 4.189 25 C -0.192 4.192 26 C -0.031 4.031 27 O -0.285 6.285 28 N -0.135 5.135 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.009 0.991 37 H 0.060 0.940 38 H 0.251 0.749 39 H 0.205 0.795 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.536 -5.960 -13.361 15.317 hybrid contribution 0.653 -0.679 0.387 1.018 sum -3.884 -6.638 -12.974 15.082 Atomic orbital electron populations 1.22154 0.96717 1.01374 1.01584 1.21921 0.91956 0.98425 0.86894 0.90420 1.21190 0.86055 0.97896 0.93434 1.43892 0.98861 1.22506 1.67167 1.20868 0.92969 0.90140 0.93750 1.19104 0.99101 0.89089 1.30703 0.91528 1.25079 0.98193 0.96361 0.98850 1.70094 1.11614 1.24990 1.48072 0.86365 0.78956 0.82515 0.80126 1.19974 1.21341 1.22119 1.45601 1.63106 1.14890 1.07811 1.16945 0.77781 0.85597 0.82199 1.90732 1.52818 1.15010 1.85145 1.20541 1.05391 0.89046 0.95684 1.26655 1.07170 1.06845 0.97007 1.82638 1.56781 0.98807 1.13962 1.26485 1.05650 1.00696 0.92905 1.21211 0.93300 0.87974 0.88095 0.87819 1.23078 0.94364 1.00734 1.00693 1.22959 0.97953 0.99244 0.99009 1.23444 0.88760 0.89429 1.01454 1.89150 1.55956 1.48031 1.35344 1.66800 1.10888 1.11680 1.24161 0.92926 0.92120 0.92938 0.93326 0.92872 0.95812 0.92925 0.99088 0.93975 0.74913 0.79455 0.90152 0.89259 0.90251 0.89986 0.88548 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.48 37.16 0.35 -2.19 16 2 C 0.12 2.28 2.88 -67.93 -0.20 2.09 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.86 5.36 -4.04 -0.02 2.84 16 5 N -0.60 -14.81 2.82 -181.11 -0.51 -15.33 16 6 C 0.17 4.20 8.99 59.85 0.54 4.74 16 7 C -0.25 -6.60 8.01 -15.06 -0.12 -6.72 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 C 0.01 0.38 5.38 -17.43 -0.09 0.28 16 10 N -0.90 -26.20 10.13 55.49 0.56 -25.64 16 11 Si 0.89 21.37 29.56 -169.99 -5.02 16.34 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 N -0.67 -14.09 4.48 -54.93 -0.25 -14.34 16 16 C 0.59 12.95 7.76 -12.59 -0.10 12.85 16 17 O -0.56 -13.09 16.37 5.25 0.09 -13.01 16 18 C 0.03 0.57 6.70 -84.52 -0.57 0.00 16 19 C -0.23 -3.87 10.62 29.65 0.31 -3.56 16 20 S 0.22 3.04 22.69 -107.50 -2.44 0.60 16 21 C 0.02 0.36 6.26 -13.62 -0.09 0.28 16 22 C 0.16 2.16 3.82 -27.11 -0.10 2.06 16 23 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 24 C -0.15 -1.90 6.62 -25.16 -0.17 -2.06 16 25 C -0.15 -1.38 7.09 -25.16 -0.18 -1.55 16 26 C 0.05 0.41 7.63 37.94 0.29 0.69 16 27 O -0.37 -4.56 11.13 -35.23 -0.39 -4.95 16 28 N -0.42 -8.05 10.12 -8.51 -0.09 -8.13 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 33 H 0.05 0.96 7.86 -51.93 -0.41 0.56 16 34 H 0.02 0.66 7.43 -51.93 -0.39 0.27 16 35 H 0.05 1.42 7.04 -51.93 -0.37 1.06 16 36 H -0.01 -0.21 7.83 -51.93 -0.41 -0.61 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.41 8.97 6.92 -40.82 -0.28 8.69 16 39 H 0.19 2.80 8.03 -52.49 -0.42 2.38 16 40 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -32.11 383.23 -9.25 -41.36 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.84 Total: 7.57 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -0.14 Total: 9.75 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.28 Total: -63.44 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.31 Total: -17.96 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.44 Total: 0.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.11 -9.25 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275559561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.319 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds