Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46812 * 2 1 4 4 C 1.52997 * 109.47388 * 240.00165 * 2 1 3 5 5 N 1.46495 * 109.47172 * 184.99939 * 4 2 1 6 6 C 1.46494 * 120.00071 * 89.99973 * 5 4 2 7 7 C 1.34778 * 120.00104 * 269.99674 * 5 4 2 8 8 O 1.21630 * 119.99851 * 5.39931 * 7 5 4 9 9 C 1.47268 * 120.00158 * 185.40187 * 7 5 4 10 10 C 1.35206 * 123.13888 * 186.42919 * 9 7 5 11 11 S 1.70945 * 108.82433 * 179.97438 * 10 9 7 12 12 C 1.70770 * 91.12913 * 359.97438 * 11 10 9 13 13 C 1.50699 * 124.72110 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.87436 * 164.31948 * 13 12 11 15 15 C 1.54104 * 109.87738 * 285.33206 * 13 12 11 16 16 C 1.54807 * 104.18786 * 121.45295 * 15 13 12 17 17 C 1.54997 * 102.09545 * 20.87976 * 16 15 13 18 18 O 1.43746 * 109.87762 * 43.31659 * 13 12 11 19 19 N 1.28647 * 110.55992 * 359.76229 * 12 11 10 20 20 N 1.46495 * 109.47253 * 119.99581 * 2 1 3 21 21 C 1.36929 * 120.00822 * 275.00519 * 20 2 1 22 22 H 1.08008 * 119.99793 * 359.97438 * 21 20 2 23 23 C 1.38809 * 120.00727 * 179.97438 * 21 20 2 24 24 N 1.31628 * 119.99668 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00379 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46829 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46917 * 120.00242 * 25 23 21 28 28 H 1.48505 * 109.46937 * 240.00020 * 25 23 21 29 29 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46873 * 300.00260 * 1 2 3 31 31 H 1.09002 * 109.46831 * 59.99589 * 1 2 3 32 32 H 1.09006 * 109.47082 * 64.99529 * 4 2 1 33 33 H 1.09004 * 109.47101 * 305.00274 * 4 2 1 34 34 H 1.09006 * 109.47319 * 95.33799 * 6 5 4 35 35 H 1.09000 * 109.47397 * 215.33279 * 6 5 4 36 36 H 1.08994 * 109.47310 * 335.33692 * 6 5 4 37 37 H 1.07993 * 125.59264 * 359.97438 * 10 9 7 38 38 H 1.09005 * 110.48258 * 240.12910 * 15 13 12 39 39 H 1.09001 * 110.48806 * 2.77444 * 15 13 12 40 40 H 1.09000 * 110.90796 * 139.07898 * 16 15 13 41 41 H 1.09000 * 110.90842 * 262.64398 * 16 15 13 42 42 H 1.09001 * 110.61749 * 81.47413 * 17 16 15 43 43 H 1.08997 * 110.61765 * 204.47622 * 17 16 15 44 44 H 0.97005 * 119.99847 * 94.99881 * 20 2 1 45 45 H 0.97001 * 119.99760 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1258 -1.9918 -0.5612 7 6 4.2676 0.1493 -1.7155 8 8 3.7517 1.1617 -2.1496 9 6 5.7308 -0.0105 -1.7637 10 6 6.5692 0.9741 -2.1584 11 16 8.1761 0.3971 -2.0736 12 6 7.6363 -1.1240 -1.5158 13 6 8.5373 -2.2848 -1.1815 14 1 7.9886 -3.0235 -0.5972 15 6 9.0650 -2.9290 -2.4781 16 6 10.6045 -2.8223 -2.3556 17 6 10.7973 -2.6460 -0.8278 18 8 9.6762 -1.8209 -0.4371 19 7 6.3539 -1.1393 -1.4155 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0075 2.3757 22 1 1.8926 1.0406 2.4242 23 6 2.6113 -0.6619 3.5093 24 7 2.9245 -1.9390 3.4501 25 14 2.7903 0.2701 5.1182 26 1 2.3763 1.6825 4.9208 27 1 1.9292 -0.3578 6.1524 28 1 4.2073 0.2263 5.5606 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7198 -1.2952 34 1 4.3688 -2.7305 -1.3250 35 1 5.0383 -1.6832 -0.0511 36 1 3.4361 -2.4290 0.1608 37 1 6.2725 1.9629 -2.4753 38 1 8.7583 -3.9733 -2.5374 39 1 8.7124 -2.3769 -3.3493 40 1 11.0867 -3.7350 -2.7058 41 1 10.9787 -1.9542 -2.8982 42 1 10.7560 -3.6106 -0.3219 43 1 11.7391 -2.1401 -0.6157 44 1 2.2490 -1.6317 1.1527 45 1 3.2478 -2.3963 4.2421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277818694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -4.822520 kcal Electronic energy + Delta-G solvation = -27803.940069 eV Core-core repulsion = 23949.574034 eV Total energy + Delta-G solvation = -3854.366035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59700 -39.67649 -38.38838 -36.23380 -34.09075 -32.60422 -32.01065 -31.61823 -28.86776 -28.80282 -26.99842 -26.14357 -24.80784 -23.68228 -22.92000 -22.07667 -20.75932 -20.03451 -19.31872 -18.04051 -17.20048 -16.86920 -16.47405 -16.08012 -15.53790 -15.47879 -15.29368 -14.63051 -14.32553 -14.12768 -14.00233 -13.72470 -13.25960 -13.21240 -13.12442 -12.36762 -12.19081 -12.14954 -12.03772 -12.00747 -11.93880 -11.64417 -11.57939 -11.32076 -11.20387 -11.15969 -10.81509 -10.63819 -10.32727 -10.23531 -9.98342 -9.78026 -9.65852 -9.60031 -9.36280 -8.89468 -8.86494 -8.02830 -6.87450 -5.71254 -2.97640 0.51030 1.20713 1.63570 2.05710 3.26979 3.46808 3.52934 3.53540 3.55071 3.65521 3.99447 4.16039 4.49753 4.54568 4.65292 4.75490 4.88856 5.06486 5.14779 5.29844 5.31965 5.40142 5.44282 5.52316 5.56776 5.62097 5.65999 5.69568 5.80227 5.91787 6.00201 6.17392 6.22500 6.34905 6.43963 6.45238 6.64812 6.81487 6.92270 6.95898 7.22377 7.45205 7.77617 7.84859 8.48295 8.53405 9.59531 10.16214 10.51938 11.51884 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.003619 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.489559 B = 7735.492103 C = 9060.076184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.111 3.889 5 N -0.575 5.575 6 C 0.095 3.905 7 C 0.590 3.410 8 O -0.547 6.547 9 C 0.023 3.977 10 C -0.231 4.231 11 S 0.225 5.775 12 C 0.014 3.986 13 C 0.156 3.844 14 H 0.105 0.895 15 C -0.146 4.146 16 C -0.156 4.156 17 C 0.045 3.955 18 O -0.365 6.365 19 N -0.419 5.419 20 N -0.720 5.720 21 C -0.229 4.229 22 H 0.068 0.932 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.902 3.098 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.189 0.811 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.382 0.618 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.869 -3.320 -15.987 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.013 4.013 5 N -0.304 5.304 6 C -0.048 4.048 7 C 0.374 3.626 8 O -0.425 6.425 9 C -0.112 4.112 10 C -0.373 4.373 11 S 0.482 5.518 12 C -0.265 4.265 13 C 0.094 3.906 14 H 0.123 0.877 15 C -0.185 4.185 16 C -0.194 4.194 17 C -0.032 4.032 18 O -0.283 6.283 19 N -0.136 5.136 20 N -0.363 5.363 21 C -0.360 4.360 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.584 5.584 25 Si 0.734 3.266 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.206 0.794 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.217 0.783 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.292 -2.579 -15.922 22.926 hybrid contribution -0.897 0.080 1.098 1.420 sum 15.395 -2.499 -14.825 21.518 Atomic orbital electron populations 1.22369 0.98789 1.00809 1.00250 1.20656 0.91963 0.96363 0.86694 0.92974 1.21906 0.78558 1.01286 0.99521 1.47434 1.06470 1.21205 1.55293 1.22042 0.99605 0.86372 0.96760 1.17035 0.83837 0.83155 0.78533 1.90762 1.73442 1.28172 1.50172 1.20452 0.96465 0.89163 1.05131 1.26663 0.97329 1.06040 1.07260 1.82700 1.05279 1.06811 1.56962 1.27011 0.94048 1.00135 1.05330 1.21029 0.86308 0.90115 0.93115 0.87718 1.23038 0.95554 1.02526 0.97369 1.23176 0.95570 1.03426 0.97193 1.23673 0.90250 0.95707 0.93549 1.89020 1.17961 1.57339 1.64021 1.67276 1.06294 1.25394 1.14609 1.42471 1.78127 1.10471 1.05231 1.19273 1.35719 0.93796 0.87243 0.91410 1.24655 1.02465 0.95983 0.97827 1.69647 1.51547 1.08553 1.28611 0.86175 0.77238 0.78882 0.84314 1.20686 1.21977 1.22012 0.93475 0.92566 0.94318 0.90254 0.90735 0.93668 0.89515 0.90335 0.79415 0.89252 0.90010 0.89624 0.90196 0.91426 0.88430 0.78296 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.49 37.16 0.35 -2.70 16 2 C 0.15 3.30 3.20 -67.94 -0.22 3.08 16 3 H 0.05 1.24 8.08 -51.92 -0.42 0.82 16 4 C 0.11 2.03 4.99 -4.05 -0.02 2.01 16 5 N -0.58 -11.04 2.73 -182.91 -0.50 -11.54 16 6 C 0.10 1.76 8.73 59.84 0.52 2.28 16 7 C 0.59 11.65 7.63 -12.59 -0.10 11.55 16 8 O -0.55 -11.77 16.36 5.25 0.09 -11.68 16 9 C 0.02 0.40 6.43 -84.53 -0.54 -0.15 16 10 C -0.23 -3.30 10.62 29.65 0.31 -2.99 16 11 S 0.23 2.56 22.72 -107.50 -2.44 0.12 16 12 C 0.01 0.18 6.10 -13.61 -0.08 0.10 16 13 C 0.16 1.68 3.94 -27.31 -0.11 1.57 16 14 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.15 -1.08 6.63 -25.20 -0.17 -1.25 16 16 C -0.16 -0.88 7.16 -24.72 -0.18 -1.05 16 17 C 0.04 0.31 7.72 38.21 0.29 0.61 16 18 O -0.37 -4.09 11.01 -35.23 -0.39 -4.48 16 19 N -0.42 -6.68 6.95 -8.51 -0.06 -6.74 16 20 N -0.72 -18.26 4.57 -53.43 -0.24 -18.50 16 21 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 22 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 25 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.38 7.50 -51.93 -0.39 0.99 16 33 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.09 1.75 5.83 -51.93 -0.30 1.45 16 36 H 0.08 1.59 5.77 -51.93 -0.30 1.29 16 37 H 0.19 2.45 8.04 -52.49 -0.42 2.03 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.62 7.69 -51.93 -0.40 0.22 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.38 9.95 5.40 -40.82 -0.22 9.73 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -33.96 380.22 -8.93 -42.89 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.64 Total: 7.57 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -0.17 Total: 5.90 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.08 Total: -64.11 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.30 Total: -16.16 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.44 Total: 0.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.96 -8.93 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277818694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.063 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds