Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99995 * 2 1 4 4 C 1.50704 * 109.47089 * 179.97438 * 3 2 1 5 5 N 1.29430 * 124.80239 * 89.97644 * 4 3 2 6 6 C 1.30934 * 117.36077 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19618 * 0.02562 * 6 5 4 8 8 C 1.46683 * 126.13198 * 180.02562 * 7 6 5 9 9 O 1.21690 * 120.00063 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99862 * 179.97438 * 8 7 6 11 11 C 1.47023 * 125.65104 * 359.94937 * 10 8 7 12 12 C 1.54321 * 107.26999 * 181.09726 * 11 10 8 13 13 C 1.55149 * 102.94638 * 22.19716 * 12 11 10 14 14 H 1.09000 * 111.03582 * 82.58419 * 13 12 11 15 15 C 1.52995 * 111.00596 * 206.42377 * 13 12 11 16 16 H 1.08997 * 109.47517 * 56.17809 * 15 13 12 17 17 C 1.52998 * 109.47178 * 176.18188 * 15 13 12 18 18 N 1.46499 * 109.47023 * 296.17921 * 15 13 12 19 19 C 1.36942 * 120.00326 * 154.99980 * 18 15 13 20 20 H 1.08001 * 119.99615 * 0.02562 * 19 18 15 21 21 C 1.38805 * 119.99990 * 179.97438 * 19 18 15 22 22 N 1.31618 * 120.00651 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46947 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47266 * 119.99843 * 23 21 19 26 26 H 1.48496 * 109.47502 * 240.00076 * 23 21 19 27 27 C 1.47428 * 125.64522 * 180.02562 * 10 8 7 28 28 S 1.70953 * 124.80485 * 270.32851 * 4 3 2 29 29 H 1.08997 * 109.47170 * 59.99745 * 1 2 3 30 30 H 1.09006 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47208 * 299.99395 * 1 2 3 32 32 H 1.09008 * 109.47102 * 60.00177 * 3 2 1 33 33 H 1.08994 * 109.47176 * 300.00233 * 3 2 1 34 34 H 1.08005 * 122.89998 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.88297 * 300.51997 * 11 10 8 36 36 H 1.09005 * 109.87908 * 61.52639 * 11 10 8 37 37 H 1.09004 * 110.72038 * 263.83111 * 12 11 10 38 38 H 1.09000 * 110.71546 * 140.56328 * 12 11 10 39 39 H 1.09004 * 109.47526 * 54.91542 * 17 15 13 40 40 H 1.09003 * 109.47133 * 294.91620 * 17 15 13 41 41 H 1.09006 * 109.47369 * 174.91331 * 17 15 13 42 42 H 0.96998 * 120.00044 * 334.99703 * 18 15 13 43 43 H 0.97001 * 120.00435 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36880 * 36.99470 * 27 10 8 45 45 H 1.08999 * 110.45899 * 274.71585 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2494 1.1275 -1.0618 6 6 5.5435 1.0245 -0.8917 7 6 5.9328 0.9934 0.4074 8 6 7.3120 0.8842 0.8947 9 8 8.2331 0.8111 0.1028 10 7 7.5591 0.8648 2.2195 11 6 6.5457 0.9463 3.2815 12 6 7.2930 0.9152 4.6313 13 6 8.7205 1.3880 4.2493 14 1 8.7722 2.4757 4.1997 15 6 9.7607 0.8365 5.2262 16 1 9.6902 -0.2508 5.2566 17 6 11.1611 1.2441 4.7639 18 7 9.5107 1.3795 6.5637 19 6 9.9331 0.6936 7.6712 20 1 10.4508 -0.2475 7.5585 21 6 9.6967 1.2084 8.9384 22 7 9.0661 2.3556 9.0757 23 14 10.2734 0.2732 10.4490 24 1 10.9517 -0.9787 10.0270 25 1 11.2237 1.1149 11.2195 26 1 9.1040 -0.0600 11.3014 27 6 8.8906 0.7599 2.8437 28 16 4.4841 1.1016 1.4047 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8463 -0.8899 34 1 6.2408 0.9684 -1.7146 35 1 5.9859 1.8769 3.1890 36 1 5.8663 0.0967 3.2116 37 1 7.3173 -0.0969 5.0355 38 1 6.8356 1.6042 5.3413 39 1 11.2043 2.3269 4.6468 40 1 11.3820 0.7663 3.8094 41 1 11.8948 0.9294 5.5062 42 1 9.0461 2.2249 6.6648 43 1 8.9006 2.7151 9.9612 44 1 9.6260 1.3187 2.2649 45 1 9.1902 -0.2846 2.9290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279044604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -16.789246 kcal Electronic energy + Delta-G solvation = -26617.118472 eV Core-core repulsion = 22762.233521 eV Total energy + Delta-G solvation = -3854.884951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49170 -39.78618 -38.26450 -37.71249 -35.30855 -32.64351 -31.86690 -30.66065 -29.50630 -28.76744 -27.49808 -26.62982 -24.92388 -24.12170 -23.20297 -21.77879 -21.19303 -19.71882 -19.13544 -18.68962 -17.29009 -17.08367 -16.88338 -16.51532 -16.06483 -15.97666 -15.37916 -15.10481 -14.55090 -14.45681 -14.06878 -13.86248 -13.57395 -13.23129 -13.18519 -12.96138 -12.80380 -12.64750 -12.48834 -12.21635 -11.96688 -11.93368 -11.71056 -11.29339 -10.94059 -10.80419 -10.65288 -10.53588 -10.39667 -10.24917 -10.22102 -10.00437 -9.80398 -9.76893 -9.68001 -9.37588 -8.96318 -8.72440 -7.01100 -5.81380 -3.09927 -0.12581 0.84360 1.27790 2.10762 2.76217 2.96082 3.25139 3.39927 3.46472 3.48031 3.88629 4.27389 4.41834 4.53762 4.64456 4.77521 4.80308 4.85045 4.88105 4.93134 4.97107 5.03394 5.17848 5.21780 5.34933 5.48661 5.57770 5.75497 5.81134 5.82118 5.89132 5.97396 6.09955 6.15029 6.29406 6.38071 6.50282 6.50998 6.59445 6.82280 7.05620 7.23590 7.34696 7.67043 7.89960 8.37100 9.48868 10.05243 10.40233 11.41231 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002388 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.299660 B =11720.550230 C =13124.473667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.025 3.975 5 N -0.462 5.462 6 C 0.115 3.885 7 C -0.283 4.283 8 C 0.607 3.393 9 O -0.529 6.529 10 N -0.609 5.609 11 C 0.083 3.917 12 C -0.109 4.109 13 C -0.102 4.102 14 H 0.083 0.917 15 C 0.185 3.815 16 H 0.050 0.950 17 C -0.169 4.169 18 N -0.722 5.722 19 C -0.235 4.235 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.116 3.884 28 S 0.222 5.778 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.190 0.810 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.038 0.962 41 H 0.056 0.944 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.081 0.919 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 -1.445 -17.799 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.249 4.249 5 N -0.178 5.178 6 C -0.044 4.044 7 C -0.408 4.408 8 C 0.394 3.606 9 O -0.407 6.407 10 N -0.342 5.342 11 C -0.041 4.041 12 C -0.147 4.147 13 C -0.122 4.122 14 H 0.101 0.899 15 C 0.075 3.925 16 H 0.068 0.932 17 C -0.229 4.229 18 N -0.363 5.363 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.006 4.006 28 S 0.479 5.521 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.207 0.793 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.748 -1.752 -17.571 23.660 hybrid contribution 0.488 0.048 0.197 0.529 sum -15.259 -1.704 -17.374 23.186 Atomic orbital electron populations 1.22828 0.79785 1.03461 1.00435 1.87965 1.20481 1.26126 1.95543 1.20821 0.84457 0.86223 1.02702 1.27206 1.00900 1.03391 0.93355 1.66198 1.04784 1.15095 1.31710 1.22149 0.90695 0.96045 0.95490 1.25882 0.98189 1.18633 0.98052 1.16283 0.85989 0.77209 0.81094 1.90848 1.44362 1.51183 1.54353 1.48397 1.09899 1.71631 1.04268 1.22362 0.91532 1.01490 0.88732 1.22548 0.94803 1.03866 0.93522 1.22704 0.95724 1.00750 0.93069 0.89865 1.20127 0.90603 0.96538 0.85222 0.93160 1.22500 1.00175 1.00776 0.99418 1.42371 1.69284 1.25533 0.99130 1.19256 1.29995 1.02528 0.84884 0.91145 1.24715 1.01376 0.97378 0.97444 1.69660 1.46748 1.19637 1.22071 0.86157 0.77861 0.78908 0.83500 1.20583 1.21948 1.21914 1.22379 0.83322 1.01555 0.93354 1.84319 0.95540 1.63163 1.09035 0.93544 0.89014 0.93519 0.90576 0.89913 0.79336 0.91007 0.90975 0.89786 0.89011 0.93534 0.94335 0.92479 0.78292 0.93591 0.90033 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.43 10.69 -35.23 -0.38 -3.80 16 3 C 0.14 1.05 6.51 36.01 0.23 1.28 16 4 C 0.03 0.26 7.02 -13.29 -0.09 0.17 16 5 N -0.46 -5.56 10.51 -11.50 -0.12 -5.68 16 6 C 0.11 1.38 11.09 -18.86 -0.21 1.17 16 7 C -0.28 -3.51 6.40 -37.10 -0.24 -3.74 16 8 C 0.61 8.82 7.82 -12.85 -0.10 8.72 16 9 O -0.53 -9.15 17.12 5.20 0.09 -9.06 16 10 N -0.61 -8.20 3.33 -172.07 -0.57 -8.77 16 11 C 0.08 0.96 5.19 -3.07 -0.02 0.94 16 12 C -0.11 -1.48 6.19 -24.90 -0.15 -1.63 16 13 C -0.10 -1.51 2.63 -88.49 -0.23 -1.74 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.19 3.33 2.40 -67.93 -0.16 3.17 16 16 H 0.05 0.92 8.08 -51.93 -0.42 0.51 16 17 C -0.17 -2.87 9.23 37.16 0.34 -2.53 16 18 N -0.72 -16.57 4.88 -53.43 -0.26 -16.83 16 19 C -0.24 -6.16 9.93 -15.06 -0.15 -6.30 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 23 Si 0.90 21.69 29.55 -169.99 -5.02 16.67 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.12 1.60 5.52 -2.54 -0.01 1.58 16 28 S 0.22 2.16 18.64 -107.50 -2.00 0.15 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 35 H 0.07 0.75 6.88 -51.93 -0.36 0.39 16 36 H 0.07 0.75 7.00 -51.93 -0.36 0.39 16 37 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.56 7.60 -51.93 -0.39 0.16 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.38 9.39 7.80 -40.82 -0.32 9.07 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 45 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -32.21 384.47 -8.40 -40.62 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.88 Total: 5.25 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 0.22 Total: 1.89 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.23 Total: -57.51 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.29 Total: -12.86 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.00 Total: 0.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.21 -8.40 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.827 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds