Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47600 * 2 1 4 4 C 1.53004 * 109.47406 * 119.99964 * 2 1 3 5 5 N 1.46492 * 109.47459 * 174.99891 * 4 2 1 6 6 C 1.46496 * 120.00267 * 269.99746 * 5 4 2 7 7 C 1.34777 * 119.99806 * 90.00004 * 5 4 2 8 8 O 1.21627 * 120.00269 * 2.68497 * 7 5 4 9 9 C 1.47270 * 119.99941 * 182.68153 * 7 5 4 10 10 C 1.35205 * 123.14144 * 173.13328 * 9 7 5 11 11 S 1.70944 * 108.82686 * 179.97438 * 10 9 7 12 12 C 1.70772 * 91.12787 * 359.97438 * 11 10 9 13 13 C 1.50697 * 124.71656 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.86853 * 164.29899 * 13 12 11 15 15 C 1.54101 * 109.88163 * 285.30687 * 13 12 11 16 16 C 1.54816 * 104.18858 * 121.45498 * 15 13 12 17 17 C 1.54991 * 102.08954 * 20.88100 * 16 15 13 18 18 O 1.43746 * 109.88201 * 43.29321 * 13 12 11 19 19 N 1.28642 * 110.56114 * 0.02562 * 12 11 10 20 20 N 1.46502 * 109.47367 * 239.99874 * 2 1 3 21 21 C 1.36936 * 119.99838 * 84.99831 * 20 2 1 22 22 H 1.08003 * 120.00007 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99876 * 180.02562 * 21 20 2 24 24 N 1.31623 * 119.99803 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99911 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46968 * 59.99926 * 25 23 21 27 27 H 1.48499 * 109.46954 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47204 * 299.99974 * 25 23 21 29 29 H 1.09002 * 109.47447 * 299.99785 * 1 2 3 30 30 H 1.08997 * 109.46863 * 60.00220 * 1 2 3 31 31 H 1.09006 * 109.46948 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46817 * 54.99394 * 4 2 1 33 33 H 1.09002 * 109.46750 * 295.00589 * 4 2 1 34 34 H 1.08996 * 109.47643 * 263.97630 * 6 5 4 35 35 H 1.09001 * 109.46907 * 23.97921 * 6 5 4 36 36 H 1.09005 * 109.47435 * 143.97130 * 6 5 4 37 37 H 1.07996 * 125.58583 * 359.71520 * 10 9 7 38 38 H 1.09001 * 110.48882 * 240.13642 * 15 13 12 39 39 H 1.09004 * 110.48660 * 2.78012 * 15 13 12 40 40 H 1.09001 * 110.90400 * 139.08285 * 16 15 13 41 41 H 1.08997 * 110.90355 * 262.65063 * 16 15 13 42 42 H 1.09003 * 110.61572 * 81.48119 * 17 16 15 43 43 H 1.09005 * 110.61674 * 204.47151 * 17 16 15 44 44 H 0.97009 * 119.99862 * 265.00232 * 20 2 1 45 45 H 0.96998 * 119.99342 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1258 -1.9920 0.5613 7 6 4.2675 0.1492 1.7156 8 8 3.7490 1.0929 2.2812 9 6 5.7340 0.0725 1.6045 10 6 6.5576 1.0746 1.9860 11 16 8.1743 0.5997 1.6984 12 6 7.6579 -0.9087 1.0866 13 6 8.5775 -1.9897 0.5800 14 1 8.0368 -2.9336 0.5103 15 6 9.1319 -1.6000 -0.8040 16 6 10.6677 -1.5916 -0.6090 17 6 10.8399 -2.4789 0.6501 18 8 9.6989 -2.1334 1.4678 19 7 6.3747 -0.9938 1.1184 20 7 2.0184 -0.6906 -1.1961 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4241 23 6 2.6114 -0.6620 -3.5093 24 7 2.9235 -1.9394 -3.4503 25 14 2.7905 0.2700 -5.1182 26 1 3.7465 1.3917 -4.9366 27 1 3.2994 -0.6484 -6.1683 28 1 1.4685 0.8078 -5.5285 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 4.3798 -2.7255 1.3265 35 1 3.4315 -2.4363 -0.1518 36 1 5.0318 -1.6813 0.0409 37 1 6.2450 2.0218 2.4002 38 1 8.8463 -2.3401 -1.5516 39 1 8.7784 -0.6098 -1.0916 40 1 11.1714 -2.0339 -1.4686 41 1 11.0309 -0.5804 -0.4256 42 1 10.8118 -3.5351 0.3820 43 1 11.7695 -2.2373 1.1656 44 1 2.2491 -1.6319 -1.1525 45 1 3.2462 -2.3967 -4.2425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277818691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -3.663106 kcal Electronic energy + Delta-G solvation = -27952.260265 eV Core-core repulsion = 24097.944506 eV Total energy + Delta-G solvation = -3854.315759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59319 -39.65291 -38.37584 -36.24972 -34.09393 -32.54853 -32.02318 -31.60213 -28.84854 -28.81715 -27.01575 -26.11403 -24.79917 -23.69399 -22.89928 -22.01690 -20.73651 -20.03541 -19.30536 -18.03461 -17.21818 -16.86838 -16.44486 -16.05580 -15.48018 -15.43774 -15.37215 -14.64199 -14.31585 -14.08255 -13.93083 -13.75284 -13.34611 -13.17566 -13.07304 -12.35974 -12.17864 -12.12458 -12.07992 -12.02043 -11.85578 -11.61000 -11.55846 -11.32853 -11.22490 -11.05843 -10.82227 -10.67390 -10.35433 -10.22433 -10.06936 -9.77690 -9.66178 -9.59776 -9.24936 -8.88557 -8.87489 -8.01992 -6.90388 -5.73933 -3.00383 0.53242 1.22493 1.65248 2.07842 3.28423 3.44104 3.46905 3.48333 3.49959 3.73016 4.03963 4.24530 4.57548 4.59431 4.61859 4.78730 4.93813 5.09610 5.16459 5.32404 5.35636 5.48939 5.50394 5.53065 5.59222 5.69265 5.69838 5.74960 5.79782 5.92438 6.02716 6.16582 6.21602 6.33267 6.42911 6.46082 6.67206 6.82640 6.90212 6.98045 7.21245 7.46646 7.73542 7.85035 8.45607 8.53707 9.56558 10.13609 10.49679 11.48987 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010298 B = 0.004024 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.356625 B = 6955.735779 C = 8635.769383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.155 3.845 3 H 0.050 0.950 4 C 0.109 3.891 5 N -0.574 5.574 6 C 0.083 3.917 7 C 0.590 3.410 8 O -0.549 6.549 9 C 0.024 3.976 10 C -0.232 4.232 11 S 0.226 5.774 12 C 0.015 3.985 13 C 0.157 3.843 14 H 0.105 0.895 15 C -0.149 4.149 16 C -0.156 4.156 17 C 0.046 3.954 18 O -0.368 6.368 19 N -0.418 5.418 20 N -0.720 5.720 21 C -0.230 4.230 22 H 0.067 0.933 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.903 3.097 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.188 0.812 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.382 0.618 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.059 -1.011 10.272 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.068 0.932 4 C -0.015 4.015 5 N -0.302 5.302 6 C -0.060 4.060 7 C 0.375 3.625 8 O -0.429 6.429 9 C -0.111 4.111 10 C -0.374 4.374 11 S 0.483 5.517 12 C -0.264 4.264 13 C 0.096 3.904 14 H 0.122 0.878 15 C -0.188 4.188 16 C -0.193 4.193 17 C -0.031 4.031 18 O -0.287 6.287 19 N -0.135 5.135 20 N -0.363 5.363 21 C -0.362 4.362 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.583 5.583 25 Si 0.734 3.266 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.206 0.794 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.487 -0.442 10.605 19.608 hybrid contribution -0.960 0.163 -1.296 1.621 sum 15.527 -0.278 9.309 18.106 Atomic orbital electron populations 1.22365 0.98725 1.00864 1.00262 1.20656 0.92016 0.96205 0.86740 0.93169 1.21920 0.78612 1.01393 0.99550 1.47433 1.06465 1.20993 1.55346 1.22273 1.00443 0.86330 0.96980 1.17034 0.83903 0.82479 0.79093 1.90755 1.73543 1.33323 1.45234 1.20450 0.96354 0.90389 1.03884 1.26647 0.97462 1.05831 1.07457 1.82695 1.04893 1.10113 1.53992 1.27049 0.94133 0.99812 1.05405 1.21019 0.86217 0.94929 0.88278 0.87774 1.23061 0.95219 1.04307 0.96170 1.23173 0.95789 1.01431 0.98953 1.23663 0.89595 0.98737 0.91080 1.88966 1.17975 1.90783 1.30929 1.67272 1.05503 1.26252 1.14489 1.42462 1.78131 1.10493 1.05182 1.19187 1.35911 0.93750 0.87323 0.91544 1.24645 1.02480 0.95959 0.97747 1.69631 1.51464 1.08487 1.28764 0.86331 0.77767 0.78606 0.83888 1.21547 1.21756 1.21373 0.94282 0.92562 0.93436 0.90740 0.90060 0.93966 0.90428 0.88061 0.79434 0.88945 0.89803 0.89554 0.90215 0.91476 0.88492 0.78238 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.49 37.16 0.35 -2.68 16 2 C 0.15 3.28 3.20 -67.93 -0.22 3.06 16 3 H 0.05 1.18 8.08 -51.93 -0.42 0.76 16 4 C 0.11 2.00 5.04 -4.04 -0.02 1.98 16 5 N -0.57 -11.05 2.73 -182.91 -0.50 -11.55 16 6 C 0.08 1.53 8.98 59.84 0.54 2.06 16 7 C 0.59 11.71 7.65 -12.59 -0.10 11.61 16 8 O -0.55 -11.80 16.29 5.25 0.09 -11.72 16 9 C 0.02 0.42 6.49 -84.52 -0.55 -0.13 16 10 C -0.23 -3.36 10.62 29.65 0.31 -3.05 16 11 S 0.23 2.62 22.72 -107.50 -2.44 0.18 16 12 C 0.01 0.20 6.10 -13.62 -0.08 0.12 16 13 C 0.16 1.75 3.94 -27.31 -0.11 1.65 16 14 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.15 -1.40 6.63 -25.20 -0.17 -1.57 16 16 C -0.16 -1.06 7.16 -24.72 -0.18 -1.24 16 17 C 0.05 0.32 7.72 38.21 0.29 0.62 16 18 O -0.37 -3.90 11.01 -35.23 -0.39 -4.29 16 19 N -0.42 -6.82 6.76 -8.51 -0.06 -6.88 16 20 N -0.72 -18.00 4.57 -53.42 -0.24 -18.24 16 21 C -0.23 -6.45 9.93 -15.06 -0.15 -6.60 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 25 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.24 8.07 -51.93 -0.42 0.83 16 33 H 0.08 1.44 7.38 -51.93 -0.38 1.05 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.56 5.79 -51.93 -0.30 1.26 16 36 H 0.10 1.99 5.29 -51.93 -0.27 1.72 16 37 H 0.19 2.47 8.04 -52.49 -0.42 2.05 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.88 7.69 -51.93 -0.40 0.48 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.38 9.85 5.41 -40.82 -0.22 9.62 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -32.94 379.77 -8.90 -41.83 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.61 Total: 8.76 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.16 Total: 5.38 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.08 Total: -63.40 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.30 Total: -16.00 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.44 Total: 0.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.94 -8.90 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277818691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.171 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds