Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46944 * 2 1 4 4 C 1.53006 * 109.46764 * 240.00380 * 2 1 3 5 5 N 1.46505 * 109.46770 * 184.99627 * 4 2 1 6 6 C 1.46497 * 119.99912 * 270.00112 * 5 4 2 7 7 C 1.36934 * 119.99903 * 90.00431 * 5 4 2 8 8 H 1.08002 * 119.99933 * 22.26916 * 7 5 4 9 9 C 1.38814 * 119.99781 * 202.27944 * 7 5 4 10 10 N 1.31613 * 120.00124 * 11.50670 * 9 7 5 11 11 Si 1.86803 * 119.99733 * 191.51009 * 9 7 5 12 12 H 1.48494 * 109.47473 * 59.99349 * 11 9 7 13 13 H 1.48496 * 109.47024 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46713 * 299.99304 * 11 9 7 15 15 N 1.46497 * 109.47363 * 120.00588 * 2 1 3 16 16 C 1.34773 * 119.99579 * 274.99662 * 15 2 1 17 17 O 1.21635 * 120.00275 * 359.72833 * 16 15 2 18 18 C 1.47273 * 119.99850 * 179.97438 * 16 15 2 19 19 C 1.35201 * 123.14004 * 179.74851 * 18 16 15 20 20 S 1.70942 * 108.82746 * 180.02562 * 19 18 16 21 21 C 1.70772 * 91.12692 * 0.02562 * 20 19 18 22 22 C 1.50701 * 124.72156 * 180.02562 * 21 20 19 23 23 H 1.08995 * 109.87390 * 164.27233 * 22 21 20 24 24 C 1.54103 * 109.87895 * 285.28429 * 22 21 20 25 25 C 1.54810 * 104.18686 * 121.45096 * 24 22 21 26 26 C 1.54997 * 102.09458 * 20.88056 * 25 24 22 27 27 O 1.43754 * 109.87545 * 43.26737 * 22 21 20 28 28 N 1.28650 * 110.55923 * 359.72944 * 21 20 19 29 29 H 1.08994 * 109.47848 * 60.00176 * 1 2 3 30 30 H 1.09008 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46983 * 299.99115 * 1 2 3 32 32 H 1.09002 * 109.47302 * 304.99494 * 4 2 1 33 33 H 1.09000 * 109.46893 * 65.00041 * 4 2 1 34 34 H 1.08994 * 109.47415 * 94.21479 * 6 5 4 35 35 H 1.09004 * 109.47084 * 214.21381 * 6 5 4 36 36 H 1.09001 * 109.47175 * 334.20902 * 6 5 4 37 37 H 0.96999 * 120.00034 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00241 * 95.00335 * 15 2 1 39 39 H 1.08006 * 125.59272 * 0.04156 * 19 18 16 40 40 H 1.08999 * 110.48660 * 240.12742 * 24 22 21 41 41 H 1.08997 * 110.48325 * 2.77434 * 24 22 21 42 42 H 1.09001 * 110.90378 * 139.07682 * 25 24 22 43 43 H 1.08997 * 110.91016 * 262.64261 * 25 24 22 44 44 H 1.09001 * 110.61356 * 81.47566 * 26 25 24 45 45 H 1.09003 * 110.61418 * 204.47130 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8263 -1.1907 6 6 4.3342 0.2342 -1.7614 7 6 4.0850 -1.9158 -0.6026 8 1 3.5335 -2.8395 -0.5080 9 6 5.3868 -1.8328 -0.1278 10 7 5.9794 -0.6615 -0.0334 11 14 6.2973 -3.3837 0.3772 12 1 6.3977 -4.3001 -0.7869 13 1 7.6608 -3.0271 0.8449 14 1 5.5573 -4.0570 1.4748 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0184 2.3570 17 8 1.8626 1.1630 2.4105 18 6 2.6376 -0.7128 3.5596 19 6 2.7956 -0.0999 4.7542 20 16 3.3808 -1.2397 5.8859 21 6 3.3814 -2.4678 4.6994 22 6 3.8052 -3.8938 4.9402 23 1 3.4564 -4.5269 4.1244 24 6 5.3406 -3.9734 5.0457 25 6 5.5937 -4.5758 6.4492 26 6 4.2389 -5.2630 6.7568 27 8 3.2634 -4.3608 6.1872 28 7 2.9638 -2.0079 3.5728 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6054 -1.7198 -1.2953 33 1 1.7515 -0.1582 -2.1370 34 1 4.6020 0.9458 -0.9804 35 1 5.2404 -0.2025 -2.1812 36 1 3.7810 0.7484 -2.5473 37 1 6.8892 -0.6035 0.2980 38 1 2.2492 -1.6318 1.1524 39 1 2.5863 0.9395 4.9601 40 1 5.7428 -4.6271 4.2718 41 1 5.7800 -2.9786 4.9726 42 1 6.4023 -5.3062 6.4189 43 1 5.8069 -3.7922 7.1762 44 1 4.1849 -6.2385 6.2734 45 1 4.0923 -5.3579 7.8328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275559564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -12.147133 kcal Electronic energy + Delta-G solvation = -28381.863902 eV Core-core repulsion = 24527.180249 eV Total energy + Delta-G solvation = -3854.683654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25940 -39.45204 -38.17483 -36.20003 -33.92314 -32.43271 -31.60668 -31.19006 -29.95854 -28.65348 -26.14367 -25.56908 -25.36618 -23.50007 -22.16051 -21.59587 -20.82365 -19.85804 -19.44872 -18.44359 -16.74817 -16.60719 -16.26598 -16.08457 -15.33622 -15.25798 -14.88976 -14.76981 -14.18313 -13.85092 -13.81689 -13.50149 -13.33225 -13.03779 -12.92331 -12.78097 -12.19337 -11.98236 -11.90725 -11.83283 -11.60387 -11.49907 -11.35001 -11.23048 -10.99154 -10.81217 -10.67736 -10.36891 -10.22413 -10.14358 -10.03455 -9.77894 -9.61012 -9.45258 -9.40119 -8.70981 -8.51332 -8.16841 -6.73124 -5.68963 -3.14208 0.72121 1.39613 1.82523 2.32360 3.35981 3.40857 3.42016 3.44050 3.83109 4.10067 4.21088 4.36634 4.51137 4.68351 4.70639 5.02077 5.03555 5.24803 5.39234 5.41379 5.43478 5.51859 5.57143 5.59447 5.63460 5.71550 5.80163 5.86291 5.92028 6.02819 6.13499 6.21723 6.30493 6.50089 6.55905 6.57917 6.78403 6.92918 7.31457 7.42046 7.67162 7.76065 7.83702 8.39240 8.42199 8.95798 9.25769 9.89510 10.38917 11.35659 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.004939 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.766355 B = 5668.266523 C = 7339.443298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.165 3.835 7 C -0.252 4.252 8 H 0.066 0.934 9 C 0.010 3.990 10 N -0.901 5.901 11 Si 0.893 3.107 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.278 1.278 15 N -0.665 5.665 16 C 0.593 3.407 17 O -0.558 6.558 18 C 0.030 3.970 19 C -0.235 4.235 20 S 0.213 5.787 21 C 0.020 3.980 22 C 0.158 3.842 23 H 0.104 0.896 24 C -0.149 4.149 25 C -0.155 4.155 26 C 0.046 3.954 27 O -0.368 6.368 28 N -0.418 5.418 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.044 0.956 36 H -0.005 1.005 37 H 0.250 0.750 38 H 0.413 0.587 39 H 0.187 0.813 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -6.296 12.712 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.381 4.381 8 H 0.083 0.917 9 C -0.188 4.188 10 N -0.546 5.546 11 Si 0.724 3.276 12 H -0.213 1.213 13 H -0.219 1.219 14 H -0.204 1.204 15 N -0.313 5.313 16 C 0.376 3.624 17 O -0.438 6.438 18 C -0.105 4.105 19 C -0.377 4.377 20 S 0.470 5.530 21 C -0.259 4.259 22 C 0.096 3.904 23 H 0.121 0.879 24 C -0.188 4.188 25 C -0.193 4.193 26 C -0.031 4.031 27 O -0.286 6.286 28 N -0.134 5.134 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.061 0.939 38 H 0.251 0.749 39 H 0.204 0.796 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.118 -5.704 13.395 15.130 hybrid contribution 0.749 -0.692 -0.604 1.185 sum -3.369 -6.396 12.791 14.692 Atomic orbital electron populations 1.22159 0.96770 1.01356 1.01562 1.21907 0.91907 0.98440 0.86950 0.90430 1.21197 0.86046 0.97928 0.93474 1.43903 0.98867 1.22665 1.66606 1.20787 0.92951 0.90454 0.93793 1.19007 0.97013 0.89365 1.32731 0.91659 1.24937 0.98676 0.96019 0.99216 1.70066 1.13249 1.21592 1.49687 0.86490 0.79101 0.83360 0.78699 1.21258 1.21895 1.20424 1.45568 1.63104 1.14878 1.07762 1.16937 0.77682 0.85581 0.82209 1.90729 1.52978 1.14924 1.85192 1.20540 1.05307 0.88986 0.95670 1.26621 1.07337 1.06739 0.96985 1.82583 1.57337 0.98878 1.14199 1.26774 1.05430 1.00950 0.92795 1.20998 0.93080 0.87582 0.88710 0.87867 1.23058 0.94019 1.03628 0.98138 1.23172 0.98426 1.00896 0.96795 1.23652 0.86813 0.93164 0.99436 1.88960 1.41979 1.62864 1.34802 1.66820 1.10833 1.11632 1.24122 0.92146 0.92943 0.92952 0.93297 0.92863 0.95472 0.93712 0.98599 0.93941 0.74924 0.79551 0.89236 0.89783 0.89643 0.90159 0.91573 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 37.16 0.35 -2.21 16 2 C 0.12 2.30 2.88 -67.93 -0.20 2.10 16 3 H 0.08 1.74 7.57 -51.93 -0.39 1.34 16 4 C 0.14 2.85 5.36 -4.04 -0.02 2.82 16 5 N -0.60 -14.69 2.82 -181.11 -0.51 -15.20 16 6 C 0.16 4.11 9.01 59.85 0.54 4.65 16 7 C -0.25 -6.61 8.02 -15.06 -0.12 -6.73 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 C 0.01 0.28 5.13 -17.43 -0.09 0.19 16 10 N -0.90 -26.15 10.59 55.49 0.59 -25.56 16 11 Si 0.89 21.38 29.57 -169.99 -5.03 16.35 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 N -0.66 -14.21 4.48 -54.93 -0.25 -14.46 16 16 C 0.59 13.12 7.76 -12.59 -0.10 13.02 16 17 O -0.56 -13.28 16.37 5.25 0.09 -13.20 16 18 C 0.03 0.61 6.70 -84.53 -0.57 0.04 16 19 C -0.23 -3.92 10.62 29.65 0.31 -3.60 16 20 S 0.21 2.92 22.72 -107.50 -2.44 0.47 16 21 C 0.02 0.33 6.10 -13.61 -0.08 0.25 16 22 C 0.16 2.18 3.94 -27.31 -0.11 2.07 16 23 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 24 C -0.15 -1.81 6.63 -25.20 -0.17 -1.98 16 25 C -0.16 -1.34 7.16 -24.72 -0.18 -1.51 16 26 C 0.05 0.40 7.72 38.21 0.29 0.69 16 27 O -0.37 -4.57 11.01 -35.23 -0.39 -4.96 16 28 N -0.42 -8.09 10.12 -8.51 -0.09 -8.17 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.93 8.03 -51.93 -0.42 0.52 16 33 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 34 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 35 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 36 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 37 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.41 9.07 6.92 -40.82 -0.28 8.79 16 39 H 0.19 2.83 8.03 -52.48 -0.42 2.41 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.11 7.69 -51.93 -0.40 0.71 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -32.31 383.51 -9.21 -41.52 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.84 Total: 7.62 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -0.13 Total: 9.80 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.26 Total: -63.39 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.30 Total: -18.15 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.44 Total: 0.47 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.31 -9.21 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275559564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.374 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds