Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47138 * 2 1 4 4 C 1.52994 * 109.47278 * 239.99663 * 2 1 3 5 5 N 1.46500 * 109.47171 * 185.00133 * 4 2 1 6 6 C 1.46492 * 119.99851 * 90.00537 * 5 4 2 7 7 C 1.34777 * 120.00011 * 269.99717 * 5 4 2 8 8 O 1.21629 * 119.99923 * 5.45603 * 7 5 4 9 9 C 1.47261 * 120.00057 * 185.44909 * 7 5 4 10 10 C 1.35204 * 123.14442 * 186.34350 * 9 7 5 11 11 S 1.70946 * 108.82933 * 179.86923 * 10 9 7 12 12 C 1.70770 * 91.12571 * 0.32968 * 11 10 9 13 13 C 1.50703 * 124.71647 * 179.83798 * 12 11 10 14 14 H 1.08998 * 110.33077 * 197.20567 * 13 12 11 15 15 C 1.54484 * 110.36893 * 74.96183 * 13 12 11 16 16 C 1.54514 * 104.06198 * 217.18903 * 15 13 12 17 17 C 1.54482 * 104.06049 * 0.02562 * 16 15 13 18 18 O 1.44424 * 110.37249 * 319.58167 * 13 12 11 19 19 N 1.28640 * 110.56372 * 359.80326 * 12 11 10 20 20 N 1.46500 * 109.46881 * 120.00077 * 2 1 3 21 21 C 1.36943 * 120.00017 * 275.00212 * 20 2 1 22 22 H 1.07999 * 119.99660 * 359.97438 * 21 20 2 23 23 C 1.38809 * 119.99974 * 180.02562 * 21 20 2 24 24 N 1.31623 * 120.00389 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00089 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46802 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47328 * 119.99202 * 25 23 21 28 28 H 1.48492 * 109.47180 * 239.99507 * 25 23 21 29 29 H 1.08995 * 109.47138 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46876 * 300.00288 * 1 2 3 31 31 H 1.09001 * 109.46886 * 59.99643 * 1 2 3 32 32 H 1.09001 * 109.47341 * 305.00320 * 4 2 1 33 33 H 1.09005 * 109.46951 * 65.00008 * 4 2 1 34 34 H 1.09007 * 109.47655 * 95.40577 * 6 5 4 35 35 H 1.09001 * 109.47413 * 215.40602 * 6 5 4 36 36 H 1.09000 * 109.47322 * 335.40312 * 6 5 4 37 37 H 1.08003 * 125.58384 * 0.02562 * 10 9 7 38 38 H 1.08998 * 110.51095 * 335.83056 * 15 13 12 39 39 H 1.08995 * 110.51173 * 98.40591 * 15 13 12 40 40 H 1.09000 * 110.51318 * 118.64189 * 16 15 13 41 41 H 1.08997 * 110.50802 * 241.21727 * 16 15 13 42 42 H 1.08994 * 110.37422 * 142.81243 * 17 16 15 43 43 H 1.09001 * 110.36705 * 265.03680 * 17 16 15 44 44 H 0.96996 * 120.00464 * 94.99648 * 20 2 1 45 45 H 0.96991 * 120.00369 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1258 -1.9920 -0.5611 7 6 4.2676 0.1491 -1.7155 8 8 3.7519 1.1619 -2.1487 9 6 5.7307 -0.0112 -1.7647 10 6 6.5692 0.9726 -2.1610 11 16 8.1762 0.3961 -2.0740 12 6 7.6356 -1.1272 -1.5231 13 6 8.5361 -2.2900 -1.1944 14 1 7.9623 -3.2161 -1.1621 15 6 9.2501 -2.0525 0.1548 16 6 10.6635 -2.6388 -0.0600 17 6 10.6363 -3.1606 -1.5138 18 8 9.6023 -2.3900 -2.1635 19 7 6.3529 -1.1439 -1.4271 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8925 1.0405 2.4242 23 6 2.6122 -0.6618 3.5091 24 7 2.9252 -1.9389 3.4500 25 14 2.7912 0.2702 5.1181 26 1 2.3772 1.6827 4.9206 27 1 1.9308 -0.3581 6.1525 28 1 4.2082 0.2273 5.5600 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 4.3698 -2.7303 -1.3251 35 1 5.0376 -1.6832 -0.0499 36 1 3.4356 -2.4299 0.1600 37 1 6.2725 1.9615 -2.4780 38 1 9.3082 -0.9863 0.3737 39 1 8.7341 -2.5787 0.9578 40 1 11.4202 -1.8625 0.0526 41 1 10.8484 -3.4552 0.6380 42 1 11.5983 -2.9887 -1.9967 43 1 10.3880 -4.2217 -1.5315 44 1 2.2489 -1.6318 1.1527 45 1 3.2485 -2.3961 4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277818693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -5.549396 kcal Electronic energy + Delta-G solvation = -27819.900474 eV Core-core repulsion = 23965.502920 eV Total energy + Delta-G solvation = -3854.397554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59233 -39.66612 -38.40547 -36.24571 -34.10497 -32.53407 -32.03396 -31.64174 -28.86250 -28.81551 -27.00857 -26.15481 -24.85685 -23.72948 -22.96572 -21.85515 -20.80230 -20.04620 -19.33724 -18.03703 -17.22126 -16.78682 -16.45273 -16.08845 -15.62548 -15.38725 -15.36464 -14.65080 -14.39326 -14.11089 -14.02252 -13.74231 -13.30447 -13.16296 -13.04969 -12.34052 -12.20675 -12.13065 -12.06713 -12.01856 -11.88952 -11.68881 -11.57681 -11.31982 -11.21744 -11.00540 -10.84628 -10.66160 -10.33467 -10.26725 -10.01083 -9.80995 -9.68389 -9.61673 -9.37328 -8.90648 -8.89172 -8.03668 -6.90008 -5.74110 -3.00451 0.50212 1.19516 1.62905 2.05036 3.22640 3.43356 3.46782 3.50246 3.51978 3.70229 4.05804 4.27146 4.54521 4.60220 4.62277 4.79945 4.92690 5.01329 5.13797 5.28925 5.35433 5.40524 5.50708 5.53842 5.59355 5.68505 5.68883 5.71356 5.78819 5.90541 5.99373 6.16573 6.22111 6.33891 6.38997 6.43003 6.62596 6.79743 6.90842 6.94463 7.21200 7.43734 7.75051 7.83987 8.45551 8.52717 9.56671 10.13663 10.49536 11.49015 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.003754 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.064779 B = 7456.350196 C = 8973.248645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.110 3.890 5 N -0.575 5.575 6 C 0.096 3.904 7 C 0.590 3.410 8 O -0.546 6.546 9 C 0.023 3.977 10 C -0.231 4.231 11 S 0.231 5.769 12 C 0.016 3.984 13 C 0.155 3.845 14 H 0.104 0.896 15 C -0.147 4.147 16 C -0.154 4.154 17 C 0.046 3.954 18 O -0.367 6.367 19 N -0.419 5.419 20 N -0.720 5.720 21 C -0.228 4.228 22 H 0.068 0.932 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.902 3.098 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.189 0.811 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.382 0.618 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.752 -2.481 -12.138 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.013 4.013 5 N -0.304 5.304 6 C -0.047 4.047 7 C 0.375 3.625 8 O -0.425 6.425 9 C -0.112 4.112 10 C -0.373 4.373 11 S 0.488 5.512 12 C -0.263 4.263 13 C 0.095 3.905 14 H 0.122 0.878 15 C -0.186 4.186 16 C -0.192 4.192 17 C -0.031 4.031 18 O -0.286 6.286 19 N -0.136 5.136 20 N -0.363 5.363 21 C -0.359 4.359 22 H 0.086 0.914 23 C -0.210 4.210 24 N -0.584 5.584 25 Si 0.734 3.266 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.206 0.794 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.217 0.783 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.180 -1.829 -12.470 20.509 hybrid contribution -0.878 0.128 1.393 1.652 sum 15.301 -1.701 -11.077 18.966 Atomic orbital electron populations 1.22367 0.98772 1.00829 1.00262 1.20657 0.91965 0.96357 0.86682 0.92956 1.21907 0.78551 1.01303 0.99520 1.47430 1.06474 1.21196 1.55325 1.22029 0.99508 0.86413 0.96776 1.17025 0.83829 0.83164 0.78519 1.90764 1.73432 1.28165 1.50144 1.20439 0.96462 0.89205 1.05092 1.26690 0.97490 1.06116 1.07047 1.82755 1.05113 1.05970 1.57312 1.26698 0.93889 0.99765 1.05904 1.21215 0.87477 0.94004 0.87853 0.87796 1.23043 0.95361 1.03222 0.97022 1.22958 0.97258 1.01668 0.97328 1.23447 0.91869 0.95585 0.92202 1.89149 1.27601 1.74505 1.37336 1.67251 1.06107 1.25271 1.14933 1.42479 1.78126 1.10477 1.05230 1.19285 1.35562 0.93813 0.87269 0.91398 1.24649 1.02530 0.95978 0.97794 1.69645 1.51647 1.08543 1.28583 0.86179 0.77191 0.78912 0.84349 1.20681 1.21965 1.22081 0.93462 0.92575 0.94290 0.90726 0.90239 0.93627 0.89638 0.90345 0.79372 0.90209 0.88914 0.90310 0.89920 0.88583 0.91653 0.78288 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.49 37.16 0.35 -2.68 16 2 C 0.15 3.26 3.20 -67.93 -0.22 3.05 16 3 H 0.05 1.23 8.08 -51.93 -0.42 0.81 16 4 C 0.11 2.02 4.98 -4.04 -0.02 2.00 16 5 N -0.58 -10.98 2.73 -182.91 -0.50 -11.48 16 6 C 0.10 1.75 8.72 59.84 0.52 2.27 16 7 C 0.59 11.61 7.63 -12.59 -0.10 11.51 16 8 O -0.55 -11.73 16.36 5.25 0.09 -11.65 16 9 C 0.02 0.40 6.42 -84.53 -0.54 -0.15 16 10 C -0.23 -3.30 10.62 29.65 0.31 -2.98 16 11 S 0.23 2.64 22.69 -107.50 -2.44 0.20 16 12 C 0.02 0.22 6.26 -13.61 -0.09 0.13 16 13 C 0.16 1.68 3.82 -27.10 -0.10 1.58 16 14 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.15 -1.35 6.62 -25.16 -0.17 -1.51 16 16 C -0.15 -1.02 7.09 -25.16 -0.18 -1.20 16 17 C 0.05 0.32 7.63 37.94 0.29 0.61 16 18 O -0.37 -3.80 11.12 -35.23 -0.39 -4.20 16 19 N -0.42 -6.64 6.97 -8.51 -0.06 -6.70 16 20 N -0.72 -18.01 4.57 -53.43 -0.24 -18.26 16 21 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 25 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.08 1.39 7.50 -51.93 -0.39 1.00 16 34 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 35 H 0.09 1.67 5.86 -51.93 -0.30 1.37 16 36 H 0.08 1.57 5.77 -51.93 -0.30 1.27 16 37 H 0.19 2.44 8.04 -52.48 -0.42 2.02 16 38 H 0.08 0.77 7.86 -51.93 -0.41 0.36 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.38 9.82 5.40 -40.82 -0.22 9.60 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -33.03 380.37 -8.94 -41.98 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.65 Total: 8.00 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.18 Total: 5.58 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.08 Total: -63.28 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.31 Total: -15.84 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.44 Total: 0.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.03 -8.94 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277818693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.427 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds