Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47237 * 263.07541 * 3 2 1 5 5 C 1.34771 * 120.00134 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99726 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00194 * 180.02562 * 5 4 3 8 8 N 1.46898 * 109.47401 * 180.02562 * 7 5 4 9 9 C 1.47954 * 110.99809 * 190.00359 * 8 7 5 10 10 C 1.53937 * 86.17651 * 222.41311 * 9 8 7 11 11 C 1.53010 * 113.73529 * 138.07900 * 10 9 8 12 12 H 1.08997 * 109.46815 * 300.00658 * 11 10 9 13 13 C 1.53003 * 109.46752 * 59.99680 * 11 10 9 14 14 N 1.46496 * 109.47076 * 179.97438 * 11 10 9 15 15 C 1.34774 * 119.99544 * 155.00017 * 14 11 10 16 16 O 1.21279 * 120.00472 * 0.02562 * 15 14 11 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 11 18 18 S 1.81002 * 109.47200 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99878 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47409 * 89.99815 * 23 21 19 25 25 H 1.48504 * 109.46732 * 209.99538 * 23 21 19 26 26 H 1.48503 * 109.47095 * 329.99265 * 23 21 19 27 27 C 1.47956 * 111.00087 * 90.63869 * 8 7 5 28 28 H 4.40639 * 5.51452 * 179.97438 * 4 1 2 29 29 H 1.08995 * 109.46833 * 143.07855 * 3 2 1 30 30 H 1.08996 * 109.47121 * 23.07617 * 3 2 1 31 31 H 0.97007 * 119.99813 * 0.02562 * 4 3 2 32 32 H 1.09004 * 109.46827 * 60.00166 * 7 5 4 33 33 H 1.09008 * 109.47045 * 300.00758 * 7 5 4 34 34 H 1.08999 * 113.76592 * 108.09930 * 9 8 7 35 35 H 1.08997 * 113.76130 * 336.72704 * 9 8 7 36 36 H 1.09001 * 113.73537 * 269.24901 * 10 9 8 37 37 H 1.08997 * 109.46755 * 180.02562 * 13 11 10 38 38 H 1.08992 * 109.47534 * 300.00312 * 13 11 10 39 39 H 1.09005 * 109.46941 * 60.00853 * 13 11 10 40 40 H 0.96994 * 120.00700 * 335.00136 * 14 11 10 41 41 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 42 42 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 43 43 H 0.97001 * 119.99701 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.76293 * 23.26968 * 27 8 7 45 45 H 1.09003 * 113.75654 * 251.89906 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1674 1.3712 5 6 4.4593 0.1972 1.6157 6 8 5.2475 0.0864 0.7005 7 6 4.9616 0.3681 3.0262 8 7 6.4306 0.3689 3.0262 9 6 6.9608 0.2944 4.4055 10 6 7.9821 1.3565 3.9601 11 6 8.2217 2.4543 4.9988 12 1 7.2843 2.9715 5.2034 13 6 8.7508 1.8275 6.2904 14 7 9.2046 3.4096 4.4817 15 6 9.2172 4.6773 4.9392 16 8 8.4153 5.0270 5.7791 17 6 10.2279 5.6604 4.4069 18 16 9.9899 7.2649 5.2101 19 6 11.2652 8.1926 4.4241 20 1 11.9006 7.7217 3.6886 21 6 11.4539 9.5283 4.7511 22 7 10.6798 10.1020 5.6479 23 14 12.8054 10.5119 3.9174 24 1 12.2688 11.1462 2.6865 25 1 13.2948 11.5645 4.8436 26 1 13.9272 9.6071 3.5593 27 6 6.9601 1.7422 2.8756 28 1 -1.0500 0.0002 0.0000 29 1 3.0089 0.8224 -0.6173 30 1 3.0098 -0.9446 -0.4028 31 1 2.5039 0.2556 2.1031 32 1 4.5983 -0.4537 3.6433 33 1 4.5980 1.3134 3.4293 34 1 7.4080 -0.6684 4.6527 35 1 6.2624 0.6476 5.1641 36 1 8.9071 0.9371 3.5645 37 1 8.9210 2.6094 7.0304 38 1 8.0199 1.1164 6.6752 39 1 9.6882 1.3102 6.0857 40 1 9.8462 3.1300 3.8103 41 1 11.2339 5.2955 4.6145 42 1 10.0962 5.7701 3.3305 43 1 10.8115 11.0356 5.8761 44 1 6.2615 2.5189 3.1868 45 1 7.4068 1.9361 1.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276341979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = 20.146519 kcal Electronic energy + Delta-G solvation = -25564.288307 eV Core-core repulsion = 21711.005011 eV Total energy + Delta-G solvation = -3853.283296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91916 -39.68485 -38.83749 -35.88754 -35.15260 -33.11220 -32.42346 -31.89124 -30.35181 -28.52142 -27.71474 -26.39068 -25.47852 -25.06135 -22.29762 -20.87156 -20.42347 -19.78399 -19.15529 -17.84066 -17.34752 -16.87357 -16.57855 -16.27062 -16.10185 -15.55972 -15.11047 -14.85122 -14.79426 -14.78186 -14.24174 -13.94648 -13.81303 -13.61185 -13.29579 -13.13810 -13.00139 -12.74004 -12.60460 -12.13975 -11.96564 -11.81110 -11.37204 -11.18259 -11.06165 -11.01815 -11.00982 -10.96982 -10.90397 -10.74162 -10.15288 -9.80694 -9.54431 -9.39237 -9.20669 -9.06125 -8.82514 -8.23091 -6.49269 -6.21260 -3.91561 1.85263 2.20433 2.31273 2.92602 3.03103 3.10645 3.23000 3.28380 3.32446 3.59524 3.69028 3.72397 4.12151 4.21244 4.34106 4.41220 4.64052 4.80440 4.88305 4.95401 5.02042 5.05776 5.08371 5.14039 5.18306 5.24187 5.27864 5.31375 5.38656 5.54066 5.60212 5.69242 5.80276 5.85622 5.89328 5.90759 6.04894 6.15974 6.20753 6.52885 6.68821 6.94851 7.03690 7.60344 7.73805 7.84412 8.35905 8.63236 9.24287 10.86176 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.001818 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.364883 B =15400.943794 C =16562.740621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.211 4.211 3 C 0.232 3.768 4 N -0.736 5.736 5 C 0.518 3.482 6 O -0.513 6.513 7 C 0.000 4.000 8 N -0.459 5.459 9 C 0.013 3.987 10 C -0.121 4.121 11 C 0.152 3.848 12 H 0.086 0.914 13 C -0.163 4.163 14 N -0.733 5.733 15 C 0.534 3.466 16 O -0.520 6.520 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.012 3.988 28 H 0.222 0.778 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.403 0.597 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.074 0.926 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 -24.843 -6.155 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.211 4.211 3 C 0.109 3.891 4 N -0.391 5.391 5 C 0.303 3.697 6 O -0.387 6.387 7 C -0.132 4.132 8 N -0.181 5.181 9 C -0.116 4.116 10 C -0.140 4.140 11 C 0.047 3.953 12 H 0.104 0.896 13 C -0.221 4.221 14 N -0.387 5.387 15 C 0.320 3.680 16 O -0.394 6.394 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.117 4.117 28 H 0.239 0.761 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.237 0.763 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.203 -24.684 -5.816 30.094 hybrid contribution 1.110 0.737 -0.954 1.639 sum -15.094 -23.946 -6.770 29.105 Atomic orbital electron populations 1.25065 0.95986 1.00595 0.97089 1.22932 0.94278 1.01032 1.02903 1.18040 0.83057 1.03460 0.84514 1.46013 1.07439 1.76436 1.09174 1.20547 0.81436 0.76203 0.91486 1.90739 1.54928 1.47131 1.45879 1.22602 0.92625 1.03552 0.94416 1.68405 1.05674 1.23829 1.20238 1.23997 0.96572 1.00201 0.90822 1.23267 0.99165 0.95692 0.95905 1.20899 0.93347 0.88503 0.92571 0.89598 1.22164 1.01255 1.01125 0.97595 1.46057 1.36807 1.10626 1.45199 1.20298 0.84616 0.81773 0.81316 1.90689 1.39566 1.77727 1.31409 1.23541 1.00286 1.01914 1.04726 1.85364 1.46154 0.97597 1.54320 1.22878 1.19332 0.98197 1.27960 0.90923 1.24988 0.96789 0.96708 0.95082 1.70019 1.37386 1.12680 1.30244 0.86171 0.80960 0.79335 0.79057 1.20279 1.20756 1.19685 1.24123 0.96786 0.90075 1.00706 0.76095 0.88996 0.89028 0.76313 0.87782 0.90512 0.88644 0.90630 0.87534 0.91616 0.91944 0.92391 0.76777 0.89238 0.89237 0.92208 0.90829 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 19.25 29.55 0.57 -0.30 16 2 C -0.21 -1.36 13.46 -37.12 -0.50 -1.86 16 3 C 0.23 1.58 6.15 -6.83 -0.04 1.54 16 4 N -0.74 -4.84 5.54 -63.16 -0.35 -5.19 16 5 C 0.52 4.75 7.87 -10.99 -0.09 4.66 16 6 O -0.51 -6.92 16.43 5.55 0.09 -6.82 16 7 C 0.00 0.00 5.28 -4.98 -0.03 -0.03 16 8 N -0.46 -4.13 5.65 -239.78 -1.35 -5.49 16 9 C 0.01 0.09 6.57 -2.77 -0.02 0.07 16 10 C -0.12 -1.01 3.49 -89.68 -0.31 -1.32 16 11 C 0.15 1.63 2.42 -67.93 -0.16 1.47 16 12 H 0.09 1.08 7.37 -51.93 -0.38 0.70 16 13 C -0.16 -1.64 9.29 37.16 0.35 -1.30 16 14 N -0.73 -9.33 5.08 -53.80 -0.27 -9.61 16 15 C 0.53 9.68 7.81 -10.98 -0.09 9.59 16 16 O -0.52 -11.44 15.53 5.56 0.09 -11.35 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.01 0.11 7.51 -2.77 -0.02 0.09 16 28 H 0.22 0.39 7.80 -54.09 -0.42 -0.04 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.40 1.68 8.45 -40.82 -0.34 1.34 16 32 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.08 0.45 7.38 -51.92 -0.38 0.07 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.50 7.43 -51.93 -0.39 0.11 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 4.05 8.60 -40.82 -0.35 3.70 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 0.71 7.29 -51.93 -0.38 0.33 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -37.60 402.78 -8.98 -46.58 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.82 Total: 1.89 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -1.24 Total: -45.73 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.60 -8.98 -46.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276341979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.730 kcal (2) G-P(sol) polarization free energy of solvation -37.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds