Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46892 * 2 1 4 4 C 1.52998 * 109.47418 * 120.00155 * 2 1 3 5 5 N 1.46498 * 109.47548 * 175.00221 * 4 2 1 6 6 C 1.46500 * 119.99927 * 89.99247 * 5 4 2 7 7 C 1.34771 * 119.99819 * 270.00541 * 5 4 2 8 8 O 1.21629 * 120.00243 * 5.11895 * 7 5 4 9 9 C 1.47270 * 119.99823 * 185.12723 * 7 5 4 10 10 C 1.35205 * 123.13982 * 186.30788 * 9 7 5 11 11 S 1.70941 * 108.82806 * 179.90418 * 10 9 7 12 12 C 1.70768 * 91.12699 * 0.30479 * 11 10 9 13 13 C 1.50704 * 124.72195 * 179.81865 * 12 11 10 14 14 H 1.08998 * 110.33089 * 197.25369 * 13 12 11 15 15 C 1.54485 * 110.37120 * 74.99941 * 13 12 11 16 16 C 1.54506 * 104.06103 * 217.19246 * 15 13 12 17 17 C 1.54474 * 104.06410 * 359.97438 * 16 15 13 18 18 O 1.44420 * 104.80283 * 23.98223 * 17 16 15 19 19 N 1.28643 * 110.55989 * 359.82353 * 12 11 10 20 20 N 1.46504 * 109.47018 * 240.00333 * 2 1 3 21 21 C 1.36939 * 119.99866 * 85.00095 * 20 2 1 22 22 H 1.08000 * 120.00322 * 359.97438 * 21 20 2 23 23 C 1.38812 * 119.99548 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00042 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99722 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47337 * 90.00095 * 25 23 21 27 27 H 1.48506 * 109.46925 * 209.99570 * 25 23 21 28 28 H 1.48497 * 109.47124 * 329.99660 * 25 23 21 29 29 H 1.08993 * 109.47103 * 59.99533 * 1 2 3 30 30 H 1.08997 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47089 * 299.99936 * 1 2 3 32 32 H 1.09005 * 109.46755 * 294.99877 * 4 2 1 33 33 H 1.09001 * 109.47280 * 54.99772 * 4 2 1 34 34 H 1.09009 * 109.46721 * 95.44020 * 6 5 4 35 35 H 1.08994 * 109.47398 * 215.43847 * 6 5 4 36 36 H 1.08993 * 109.47559 * 335.44408 * 6 5 4 37 37 H 1.08004 * 125.59066 * 0.02919 * 10 9 7 38 38 H 1.09001 * 110.50835 * 335.83727 * 15 13 12 39 39 H 1.09001 * 110.50596 * 98.41027 * 15 13 12 40 40 H 1.08997 * 110.51080 * 118.65000 * 16 15 13 41 41 H 1.09001 * 110.50873 * 241.21336 * 16 15 13 42 42 H 1.09005 * 110.36922 * 142.81100 * 17 16 15 43 43 H 1.08997 * 110.37491 * 265.03318 * 17 16 15 44 44 H 0.96999 * 119.99348 * 264.99230 * 20 2 1 45 45 H 0.96998 * 119.99752 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.3344 0.2342 1.7612 7 6 4.0758 -1.8985 0.6115 8 8 3.3869 -2.7327 0.0556 9 6 5.5391 -2.0602 0.6518 10 6 6.1929 -3.0407 -0.0108 11 16 7.8689 -2.8853 0.2873 12 6 7.5995 -1.5265 1.2860 13 6 8.6823 -0.7526 1.9930 14 1 8.2541 -0.1429 2.7886 15 6 9.4514 0.1352 0.9895 16 6 10.9155 0.0735 1.4791 17 6 10.8578 -0.8437 2.7208 18 8 9.6770 -1.6526 2.5274 19 7 6.3436 -1.2555 1.3510 20 7 2.0184 -0.6906 -1.1963 21 6 2.1491 -0.0073 -2.3758 22 1 1.8919 1.0405 -2.4244 23 6 2.6113 -0.6618 -3.5093 24 7 2.9243 -1.9389 -3.4502 25 14 2.7891 0.2700 -5.1185 26 1 4.1513 0.8550 -5.2040 27 1 2.5782 -0.6615 -6.2558 28 1 1.7790 1.3570 -5.1752 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 4.6225 -0.0372 2.7769 35 1 5.2288 0.3607 1.1513 36 1 3.7725 1.1679 1.7802 37 1 5.7321 -3.7970 -0.6290 38 1 9.3686 -0.2690 -0.0194 39 1 9.0785 1.1590 1.0217 40 1 11.5566 -0.3611 0.7122 41 1 11.2690 1.0677 1.7526 42 1 11.7458 -1.4740 2.7685 43 1 10.7671 -0.2478 3.6289 44 1 2.2491 -1.6317 -1.1526 45 1 3.2476 -2.3961 -4.2422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277818692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -2.514204 kcal Electronic energy + Delta-G solvation = -28027.528073 eV Core-core repulsion = 24173.262135 eV Total energy + Delta-G solvation = -3854.265939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47173 -39.63611 -38.29861 -35.83556 -34.20371 -32.53900 -31.88896 -31.55832 -28.75388 -28.59749 -27.05286 -26.11888 -24.76761 -23.57860 -22.99656 -21.87225 -20.77913 -19.75903 -19.15261 -18.10375 -17.07221 -16.71912 -16.43410 -15.93269 -15.55177 -15.30186 -15.25210 -14.68502 -14.20655 -14.05925 -13.97992 -13.66248 -13.18057 -12.95107 -12.78482 -12.49197 -12.26249 -12.12876 -12.06045 -11.93456 -11.86354 -11.70574 -11.55635 -11.33598 -11.12379 -11.03632 -10.76351 -10.58134 -10.28001 -10.27211 -9.97540 -9.64583 -9.52577 -9.42215 -9.27990 -8.76325 -8.72559 -7.93294 -6.72704 -5.54870 -2.83676 0.67739 1.33424 1.78093 2.20928 3.27493 3.49457 3.54400 3.56160 3.57061 3.94477 4.06819 4.25346 4.53470 4.59420 4.71671 4.85058 4.89029 5.02961 5.30672 5.31859 5.34833 5.48110 5.54764 5.58431 5.63599 5.64931 5.69523 5.70328 5.76905 5.93070 6.05589 6.11045 6.17536 6.34781 6.36859 6.40142 6.50377 6.78487 6.90463 7.07122 7.24793 7.52575 7.83459 7.95580 8.61323 8.81580 9.74556 10.39415 10.79585 11.65498 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.003610 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.429850 B = 7754.240448 C = 8627.693055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.042 0.958 4 C 0.111 3.889 5 N -0.593 5.593 6 C 0.096 3.904 7 C 0.597 3.403 8 O -0.504 6.504 9 C 0.023 3.977 10 C -0.216 4.216 11 S 0.230 5.770 12 C 0.005 3.995 13 C 0.158 3.842 14 H 0.101 0.899 15 C -0.148 4.148 16 C -0.154 4.154 17 C 0.045 3.955 18 O -0.366 6.366 19 N -0.425 5.425 20 N -0.721 5.721 21 C -0.235 4.235 22 H 0.064 0.936 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.897 3.103 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.284 1.284 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.193 0.807 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.400 0.600 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.301 3.071 15.277 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.060 0.940 4 C -0.012 4.012 5 N -0.325 5.325 6 C -0.048 4.048 7 C 0.381 3.619 8 O -0.378 6.378 9 C -0.112 4.112 10 C -0.358 4.358 11 S 0.487 5.513 12 C -0.273 4.273 13 C 0.097 3.903 14 H 0.119 0.881 15 C -0.187 4.187 16 C -0.192 4.192 17 C -0.031 4.031 18 O -0.285 6.285 19 N -0.143 5.143 20 N -0.368 5.368 21 C -0.367 4.367 22 H 0.082 0.918 23 C -0.210 4.210 24 N -0.568 5.568 25 Si 0.729 3.271 26 H -0.221 1.221 27 H -0.219 1.219 28 H -0.210 1.210 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.210 0.790 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.240 0.760 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.608 2.382 14.907 22.444 hybrid contribution -0.856 0.753 -1.164 1.630 sum 15.752 3.135 13.743 21.138 Atomic orbital electron populations 1.22411 0.99156 1.00954 0.99881 1.20651 0.91977 0.95569 0.87579 0.93960 1.21884 0.78944 1.02048 0.98329 1.47322 1.06635 1.20676 1.57908 1.21860 0.95370 0.89192 0.98335 1.16862 0.84428 0.82147 0.78452 1.90803 1.62328 1.43271 1.41434 1.20441 0.96076 0.94387 1.00281 1.26769 0.98442 1.05050 1.05500 1.82736 1.03081 1.25487 1.40025 1.26594 0.95151 1.01521 1.04073 1.21148 0.86166 0.88247 0.94707 0.88138 1.23043 0.94460 1.01195 0.99956 1.22956 0.96840 1.00990 0.98448 1.23443 0.88657 0.93740 0.97292 1.89170 1.22105 1.32706 1.84473 1.67173 1.01263 1.25998 1.19823 1.42814 1.77547 1.11927 1.04545 1.19209 1.36226 0.93566 0.87728 0.91839 1.24712 1.02764 0.95901 0.97602 1.69756 1.50690 1.08289 1.28075 0.86336 0.77551 0.78667 0.84546 1.22135 1.21910 1.20954 0.92679 0.93370 0.94637 0.90943 0.90404 0.93273 0.89862 0.92451 0.79012 0.90072 0.89275 0.90247 0.90055 0.88584 0.91751 0.76014 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.49 37.16 0.35 -2.78 16 2 C 0.15 3.29 3.20 -67.93 -0.22 3.07 16 3 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 4 C 0.11 2.04 5.11 -4.04 -0.02 2.02 16 5 N -0.59 -11.29 2.77 -182.91 -0.51 -11.80 16 6 C 0.10 1.48 9.19 59.85 0.55 2.03 16 7 C 0.60 12.88 7.05 -12.59 -0.09 12.79 16 8 O -0.50 -12.69 13.78 5.25 0.07 -12.62 16 9 C 0.02 0.42 6.42 -84.53 -0.54 -0.12 16 10 C -0.22 -3.68 10.62 29.65 0.31 -3.37 16 11 S 0.23 2.99 22.69 -107.50 -2.44 0.55 16 12 C 0.01 0.07 6.26 -13.61 -0.09 -0.02 16 13 C 0.16 1.64 3.81 -27.10 -0.10 1.53 16 14 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.15 -1.24 6.62 -25.16 -0.17 -1.40 16 16 C -0.15 -0.94 7.09 -25.17 -0.18 -1.11 16 17 C 0.05 0.30 7.63 37.93 0.29 0.59 16 18 O -0.37 -3.76 11.13 -35.23 -0.39 -4.15 16 19 N -0.42 -6.78 6.96 -8.51 -0.06 -6.84 16 20 N -0.72 -19.61 4.52 -53.42 -0.24 -19.86 16 21 C -0.24 -6.94 9.93 -15.06 -0.15 -7.09 16 22 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.92 -29.41 13.06 55.49 0.72 -28.68 16 25 Si 0.90 23.40 29.55 -169.99 -5.02 18.38 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 28 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 33 H 0.08 1.52 7.50 -51.93 -0.39 1.13 16 34 H 0.05 0.67 8.07 -51.92 -0.42 0.25 16 35 H 0.08 1.37 5.84 -51.93 -0.30 1.07 16 36 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 37 H 0.19 3.34 8.04 -52.48 -0.42 2.92 16 38 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.40 11.78 4.79 -40.82 -0.20 11.59 16 45 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -36.18 379.43 -9.03 -45.21 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.74 Total: 8.44 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.14 Total: 5.65 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -0.08 Total: -67.17 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.32 Total: -16.78 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.44 Total: 0.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.18 -9.03 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277818692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.698 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds