Wall clock time and date at job start Sat Apr 11 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46939 * 2 1 4 4 C 1.53001 * 109.47361 * 240.00035 * 2 1 3 5 5 N 1.46498 * 109.47148 * 185.00123 * 4 2 1 6 6 C 1.46500 * 120.00020 * 269.99987 * 5 4 2 7 7 C 1.36930 * 120.00145 * 89.99587 * 5 4 2 8 8 H 1.08006 * 119.99875 * 22.03025 * 7 5 4 9 9 C 1.38812 * 120.00477 * 202.03053 * 7 5 4 10 10 N 1.31626 * 119.99680 * 11.43090 * 9 7 5 11 11 Si 1.86800 * 120.00373 * 191.44007 * 9 7 5 12 12 H 1.48500 * 109.47137 * 59.99385 * 11 9 7 13 13 H 1.48493 * 109.47059 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46735 * 299.99427 * 11 9 7 15 15 N 1.46496 * 109.46837 * 119.99978 * 2 1 3 16 16 C 1.34785 * 119.99933 * 275.00073 * 15 2 1 17 17 O 1.21282 * 119.99789 * 0.02562 * 16 15 2 18 18 C 1.50702 * 119.99819 * 180.02562 * 16 15 2 19 19 C 1.52999 * 109.46900 * 180.02562 * 18 16 15 20 20 N 1.46496 * 109.47013 * 179.97438 * 19 18 16 21 21 C 1.34775 * 120.00037 * 179.97438 * 20 19 18 22 22 O 1.21699 * 120.00282 * 0.02562 * 21 20 19 23 23 C 1.46582 * 120.00313 * 180.02562 * 21 20 19 24 24 C 1.36650 * 125.46314 * 180.02562 * 23 21 20 25 25 C 1.37473 * 113.29848 * 179.97438 * 24 23 21 26 26 C 1.33819 * 115.10167 * 0.02562 * 25 24 23 27 27 S 1.70616 * 110.95223 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47080 * 60.00514 * 1 2 3 29 29 H 1.09004 * 109.46820 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47372 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.46848 * 305.00282 * 4 2 1 32 32 H 1.08997 * 109.46720 * 64.99964 * 4 2 1 33 33 H 1.09003 * 109.47015 * 94.03798 * 6 5 4 34 34 H 1.08994 * 109.47205 * 214.04064 * 6 5 4 35 35 H 1.09001 * 109.47084 * 334.04420 * 6 5 4 36 36 H 0.96998 * 120.00098 * 180.02562 * 10 9 7 37 37 H 0.96997 * 120.00457 * 95.00082 * 15 2 1 38 38 H 1.08994 * 109.46956 * 59.99765 * 18 16 15 39 39 H 1.09001 * 109.46874 * 299.99898 * 18 16 15 40 40 H 1.09003 * 109.46788 * 59.99857 * 19 18 16 41 41 H 1.08999 * 109.47243 * 300.00398 * 19 18 16 42 42 H 0.97004 * 120.00034 * 359.97438 * 20 19 18 43 43 H 1.07998 * 123.34492 * 0.24654 * 24 23 21 44 44 H 1.08003 * 122.44859 * 180.02562 * 25 24 23 45 45 H 1.07997 * 124.51873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7611 7 6 4.0850 -1.9157 -0.6022 8 1 3.5321 -2.8383 -0.5040 9 6 5.3885 -1.8344 -0.1319 10 7 5.9843 -0.6641 -0.0433 11 14 6.2972 -3.3858 0.3750 12 1 6.3916 -4.3061 -0.7867 13 1 7.6630 -3.0309 0.8370 14 1 5.5593 -4.0538 1.4770 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8581 1.1585 2.4117 18 6 2.6498 -0.7285 3.5875 19 6 2.7005 0.2544 4.7589 20 7 3.1887 -0.4362 5.9551 21 6 3.3173 0.2361 7.1161 22 8 3.0273 1.4168 7.1709 23 6 3.8063 -0.4547 8.3128 24 6 3.9785 0.1156 9.5427 25 6 4.4503 -0.7636 10.4884 26 6 4.6585 -2.0108 10.0504 27 16 4.2649 -2.1501 8.3961 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6055 -1.7197 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 4.5996 0.9474 -0.9807 34 1 5.2420 -0.2024 -2.1781 35 1 3.7824 0.7463 -2.5491 36 1 6.8953 -0.6072 0.2849 37 1 2.2490 -1.6317 1.1527 38 1 3.6490 -1.1203 3.3979 39 1 1.9775 -1.5508 3.8325 40 1 1.7009 0.6458 4.9482 41 1 3.3724 1.0771 4.5141 42 1 3.4194 -1.3774 5.9115 43 1 3.7611 1.1525 9.7519 44 1 4.6392 -0.4692 11.5102 45 1 5.0257 -2.8212 10.6626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275721764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:03 Heat of formation + Delta-G solvation = -21.694594 kcal Electronic energy + Delta-G solvation = -26909.712282 eV Core-core repulsion = 23054.614619 eV Total energy + Delta-G solvation = -3855.097663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88914 -39.13931 -37.72343 -36.42358 -35.07610 -33.96644 -31.73969 -31.07990 -30.15915 -29.28103 -26.19908 -25.64959 -25.52442 -23.73810 -21.81012 -21.36135 -20.37609 -19.70299 -19.44966 -18.69127 -16.99674 -16.55974 -16.19597 -15.84381 -15.71951 -15.40953 -14.97766 -14.84396 -14.69491 -13.88376 -13.70936 -13.50564 -13.28711 -13.13403 -13.02356 -12.86716 -12.72759 -12.54306 -12.19776 -11.91122 -11.71348 -11.43609 -11.32640 -11.27336 -11.21304 -10.89355 -10.76371 -10.42190 -10.26662 -10.19935 -10.11776 -9.87200 -9.29615 -9.23325 -9.03659 -8.89419 -8.62150 -8.27093 -6.82794 -5.78557 -3.25012 0.24286 1.17592 1.57918 2.14351 2.94818 3.09752 3.25867 3.28075 3.35844 3.37145 3.97144 4.40288 4.58772 4.69387 4.96768 5.00993 5.18172 5.24218 5.30125 5.32894 5.48684 5.63893 5.65186 5.70383 5.86060 5.90150 5.97954 6.01834 6.06760 6.11684 6.15550 6.24602 6.33332 6.44191 6.51988 6.73504 6.88230 7.28247 7.33296 7.36210 7.65158 7.76911 8.05503 8.27389 8.32053 8.92737 9.15466 9.79743 10.30182 11.25283 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002884 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.926752 B = 9707.277320 C =11288.814390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.257 4.257 8 H 0.066 0.934 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.898 3.102 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.686 5.686 16 C 0.523 3.477 17 O -0.559 6.559 18 C -0.155 4.155 19 C 0.139 3.861 20 N -0.725 5.725 21 C 0.588 3.412 22 O -0.526 6.526 23 C -0.262 4.262 24 C -0.059 4.059 25 C -0.150 4.150 26 C -0.232 4.232 27 S 0.202 5.798 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.027 0.973 34 H 0.045 0.955 35 H -0.005 1.005 36 H 0.253 0.747 37 H 0.404 0.596 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.397 0.603 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.724 -5.603 15.247 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.387 4.387 8 H 0.083 0.917 9 C -0.193 4.193 10 N -0.543 5.543 11 Si 0.728 3.272 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.210 1.210 15 N -0.335 5.335 16 C 0.308 3.692 17 O -0.439 6.439 18 C -0.196 4.196 19 C 0.016 3.984 20 N -0.376 5.376 21 C 0.374 3.626 22 O -0.403 6.403 23 C -0.383 4.383 24 C -0.092 4.092 25 C -0.181 4.181 26 C -0.370 4.370 27 S 0.469 5.531 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.014 0.986 36 H 0.063 0.937 37 H 0.239 0.761 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.231 0.769 43 H 0.172 0.828 44 H 0.163 0.837 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.894 -5.077 14.253 16.238 hybrid contribution 1.040 -0.684 1.501 1.950 sum -4.854 -5.761 15.755 17.463 Atomic orbital electron populations 1.22155 0.96934 1.01177 1.01566 1.21814 0.91739 0.98425 0.87012 0.90554 1.21181 0.85935 0.97853 0.93649 1.43881 0.98910 1.22631 1.66654 1.20797 0.92983 0.90449 0.93829 1.19030 0.97033 0.89495 1.33143 0.91658 1.25005 0.98593 0.96127 0.99569 1.70070 1.13230 1.21627 1.49368 0.86462 0.79336 0.82964 0.78445 1.21130 1.21696 1.20971 1.45683 1.64988 1.14326 1.08514 1.19976 0.77604 0.87049 0.84599 1.90664 1.51681 1.15991 1.85547 1.21783 1.04478 0.99512 0.93784 1.21092 1.01136 0.94629 0.81574 1.45899 1.67804 1.13878 1.10053 1.16904 0.77823 0.86186 0.81697 1.90856 1.49983 1.14844 1.84650 1.24719 1.15748 0.98626 0.99181 1.20829 0.96529 1.01516 0.90310 1.20064 1.03967 0.92489 1.01581 1.25336 1.08635 1.02339 1.00697 1.83098 1.58806 1.06075 1.05124 0.92312 0.93071 0.92940 0.93383 0.93023 0.95416 0.93657 0.98604 0.93662 0.76054 0.87781 0.88908 0.90392 0.90060 0.76924 0.82813 0.83686 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.14 2.88 -67.93 -0.20 1.95 16 3 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 4 C 0.14 2.65 5.36 -4.04 -0.02 2.63 16 5 N -0.60 -13.85 2.82 -181.12 -0.51 -14.36 16 6 C 0.16 3.94 9.01 59.85 0.54 4.48 16 7 C -0.26 -6.28 8.02 -15.06 -0.12 -6.40 16 8 H 0.07 1.52 7.84 -52.48 -0.41 1.11 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -24.76 10.57 55.49 0.59 -24.17 16 11 Si 0.90 20.08 29.57 -169.99 -5.03 15.06 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 N -0.69 -12.46 4.49 -53.80 -0.24 -12.70 16 16 C 0.52 9.72 7.79 -10.98 -0.09 9.64 16 17 O -0.56 -12.27 15.65 5.56 0.09 -12.18 16 18 C -0.16 -2.25 5.81 -27.88 -0.16 -2.41 16 19 C 0.14 2.11 4.96 -4.04 -0.02 2.09 16 20 N -0.73 -9.44 5.55 -61.65 -0.34 -9.78 16 21 C 0.59 8.58 7.78 -12.90 -0.10 8.48 16 22 O -0.53 -9.63 16.84 5.19 0.09 -9.54 16 23 C -0.26 -3.06 6.45 -36.79 -0.24 -3.29 16 24 C -0.06 -0.61 10.01 -40.43 -0.40 -1.02 16 25 C -0.15 -1.21 10.15 -41.41 -0.42 -1.63 16 26 C -0.23 -1.73 10.92 29.18 0.32 -1.41 16 27 S 0.20 1.72 22.16 -107.50 -2.38 -0.67 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.83 8.14 -51.94 -0.42 0.40 16 31 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 33 H 0.03 0.74 7.44 -51.93 -0.39 0.35 16 34 H 0.04 1.17 7.15 -51.93 -0.37 0.80 16 35 H 0.00 -0.10 7.85 -51.93 -0.41 -0.50 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.40 7.09 7.40 -40.82 -0.30 6.79 16 38 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 42 H 0.40 4.10 7.59 -40.82 -0.31 3.79 16 43 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -32.41 390.86 -9.26 -41.67 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.77 Total: 9.60 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.65 Total: 11.18 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.51 Total: -61.01 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.17 Total: -21.72 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.38 Total: -0.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.41 -9.26 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275721764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.977 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds