Wall clock time and date at job start Sat Apr 11 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46833 * 2 1 4 4 C 1.52998 * 109.46949 * 240.00457 * 2 1 3 5 5 N 1.46501 * 109.47285 * 184.99856 * 4 2 1 6 6 C 1.46501 * 119.99811 * 89.99664 * 5 4 2 7 7 C 1.36938 * 119.99993 * 270.00321 * 5 4 2 8 8 H 1.07996 * 120.00091 * 142.14306 * 7 5 4 9 9 C 1.38811 * 119.99728 * 322.13617 * 7 5 4 10 10 N 1.31625 * 119.99822 * 156.04645 * 9 7 5 11 11 Si 1.86794 * 120.00160 * 336.04796 * 9 7 5 12 12 H 1.48500 * 109.47385 * 95.18220 * 11 9 7 13 13 H 1.48504 * 109.47273 * 215.17977 * 11 9 7 14 14 H 1.48500 * 109.47396 * 335.18037 * 11 9 7 15 15 N 1.46497 * 109.47133 * 120.00159 * 2 1 3 16 16 C 1.34775 * 120.00313 * 274.99591 * 15 2 1 17 17 O 1.21630 * 119.99446 * 0.02562 * 16 15 2 18 18 C 1.47260 * 120.00236 * 179.97438 * 16 15 2 19 19 C 1.35211 * 123.14308 * 179.70903 * 18 16 15 20 20 S 1.70941 * 108.82680 * 179.91189 * 19 18 16 21 21 C 1.70775 * 91.12996 * 0.30110 * 20 19 18 22 22 C 1.50700 * 124.71691 * 179.82472 * 21 20 19 23 23 H 1.09002 * 110.32691 * 197.25110 * 22 21 20 24 24 C 1.54484 * 110.37379 * 75.00348 * 22 21 20 25 25 C 1.54512 * 104.06123 * 217.18678 * 24 22 21 26 26 C 1.54478 * 104.06311 * 0.02562 * 25 24 22 27 27 O 1.44424 * 110.37289 * 319.61672 * 22 21 20 28 28 N 1.28648 * 110.55931 * 359.82510 * 21 20 19 29 29 H 1.09004 * 109.47581 * 59.99824 * 1 2 3 30 30 H 1.09003 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47506 * 299.99598 * 1 2 3 32 32 H 1.08996 * 109.47515 * 64.99806 * 4 2 1 33 33 H 1.09000 * 109.46899 * 304.99927 * 4 2 1 34 34 H 1.08994 * 109.47140 * 95.53905 * 6 5 4 35 35 H 1.09000 * 109.47123 * 215.53441 * 6 5 4 36 36 H 1.08996 * 109.47519 * 335.53537 * 6 5 4 37 37 H 0.97000 * 119.99551 * 180.02562 * 10 9 7 38 38 H 0.97005 * 119.99876 * 95.00084 * 15 2 1 39 39 H 1.07996 * 125.58458 * 0.02562 * 19 18 16 40 40 H 1.09002 * 110.50757 * 335.83257 * 24 22 21 41 41 H 1.09000 * 110.50943 * 98.40383 * 24 22 21 42 42 H 1.09001 * 110.50732 * 118.64303 * 25 24 22 43 43 H 1.08993 * 110.51256 * 241.21784 * 25 24 22 44 44 H 1.08990 * 110.37445 * 142.81070 * 26 25 24 45 45 H 1.09003 * 110.37026 * 265.03629 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1258 -1.9919 -0.5614 7 6 4.2798 0.1650 -1.7241 8 1 5.1937 0.4584 -1.2290 9 6 3.8957 0.7926 -2.9011 10 7 4.3310 2.0046 -3.1731 11 14 2.7609 -0.0829 -4.0991 12 1 1.3574 0.3289 -3.8426 13 1 3.1362 0.2776 -5.4900 14 1 2.8870 -1.5514 -3.9173 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8575 1.1617 2.4118 18 6 2.6375 -0.7127 3.5596 19 6 2.7963 -0.0996 4.7542 20 16 3.3781 -1.2403 5.8867 21 6 3.3842 -2.4671 4.6987 22 6 3.8124 -3.8919 4.9385 23 1 4.0168 -4.3905 3.9910 24 6 2.7235 -4.6558 5.7242 25 6 3.5220 -5.5784 6.6721 26 6 4.9988 -5.2623 6.3475 27 8 4.9777 -3.9300 5.7908 28 7 2.9724 -2.0056 3.5706 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2952 34 1 4.3718 -2.7291 -1.3256 35 1 5.0364 -1.6827 -0.0484 36 1 3.4348 -2.4312 0.1581 37 1 4.0623 2.4432 -3.9955 38 1 2.2490 -1.6318 1.1525 39 1 2.5879 0.9399 4.9596 40 1 2.1074 -3.9617 6.2960 41 1 2.1053 -5.2442 5.0462 42 1 3.3007 -5.3404 7.7126 43 1 3.2983 -6.6247 6.4647 44 1 5.6003 -5.2849 7.2561 45 1 5.3875 -5.9732 5.6182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275559562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:58 Heat of formation + Delta-G solvation = -5.928417 kcal Electronic energy + Delta-G solvation = -27632.206849 eV Core-core repulsion = 23777.792858 eV Total energy + Delta-G solvation = -3854.413990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56794 -39.72415 -38.49945 -36.54660 -33.99552 -32.66732 -31.88087 -31.48082 -30.64162 -28.93562 -26.61885 -25.86567 -25.50343 -23.86839 -22.23284 -21.55004 -21.05405 -20.40449 -19.78522 -18.75183 -16.98614 -16.83185 -16.51809 -16.23230 -15.67011 -15.56086 -15.22237 -14.90143 -14.45112 -14.29832 -14.14156 -13.86081 -13.45492 -13.16994 -13.04481 -12.92388 -12.59897 -12.29553 -12.18076 -12.02531 -11.98001 -11.86527 -11.79404 -11.50165 -11.29113 -11.18231 -10.79456 -10.50155 -10.39081 -10.23041 -10.13149 -9.97800 -9.75995 -9.68129 -9.55454 -9.02358 -8.58733 -8.41106 -6.79120 -5.97625 -3.37975 0.40881 1.08936 1.53162 1.95771 3.13402 3.29813 3.46113 3.51968 3.62271 3.67593 3.94949 4.11961 4.41480 4.48864 4.53097 4.71862 4.80345 4.90192 4.98681 5.15885 5.20592 5.25253 5.29786 5.36587 5.38846 5.50048 5.54802 5.57734 5.75580 5.84640 5.89692 6.05410 6.15766 6.27132 6.28802 6.41345 6.50522 6.66286 6.72403 6.85926 7.04699 7.30073 8.01146 8.06589 8.41123 8.61922 8.99465 9.72419 10.12584 11.18166 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.003043 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.734644 B = 9197.956440 C = 9845.842324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.096 0.904 4 C 0.131 3.869 5 N -0.607 5.607 6 C 0.129 3.871 7 C -0.268 4.268 8 H 0.077 0.923 9 C 0.036 3.964 10 N -0.895 5.895 11 Si 0.873 3.127 12 H -0.284 1.284 13 H -0.300 1.300 14 H -0.270 1.270 15 N -0.685 5.685 16 C 0.590 3.410 17 O -0.539 6.539 18 C 0.020 3.980 19 C -0.231 4.231 20 S 0.236 5.764 21 C 0.019 3.981 22 C 0.154 3.846 23 H 0.104 0.896 24 C -0.146 4.146 25 C -0.155 4.155 26 C 0.045 3.955 27 O -0.365 6.365 28 N -0.430 5.430 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.009 0.991 35 H 0.038 0.962 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.402 0.598 39 H 0.191 0.809 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -16.021 22.203 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.114 0.886 4 C 0.004 3.996 5 N -0.331 5.331 6 C -0.017 4.017 7 C -0.397 4.397 8 H 0.094 0.906 9 C -0.165 4.165 10 N -0.536 5.536 11 Si 0.703 3.297 12 H -0.212 1.212 13 H -0.228 1.228 14 H -0.194 1.194 15 N -0.335 5.335 16 C 0.372 3.628 17 O -0.416 6.416 18 C -0.115 4.115 19 C -0.373 4.373 20 S 0.493 5.507 21 C -0.261 4.261 22 C 0.093 3.907 23 H 0.122 0.878 24 C -0.185 4.185 25 C -0.192 4.192 26 C -0.032 4.032 27 O -0.283 6.283 28 N -0.147 5.147 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.239 0.761 39 H 0.208 0.792 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.639 -15.207 22.693 27.708 hybrid contribution -0.892 -0.434 -1.717 1.983 sum -5.531 -15.641 20.976 26.744 Atomic orbital electron populations 1.22154 0.96368 1.01292 1.02131 1.21866 0.92235 0.99594 0.85112 0.88560 1.21533 0.85387 0.97546 0.95122 1.43963 1.00020 1.20939 1.68157 1.21103 0.96562 0.89132 0.94873 1.18748 1.06946 1.10557 1.03434 0.90577 1.25475 0.97897 0.95936 0.97156 1.69911 1.46878 1.11221 1.25603 0.86987 0.80075 0.81440 0.81206 1.21202 1.22777 1.19430 1.45870 1.64704 1.14163 1.08760 1.16992 0.78030 0.85783 0.81991 1.90799 1.51360 1.14781 1.84708 1.20563 1.06152 0.88888 0.95919 1.26739 1.06136 1.07226 0.97169 1.82795 1.55914 0.98567 1.13392 1.26539 1.05538 1.01074 0.92899 1.21221 0.85878 0.87563 0.96005 0.87794 1.23029 0.97986 0.98857 0.98596 1.22961 0.95136 1.00539 1.00603 1.23460 0.96646 0.84087 0.99001 1.89185 1.44641 1.31654 1.62857 1.66801 1.12065 1.11477 1.24311 0.91690 0.93070 0.92604 0.91266 0.93806 0.97262 0.94375 0.95252 0.92696 0.76076 0.79216 0.90263 0.89267 0.90257 0.89958 0.88463 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.48 37.16 0.35 -2.33 16 2 C 0.12 2.39 2.88 -67.93 -0.20 2.19 16 3 H 0.10 2.32 7.58 -51.93 -0.39 1.93 16 4 C 0.13 2.82 4.14 -4.04 -0.02 2.80 16 5 N -0.61 -14.64 2.32 -181.13 -0.42 -15.06 16 6 C 0.13 2.63 10.23 59.85 0.61 3.24 16 7 C -0.27 -7.69 9.92 -15.06 -0.15 -7.84 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 9 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 10 N -0.90 -27.79 13.97 55.49 0.78 -27.01 16 11 Si 0.87 22.14 25.19 -169.99 -4.28 17.86 16 12 H -0.28 -6.89 6.64 56.52 0.38 -6.51 16 13 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 N -0.68 -12.74 4.52 -54.94 -0.25 -12.98 16 16 C 0.59 11.32 7.76 -12.59 -0.10 11.22 16 17 O -0.54 -11.86 16.37 5.25 0.09 -11.77 16 18 C 0.02 0.32 6.70 -84.52 -0.57 -0.24 16 19 C -0.23 -3.09 10.62 29.65 0.31 -2.78 16 20 S 0.24 2.45 22.69 -107.50 -2.44 0.01 16 21 C 0.02 0.22 6.26 -13.61 -0.09 0.14 16 22 C 0.15 1.44 3.82 -27.10 -0.10 1.34 16 23 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 24 C -0.15 -0.95 6.62 -25.16 -0.17 -1.12 16 25 C -0.15 -0.73 7.09 -25.16 -0.18 -0.91 16 26 C 0.04 0.26 7.63 37.93 0.29 0.55 16 27 O -0.36 -3.52 11.12 -35.23 -0.39 -3.91 16 28 N -0.43 -6.25 10.12 -8.51 -0.09 -6.33 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.63 3.43 -51.93 -0.18 1.45 16 33 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.03 0.51 5.77 -51.93 -0.30 0.21 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.40 6.92 5.73 -40.82 -0.23 6.69 16 39 H 0.19 2.35 8.03 -52.49 -0.42 1.93 16 40 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -34.46 377.94 -7.98 -42.44 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.59 Total: 3.85 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.08 Total: 7.23 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.02 Total: -61.39 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.31 Total: -15.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.28 Total: 17.86 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.44 Total: 0.01 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.46 -7.98 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275559562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.507 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds