Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47051 * 2 1 4 4 C 1.53006 * 109.46966 * 119.99647 * 2 1 3 5 5 N 1.46504 * 109.46743 * 174.99729 * 4 2 1 6 6 C 1.46491 * 120.00280 * 269.72740 * 5 4 2 7 7 C 1.36941 * 119.99536 * 90.00653 * 5 4 2 8 8 H 1.08001 * 120.00018 * 337.57006 * 7 5 4 9 9 C 1.38810 * 119.99974 * 157.57225 * 7 5 4 10 10 N 1.31618 * 119.99806 * 346.95679 * 9 7 5 11 11 Si 1.86800 * 119.99812 * 166.95359 * 9 7 5 12 12 H 1.48497 * 109.47100 * 85.90414 * 11 9 7 13 13 H 1.48508 * 109.46980 * 205.89910 * 11 9 7 14 14 H 1.48499 * 109.47484 * 325.89678 * 11 9 7 15 15 N 1.46498 * 109.47016 * 239.99654 * 2 1 3 16 16 C 1.34779 * 119.99534 * 85.00273 * 15 2 1 17 17 O 1.21278 * 120.00423 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99872 * 179.97438 * 16 15 2 19 19 C 1.52992 * 109.47342 * 179.97438 * 18 16 15 20 20 N 1.46497 * 109.47489 * 180.02562 * 19 18 16 21 21 C 1.34778 * 120.00331 * 180.02562 * 20 19 18 22 22 O 1.21707 * 119.99870 * 0.02562 * 21 20 19 23 23 C 1.46578 * 120.00054 * 179.97438 * 21 20 19 24 24 C 1.36649 * 125.45842 * 180.02562 * 23 21 20 25 25 C 1.37479 * 113.29619 * 179.97438 * 24 23 21 26 26 C 1.33806 * 115.10162 * 359.97438 * 25 24 23 27 27 S 1.70623 * 110.95781 * 359.76389 * 26 25 24 28 28 H 1.08997 * 109.46958 * 299.99892 * 1 2 3 29 29 H 1.08997 * 109.46876 * 60.00309 * 1 2 3 30 30 H 1.08997 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46951 * 55.00593 * 4 2 1 32 32 H 1.08995 * 109.47567 * 294.99957 * 4 2 1 33 33 H 1.08999 * 109.47236 * 264.97774 * 6 5 4 34 34 H 1.09003 * 109.47441 * 24.97602 * 6 5 4 35 35 H 1.08998 * 109.47565 * 144.97640 * 6 5 4 36 36 H 0.97006 * 119.99442 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00136 * 264.99556 * 15 2 1 38 38 H 1.09000 * 109.47092 * 300.00239 * 18 16 15 39 39 H 1.09006 * 109.46726 * 60.00297 * 18 16 15 40 40 H 1.08999 * 109.47614 * 300.00849 * 19 18 16 41 41 H 1.09004 * 109.46853 * 60.00082 * 19 18 16 42 42 H 0.97005 * 119.99839 * 0.02562 * 20 19 18 43 43 H 1.08004 * 123.35294 * 359.94356 * 24 23 21 44 44 H 1.08001 * 122.44197 * 180.02562 * 25 24 23 45 45 H 1.08004 * 124.52624 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1259 -1.9947 0.5666 7 6 4.2799 0.1649 1.7241 8 1 3.8763 1.1581 1.8548 9 6 5.5891 -0.1068 2.0968 10 7 6.0039 -1.3530 2.1820 11 14 6.7622 1.2962 2.4773 12 1 6.6109 1.6960 3.8994 13 1 8.1587 0.8537 2.2335 14 1 6.4498 2.4541 1.6015 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8583 1.1583 -2.4117 18 6 2.6499 -0.7286 -3.5874 19 6 2.7007 0.2543 -4.7588 20 7 3.1890 -0.4363 -5.9550 21 6 3.3176 0.2360 -7.1160 22 8 3.0286 1.4170 -7.1706 23 6 3.8067 -0.4549 -8.3127 24 6 3.9799 0.1156 -9.5422 25 6 4.4525 -0.7634 -10.4878 26 6 4.6604 -2.0105 -10.0498 27 16 4.2723 -2.1485 -8.3940 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6055 -1.7198 1.2952 32 1 1.7517 -0.1583 2.1370 33 1 4.3641 -2.7321 1.3332 34 1 3.4381 -2.4323 -0.1570 35 1 5.0410 -1.6894 0.0594 36 1 6.9190 -1.5429 2.4421 37 1 2.2491 -1.6318 -1.1525 38 1 3.6492 -1.1204 -3.3978 39 1 1.9776 -1.5509 -3.8325 40 1 1.7013 0.6459 -4.9482 41 1 3.3727 1.0769 -4.5140 42 1 3.4197 -1.3775 -5.9114 43 1 3.7662 1.1536 -9.7507 44 1 4.6430 -0.4685 -11.5091 45 1 5.0289 -2.8207 -10.6616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275721765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -18.685658 kcal Electronic energy + Delta-G solvation = -26459.001893 eV Core-core repulsion = 22604.034708 eV Total energy + Delta-G solvation = -3854.967186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05199 -39.39981 -37.83191 -36.56151 -35.24117 -34.09502 -31.90281 -31.08859 -30.33359 -29.47978 -26.23906 -25.76797 -25.56345 -23.91072 -21.87003 -21.49549 -20.45760 -20.04373 -19.57162 -18.81674 -17.01665 -16.84447 -16.31684 -16.05284 -15.86905 -15.37733 -15.11898 -15.04461 -14.84070 -13.88369 -13.85728 -13.58516 -13.49905 -13.25401 -13.12391 -13.02852 -12.82008 -12.64037 -12.17813 -12.06029 -11.94255 -11.55161 -11.43436 -11.38691 -11.33283 -10.83905 -10.67467 -10.64503 -10.33611 -10.22129 -10.04124 -9.88994 -9.48840 -9.42740 -9.16707 -8.99211 -8.68567 -8.47810 -6.78250 -5.75724 -3.21628 0.14050 1.07426 1.47494 2.04627 2.77644 2.97387 2.98537 3.37805 3.44413 3.48492 3.68509 4.44863 4.48829 4.58601 4.74285 4.91639 4.99363 5.04018 5.09283 5.29663 5.40505 5.43052 5.56046 5.61680 5.75855 5.77473 5.81114 5.91144 5.92740 5.94913 6.06359 6.14308 6.16931 6.42783 6.50696 6.55665 6.77333 7.03965 7.17780 7.26545 7.63593 7.78635 7.91789 7.93659 8.35348 8.61909 9.20125 9.82600 10.29909 11.28919 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012656 B = 0.002316 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.808988 B =12084.894469 C =13003.165531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.252 4.252 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.910 5.910 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.702 5.702 16 C 0.517 3.483 17 O -0.547 6.547 18 C -0.156 4.156 19 C 0.137 3.863 20 N -0.727 5.727 21 C 0.589 3.411 22 O -0.524 6.524 23 C -0.264 4.264 24 C -0.057 4.057 25 C -0.150 4.150 26 C -0.230 4.230 27 S 0.201 5.799 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.031 0.969 34 H -0.008 1.008 35 H 0.041 0.959 36 H 0.252 0.748 37 H 0.397 0.603 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.397 0.603 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 -7.238 -21.850 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.023 3.977 7 C -0.382 4.382 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.555 5.555 11 Si 0.733 3.267 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.205 1.205 15 N -0.353 5.353 16 C 0.302 3.698 17 O -0.425 6.425 18 C -0.197 4.197 19 C 0.014 3.986 20 N -0.378 5.378 21 C 0.375 3.625 22 O -0.401 6.401 23 C -0.385 4.385 24 C -0.090 4.090 25 C -0.181 4.181 26 C -0.368 4.368 27 S 0.468 5.532 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.010 0.990 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.233 0.767 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.231 0.769 43 H 0.172 0.828 44 H 0.164 0.836 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.402 -6.823 -20.780 22.789 hybrid contribution 1.097 0.779 -0.903 1.621 sum -5.305 -6.045 -21.683 23.127 Atomic orbital electron populations 1.22122 0.96520 1.01240 1.01833 1.21924 0.92119 0.98972 0.86110 0.89758 1.21056 0.85880 0.97507 0.94126 1.43828 0.99080 1.22581 1.66604 1.20816 0.94031 0.89014 0.93833 1.19151 0.93984 0.89773 1.35254 0.91473 1.24981 0.98741 0.96097 0.99786 1.70054 1.16811 1.16645 1.51990 0.86300 0.80382 0.81828 0.78227 1.21347 1.21619 1.20549 1.46013 1.66036 1.13933 1.09324 1.20095 0.77956 0.87252 0.84490 1.90705 1.50722 1.15859 1.85219 1.21817 1.04194 0.99768 0.93880 1.21092 1.01425 0.94525 0.81569 1.45873 1.68063 1.13859 1.10029 1.16910 0.77758 0.86177 0.81682 1.90870 1.49827 1.14842 1.84610 1.24688 1.15938 0.98704 0.99139 1.20846 0.96307 1.01536 0.90328 1.20075 1.03903 0.92464 1.01650 1.25340 1.08505 1.02347 1.00611 1.83032 1.58873 1.06190 1.05141 0.91933 0.92893 0.93082 0.94151 0.91917 0.95088 0.99015 0.94003 0.93789 0.76733 0.88042 0.88568 0.90221 0.89991 0.76910 0.82789 0.83627 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 2 C 0.12 1.99 2.88 -67.93 -0.20 1.80 16 3 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 4 C 0.14 2.69 5.29 -4.04 -0.02 2.67 16 5 N -0.60 -14.09 2.78 -181.12 -0.50 -14.59 16 6 C 0.17 3.76 8.51 59.84 0.51 4.27 16 7 C -0.25 -6.78 9.66 -15.06 -0.15 -6.93 16 8 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 9 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 10 N -0.91 -25.89 10.66 55.49 0.59 -25.30 16 11 Si 0.90 21.99 29.57 -169.99 -5.03 16.96 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 N -0.70 -10.95 4.53 -53.80 -0.24 -11.19 16 16 C 0.52 8.22 7.79 -10.98 -0.09 8.13 16 17 O -0.55 -10.85 15.64 5.56 0.09 -10.77 16 18 C -0.16 -1.75 5.81 -27.89 -0.16 -1.91 16 19 C 0.14 1.75 4.96 -4.05 -0.02 1.73 16 20 N -0.73 -7.81 5.55 -61.65 -0.34 -8.15 16 21 C 0.59 7.56 7.78 -12.90 -0.10 7.46 16 22 O -0.52 -8.81 16.84 5.18 0.09 -8.72 16 23 C -0.26 -2.67 6.45 -36.79 -0.24 -2.91 16 24 C -0.06 -0.52 10.01 -40.43 -0.40 -0.93 16 25 C -0.15 -1.04 10.15 -41.41 -0.42 -1.46 16 26 C -0.23 -1.42 10.92 29.18 0.32 -1.10 16 27 S 0.20 1.37 22.16 -107.50 -2.38 -1.01 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 33 H 0.03 0.77 7.35 -51.93 -0.38 0.39 16 34 H -0.01 -0.15 5.78 -51.93 -0.30 -0.45 16 35 H 0.04 1.03 7.30 -51.93 -0.38 0.65 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 37 H 0.40 5.52 6.22 -40.82 -0.25 5.27 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.40 3.09 7.59 -40.82 -0.31 2.78 16 43 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 44 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -34.49 389.05 -9.20 -43.68 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.63 Total: 4.31 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.70 Total: 8.92 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.50 Total: -59.23 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.17 Total: -19.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.38 Total: -1.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.49 -9.20 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275721765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.995 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds