Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99732 * 2 1 4 4 C 1.50700 * 109.46815 * 180.02562 * 3 2 1 5 5 N 1.29431 * 124.80624 * 90.02386 * 4 3 2 6 6 C 1.30934 * 117.36147 * 179.97438 * 5 4 3 7 7 C 1.35667 * 114.19745 * 0.02562 * 6 5 4 8 8 C 1.46682 * 126.13196 * 180.02562 * 7 6 5 9 9 O 1.21676 * 120.00044 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99619 * 179.97438 * 8 7 6 11 11 C 1.47024 * 125.64847 * 359.68617 * 10 8 7 12 12 C 1.54327 * 107.26774 * 179.20685 * 11 10 8 13 13 C 1.55155 * 102.94571 * 337.80617 * 12 11 10 14 14 H 1.09005 * 111.03913 * 277.41873 * 13 12 11 15 15 C 1.52996 * 111.00532 * 153.57522 * 13 12 11 16 16 H 1.09002 * 109.46921 * 306.34992 * 15 13 12 17 17 C 1.52996 * 109.47033 * 66.35224 * 15 13 12 18 18 N 1.46499 * 109.47244 * 186.35294 * 15 13 12 19 19 C 1.36934 * 120.00239 * 154.99883 * 18 15 13 20 20 H 1.07999 * 119.99944 * 0.02562 * 19 18 15 21 21 C 1.38812 * 120.00124 * 179.97438 * 19 18 15 22 22 N 1.31625 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99900 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47433 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47059 * 120.00232 * 23 21 19 26 26 H 1.48505 * 109.46955 * 239.99489 * 23 21 19 27 27 C 1.47426 * 125.64645 * 179.97438 * 10 8 7 28 28 S 1.70956 * 124.80228 * 270.33825 * 4 3 2 29 29 H 1.09007 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47529 * 300.00006 * 1 2 3 31 31 H 1.09005 * 109.47192 * 59.99957 * 1 2 3 32 32 H 1.08996 * 109.47119 * 59.99770 * 3 2 1 33 33 H 1.09002 * 109.46788 * 299.99620 * 3 2 1 34 34 H 1.08006 * 122.90500 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.88316 * 298.62177 * 11 10 8 36 36 H 1.09002 * 109.88101 * 59.79072 * 11 10 8 37 37 H 1.08999 * 110.71564 * 219.44370 * 12 11 10 38 38 H 1.09000 * 110.86856 * 96.24526 * 12 11 10 39 39 H 1.09001 * 109.47057 * 299.99866 * 17 15 13 40 40 H 1.09002 * 109.47456 * 60.00095 * 17 15 13 41 41 H 1.09001 * 109.47441 * 179.97438 * 17 15 13 42 42 H 0.97005 * 120.00119 * 335.00038 * 18 15 13 43 43 H 0.97002 * 119.99650 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36518 * 322.69812 * 27 10 8 45 45 H 1.08995 * 110.36673 * 84.90922 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2486 1.1288 -1.0637 6 6 5.5429 1.0267 -0.8946 7 6 5.9332 0.9950 0.4043 8 6 7.3129 0.8864 0.8905 9 8 8.2333 0.8146 0.0979 10 7 7.5610 0.8664 2.2151 11 6 6.5486 0.9519 3.2778 12 6 7.2930 0.8697 4.6272 13 6 8.6266 0.1741 4.2468 14 1 8.5046 -0.9082 4.2020 15 6 9.7425 0.5574 5.2207 16 1 9.8158 1.6433 5.2800 17 6 9.4267 -0.0089 6.6065 18 7 11.0148 0.0073 4.7467 19 6 12.1949 0.5979 5.1125 20 1 12.1876 1.4690 5.7509 21 6 13.4004 0.0763 4.6638 22 7 13.4094 -0.9863 3.8870 23 14 15.0102 0.8815 5.1634 24 1 14.7293 2.0512 6.0342 25 1 15.8449 -0.0984 5.9039 26 1 15.7362 1.3321 3.9488 27 6 8.8929 0.7610 2.8383 28 16 4.4851 1.1010 1.4027 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 6.2397 0.9716 -1.7180 35 1 6.0149 1.8995 3.2060 36 1 5.8478 0.1217 3.1899 37 1 6.7325 0.2653 5.3405 38 1 7.4785 1.8656 5.0296 39 1 8.4800 0.4004 6.9592 40 1 9.3534 -1.0949 6.5472 41 1 10.2219 0.2638 7.3004 42 1 11.0214 -0.7754 4.1736 43 1 14.2518 -1.3506 3.5732 44 1 9.5294 0.0897 2.2617 45 1 9.3539 1.7455 2.9168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279044605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -15.517395 kcal Electronic energy + Delta-G solvation = -26693.379061 eV Core-core repulsion = 22838.549261 eV Total energy + Delta-G solvation = -3854.829799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.42898 -39.73905 -38.27106 -37.66361 -35.26713 -32.63170 -31.86532 -30.64298 -29.25657 -28.54968 -27.99543 -26.62965 -24.63197 -23.97638 -23.44325 -21.82036 -21.08951 -19.71203 -19.10606 -18.63324 -17.24521 -17.09727 -16.82993 -16.42724 -16.02915 -15.93597 -15.32929 -15.00274 -14.64510 -14.42760 -14.08696 -13.82588 -13.72863 -13.26186 -13.12036 -12.90566 -12.75798 -12.70747 -12.28522 -12.11681 -11.98239 -11.95411 -11.63232 -11.37825 -10.92174 -10.83821 -10.65793 -10.60459 -10.38056 -10.22972 -10.15089 -9.97711 -9.79394 -9.74911 -9.62701 -9.33372 -8.92330 -8.61220 -6.96977 -5.75816 -3.05215 -0.09223 0.85587 1.28534 2.15794 2.86128 3.05189 3.26150 3.44151 3.49395 3.52075 3.89135 4.32155 4.40771 4.54217 4.57789 4.76887 4.80735 4.83021 4.85654 4.90139 4.92243 5.06093 5.19589 5.20907 5.33128 5.53083 5.59037 5.79704 5.81993 5.84011 5.87322 5.97022 6.12434 6.22102 6.30407 6.35046 6.48925 6.51062 6.59318 6.81747 7.04335 7.29039 7.44155 7.70759 8.03383 8.41953 9.53523 10.09733 10.43976 11.46617 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.002297 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.783197 B =12187.099882 C =13016.220701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.025 3.975 5 N -0.460 5.460 6 C 0.113 3.887 7 C -0.276 4.276 8 C 0.604 3.396 9 O -0.519 6.519 10 N -0.612 5.612 11 C 0.086 3.914 12 C -0.118 4.118 13 C -0.102 4.102 14 H 0.083 0.917 15 C 0.185 3.815 16 H 0.050 0.950 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.122 3.878 28 S 0.211 5.789 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.191 0.809 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.088 0.912 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.495 5.298 -2.853 29.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.249 4.249 5 N -0.176 5.176 6 C -0.045 4.045 7 C -0.401 4.401 8 C 0.390 3.610 9 O -0.397 6.397 10 N -0.345 5.345 11 C -0.038 4.038 12 C -0.157 4.157 13 C -0.122 4.122 14 H 0.101 0.899 15 C 0.075 3.925 16 H 0.068 0.932 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.001 3.999 28 S 0.468 5.532 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.208 0.792 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.300 5.239 -2.716 28.909 hybrid contribution 1.272 0.228 -0.685 1.463 sum -27.028 5.466 -3.401 27.784 Atomic orbital electron populations 1.22824 0.79841 1.03454 1.00388 1.87975 1.20431 1.26156 1.95531 1.20810 0.84505 0.86185 1.02614 1.27167 1.00812 1.03708 0.93243 1.66191 1.04846 1.14916 1.31639 1.22180 0.90627 0.96044 0.95628 1.25942 0.98140 1.18045 0.97950 1.16285 0.85888 0.77575 0.81246 1.90890 1.44283 1.50351 1.54139 1.48442 1.10065 1.71877 1.04127 1.22224 0.91639 1.01372 0.88570 1.22646 0.96244 1.02341 0.94446 1.22703 0.94824 1.00296 0.94407 0.89883 1.20152 0.85219 0.96721 0.90440 0.93222 1.22443 0.99457 1.00834 0.99687 1.42426 0.99791 1.34859 1.59508 1.19232 0.84187 1.08765 1.24797 0.91150 1.24743 0.97678 0.98143 1.00313 1.69669 1.25419 1.24151 1.38588 0.86154 0.84251 0.78366 0.77611 1.20603 1.21953 1.21889 1.22333 0.82264 1.02340 0.92947 1.84113 0.95818 1.63765 1.09501 0.89017 0.93589 0.93544 0.90670 0.89932 0.79229 0.91076 0.91054 0.89671 0.89945 0.94386 0.93473 0.92701 0.78233 0.93538 0.89352 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.34 10.69 -35.23 -0.38 -3.72 16 3 C 0.14 1.02 6.51 36.01 0.23 1.25 16 4 C 0.02 0.25 7.02 -13.29 -0.09 0.16 16 5 N -0.46 -5.71 10.51 -11.50 -0.12 -5.83 16 6 C 0.11 1.45 11.09 -18.85 -0.21 1.24 16 7 C -0.28 -3.61 6.40 -37.09 -0.24 -3.85 16 8 C 0.60 9.68 7.82 -12.85 -0.10 9.58 16 9 O -0.52 -10.30 17.13 5.21 0.09 -10.21 16 10 N -0.61 -8.93 3.33 -172.07 -0.57 -9.50 16 11 C 0.09 0.92 5.19 -3.06 -0.02 0.90 16 12 C -0.12 -1.26 5.59 -24.90 -0.14 -1.40 16 13 C -0.10 -1.52 2.62 -88.48 -0.23 -1.75 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C 0.19 3.33 2.41 -67.93 -0.16 3.17 16 16 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 17 C -0.16 -2.67 9.34 37.16 0.35 -2.33 16 18 N -0.72 -17.23 4.82 -53.43 -0.26 -17.49 16 19 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 23 Si 0.90 22.35 29.55 -169.99 -5.02 17.33 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 27 C 0.12 2.05 6.08 -2.54 -0.02 2.03 16 28 S 0.21 1.99 18.65 -107.50 -2.00 -0.01 16 29 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.19 2.28 8.06 -52.48 -0.42 1.86 16 35 H 0.07 0.64 7.04 -51.93 -0.37 0.27 16 36 H 0.07 0.68 6.85 -51.93 -0.36 0.32 16 37 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 38 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 39 H 0.04 0.49 7.50 -51.93 -0.39 0.10 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.09 1.75 8.04 -51.93 -0.42 1.33 16 45 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -33.99 384.35 -8.38 -42.37 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.87 Total: 5.32 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 0.24 Total: 3.25 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.23 Total: -60.11 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.29 Total: -13.93 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.00 Total: -0.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.99 -8.38 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.848 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds