Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47524 * 318.46989 * 3 2 1 5 5 C 1.34778 * 120.00297 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99722 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99914 * 180.02562 * 5 4 3 8 8 N 1.46896 * 109.46760 * 180.02562 * 7 5 4 9 9 C 1.47961 * 111.00104 * 189.99954 * 8 7 5 10 10 C 1.53933 * 86.18149 * 222.41782 * 9 8 7 11 11 C 1.53001 * 113.73600 * 138.07861 * 10 9 8 12 12 H 1.08997 * 109.46855 * 305.00408 * 11 10 9 13 13 C 1.52996 * 109.47183 * 185.00212 * 11 10 9 14 14 N 1.46506 * 109.47094 * 64.99731 * 11 10 9 15 15 C 1.34771 * 120.00050 * 204.99856 * 14 11 10 16 16 O 1.21281 * 120.00071 * 0.02562 * 15 14 11 17 17 C 1.50699 * 120.00149 * 179.97438 * 15 14 11 18 18 S 1.81001 * 109.47256 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99871 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00167 * 359.97438 * 19 18 17 21 21 C 1.38793 * 119.99862 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00051 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00217 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46851 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47525 * 119.99634 * 23 21 19 26 26 H 1.48498 * 109.47610 * 240.00243 * 23 21 19 27 27 C 1.47964 * 111.00403 * 90.63812 * 8 7 5 28 28 H 4.40642 * 5.51342 * 180.02562 * 4 1 2 29 29 H 1.09006 * 109.46726 * 198.46816 * 3 2 1 30 30 H 1.08999 * 109.47187 * 78.47769 * 3 2 1 31 31 H 0.97006 * 119.99777 * 0.02562 * 4 3 2 32 32 H 1.08994 * 109.47065 * 60.00277 * 7 5 4 33 33 H 1.09001 * 109.47052 * 299.99516 * 7 5 4 34 34 H 1.08998 * 113.76224 * 108.09763 * 9 8 7 35 35 H 1.08998 * 113.85675 * 336.74969 * 9 8 7 36 36 H 1.09005 * 113.72913 * 269.25121 * 10 9 8 37 37 H 1.09002 * 109.47227 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.46864 * 300.04312 * 13 11 10 39 39 H 1.08995 * 109.47184 * 60.04591 * 13 11 10 40 40 H 0.97001 * 119.99465 * 25.00335 * 14 11 10 41 41 H 1.09001 * 109.46945 * 300.00654 * 17 15 14 42 42 H 1.09005 * 109.46723 * 60.00534 * 17 15 14 43 43 H 0.97006 * 119.99981 * 180.02562 * 22 21 19 44 44 H 1.09001 * 113.75615 * 23.26446 * 27 8 7 45 45 H 1.08994 * 113.75610 * 251.90145 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0330 0.9157 5 6 4.4600 -1.2164 1.0794 6 8 5.2478 -0.5254 0.4689 7 6 4.9629 -2.2803 2.0210 8 7 6.4318 -2.2786 2.0219 9 6 6.9629 -3.4560 2.7438 10 6 7.9833 -2.4856 3.3656 11 6 8.2226 -2.7173 4.8589 12 1 7.2711 -2.6807 5.3893 13 6 9.1511 -1.6290 5.4015 14 7 8.8415 -4.0304 5.0564 15 6 8.6967 -4.6738 6.2317 16 8 8.0536 -4.1659 7.1258 17 6 9.3328 -6.0248 6.4346 18 16 8.9592 -6.6234 8.1014 19 6 9.8002 -8.1713 8.0662 20 1 10.3324 -8.4767 7.1773 21 6 9.7779 -8.9987 9.1803 22 7 9.1290 -8.6268 10.2634 23 14 10.6689 -10.6401 9.1429 24 1 11.3160 -10.8219 7.8186 25 1 11.7037 -10.6662 10.2077 26 1 9.6950 -11.7374 9.3720 27 6 6.9605 -1.3746 3.0671 28 1 -1.0498 -0.0003 0.0001 29 1 3.0088 0.9756 0.3256 30 1 3.0094 -0.2045 -1.0069 31 1 2.5048 -1.5856 1.4043 32 1 4.6005 -3.2550 1.6947 33 1 4.5991 -2.0757 3.0279 34 1 7.4109 -4.2057 2.0916 35 1 6.2659 -3.8821 3.4653 36 1 8.9083 -2.3972 2.7958 37 1 9.3220 -1.7943 6.4653 38 1 10.1024 -1.6651 4.8705 39 1 8.6902 -0.6521 5.2554 40 1 9.3555 -4.4367 4.3411 41 1 8.9378 -6.7264 5.6998 42 1 10.4126 -5.9400 6.3122 43 1 9.1137 -9.2049 11.0423 44 1 6.2615 -1.1904 3.8830 45 1 7.4064 -0.4613 2.6732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276341980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = 19.441571 kcal Electronic energy + Delta-G solvation = -25545.331062 eV Core-core repulsion = 21692.017197 eV Total energy + Delta-G solvation = -3853.313865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91493 -39.70131 -38.83000 -35.90264 -35.15586 -33.12468 -32.44183 -31.87392 -30.39364 -28.53937 -27.69538 -26.35340 -25.50242 -25.11701 -22.21007 -20.87953 -20.39132 -19.87330 -19.18037 -17.86057 -17.37618 -16.83538 -16.44492 -16.36630 -16.14555 -15.63433 -15.07658 -14.91289 -14.81764 -14.70354 -14.27765 -14.01773 -13.81022 -13.45778 -13.36082 -13.13533 -13.03942 -12.73027 -12.64232 -12.17803 -11.94344 -11.67773 -11.38365 -11.25184 -11.08492 -11.04476 -11.02849 -11.00728 -10.86511 -10.75335 -10.16100 -9.81406 -9.56134 -9.40535 -9.19005 -9.08671 -8.85149 -8.24380 -6.51158 -6.23129 -3.93505 1.83866 2.18689 2.29727 2.92396 3.00342 3.08903 3.20604 3.27108 3.31501 3.60852 3.65683 3.70603 4.19097 4.19753 4.25910 4.47259 4.64606 4.82844 4.88616 4.97805 4.99651 5.05413 5.08854 5.12315 5.15812 5.22038 5.29853 5.34204 5.43328 5.50946 5.57715 5.69808 5.83819 5.84290 5.88429 5.89799 6.04676 6.13655 6.22752 6.53135 6.67005 6.93315 7.02445 7.58809 7.72417 7.82661 8.34256 8.61660 9.22586 10.84333 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019085 B = 0.001697 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.804804 B =16497.285020 C =17185.582134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.212 4.212 3 C 0.232 3.768 4 N -0.736 5.736 5 C 0.519 3.481 6 O -0.515 6.515 7 C -0.001 4.001 8 N -0.459 5.459 9 C 0.009 3.991 10 C -0.122 4.122 11 C 0.153 3.847 12 H 0.086 0.914 13 C -0.163 4.163 14 N -0.733 5.733 15 C 0.533 3.467 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.016 3.984 28 H 0.222 0.778 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.403 0.597 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 16.067 -20.686 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.212 4.212 3 C 0.110 3.890 4 N -0.391 5.391 5 C 0.304 3.696 6 O -0.389 6.389 7 C -0.132 4.132 8 N -0.181 5.181 9 C -0.120 4.120 10 C -0.141 4.141 11 C 0.047 3.953 12 H 0.104 0.896 13 C -0.221 4.221 14 N -0.387 5.387 15 C 0.320 3.680 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.113 4.113 28 H 0.239 0.761 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.238 0.762 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.972 17.495 -20.156 29.251 hybrid contribution 0.572 -2.243 -0.367 2.343 sum -11.400 15.252 -20.523 27.996 Atomic orbital electron populations 1.25072 0.95996 0.98572 0.99009 1.22929 0.94283 1.02129 1.01896 1.18031 0.83055 0.92776 0.95160 1.46027 1.07475 1.38598 1.46974 1.20562 0.81411 0.84694 0.82899 1.90726 1.54979 1.46464 1.46697 1.22610 0.92606 0.99180 0.98847 1.68404 1.05696 1.04981 1.39003 1.24029 0.96888 0.94483 0.96583 1.23287 0.99135 0.96359 0.95353 1.20895 0.97547 0.83147 0.93711 0.89617 1.22157 0.99611 0.98026 1.02335 1.46042 1.56257 1.19959 1.16422 1.20299 0.79850 0.86392 0.81505 1.90695 1.39691 1.67596 1.41345 1.23537 1.03368 0.95807 1.07719 1.85384 1.69878 1.21507 1.06703 1.22913 1.38151 1.04285 1.02967 0.90876 1.24988 0.95400 0.98630 0.94557 1.70028 1.39832 1.37184 1.03266 0.86121 0.79170 0.81965 0.78266 1.19608 1.20560 1.20584 1.24034 0.96541 0.97565 0.93128 0.76090 0.89071 0.89036 0.76240 0.87681 0.90506 0.88761 0.90551 0.87518 0.91634 0.92417 0.91898 0.76828 0.89271 0.89246 0.92247 0.90862 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 19.25 29.55 0.57 -0.26 16 2 C -0.21 -1.31 13.46 -37.12 -0.50 -1.81 16 3 C 0.23 1.50 6.15 -6.83 -0.04 1.46 16 4 N -0.74 -4.72 5.54 -63.16 -0.35 -5.07 16 5 C 0.52 4.64 7.87 -10.98 -0.09 4.56 16 6 O -0.52 -6.68 16.43 5.56 0.09 -6.59 16 7 C 0.00 0.00 5.28 -4.98 -0.03 -0.03 16 8 N -0.46 -4.19 5.65 -239.74 -1.35 -5.55 16 9 C 0.01 0.07 7.38 -2.77 -0.02 0.05 16 10 C -0.12 -1.01 3.35 -89.69 -0.30 -1.31 16 11 C 0.15 1.63 2.29 -67.93 -0.16 1.48 16 12 H 0.09 1.08 7.48 -51.93 -0.39 0.69 16 13 C -0.16 -1.72 9.44 37.16 0.35 -1.37 16 14 N -0.73 -9.02 4.94 -53.81 -0.27 -9.28 16 15 C 0.53 9.45 7.81 -10.99 -0.09 9.36 16 16 O -0.52 -11.28 15.52 5.56 0.09 -11.20 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.53 -15.08 9.50 30.94 0.29 -14.79 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 23 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.02 0.14 7.41 -2.77 -0.02 0.12 16 28 H 0.22 0.36 7.80 -54.10 -0.42 -0.06 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 1.72 8.45 -40.82 -0.34 1.37 16 32 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.08 0.46 7.38 -51.93 -0.38 0.08 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.40 3.84 8.60 -40.82 -0.35 3.49 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.07 0.57 7.36 -51.93 -0.38 0.19 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -37.05 404.12 -8.97 -46.02 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.87 Total: 1.80 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.10 Total: -3.36 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -1.24 Total: -45.13 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.18 Total: -17.78 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.05 -8.97 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276341980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.462 kcal (2) G-P(sol) polarization free energy of solvation -37.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds