Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99732 * 2 1 4 4 C 1.50700 * 109.46815 * 180.02562 * 3 2 1 5 5 N 1.29431 * 124.80624 * 90.02386 * 4 3 2 6 6 C 1.30934 * 117.36147 * 179.97438 * 5 4 3 7 7 C 1.35667 * 114.19745 * 0.02562 * 6 5 4 8 8 C 1.46682 * 126.13196 * 180.02562 * 7 6 5 9 9 O 1.21676 * 120.00044 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99619 * 179.97438 * 8 7 6 11 11 C 1.47024 * 125.64847 * 359.68617 * 10 8 7 12 12 C 1.54327 * 107.26774 * 179.20685 * 11 10 8 13 13 C 1.55155 * 102.94571 * 337.80617 * 12 11 10 14 14 H 1.09005 * 111.03913 * 277.41873 * 13 12 11 15 15 C 1.52996 * 111.00532 * 153.57522 * 13 12 11 16 16 H 1.09002 * 109.46921 * 306.34992 * 15 13 12 17 17 C 1.52996 * 109.47033 * 66.35224 * 15 13 12 18 18 N 1.46499 * 109.47244 * 186.35294 * 15 13 12 19 19 C 1.36934 * 120.00239 * 154.99883 * 18 15 13 20 20 H 1.07999 * 119.99944 * 0.02562 * 19 18 15 21 21 C 1.38812 * 120.00124 * 179.97438 * 19 18 15 22 22 N 1.31625 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99900 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47433 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47059 * 120.00232 * 23 21 19 26 26 H 1.48505 * 109.46955 * 239.99489 * 23 21 19 27 27 C 1.47426 * 125.64645 * 179.97438 * 10 8 7 28 28 S 1.70956 * 124.80228 * 270.33825 * 4 3 2 29 29 H 1.09007 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47529 * 300.00006 * 1 2 3 31 31 H 1.09005 * 109.47192 * 59.99957 * 1 2 3 32 32 H 1.08996 * 109.47119 * 59.99770 * 3 2 1 33 33 H 1.09002 * 109.46788 * 299.99620 * 3 2 1 34 34 H 1.08006 * 122.90500 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.88316 * 298.62177 * 11 10 8 36 36 H 1.09002 * 109.88101 * 59.79072 * 11 10 8 37 37 H 1.08999 * 110.71564 * 219.44370 * 12 11 10 38 38 H 1.09000 * 110.86856 * 96.24526 * 12 11 10 39 39 H 1.09001 * 109.47057 * 299.99866 * 17 15 13 40 40 H 1.09002 * 109.47456 * 60.00095 * 17 15 13 41 41 H 1.09001 * 109.47441 * 179.97438 * 17 15 13 42 42 H 0.97005 * 120.00119 * 335.00038 * 18 15 13 43 43 H 0.97002 * 119.99650 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36518 * 322.69812 * 27 10 8 45 45 H 1.08995 * 110.36673 * 84.90922 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2486 1.1288 -1.0637 6 6 5.5429 1.0267 -0.8946 7 6 5.9332 0.9950 0.4043 8 6 7.3129 0.8864 0.8905 9 8 8.2333 0.8146 0.0979 10 7 7.5610 0.8664 2.2151 11 6 6.5486 0.9519 3.2778 12 6 7.2930 0.8697 4.6272 13 6 8.6266 0.1741 4.2468 14 1 8.5046 -0.9082 4.2020 15 6 9.7425 0.5574 5.2207 16 1 9.8158 1.6433 5.2800 17 6 9.4267 -0.0089 6.6065 18 7 11.0148 0.0073 4.7467 19 6 12.1949 0.5979 5.1125 20 1 12.1876 1.4690 5.7509 21 6 13.4004 0.0763 4.6638 22 7 13.4094 -0.9863 3.8870 23 14 15.0102 0.8815 5.1634 24 1 14.7293 2.0512 6.0342 25 1 15.8449 -0.0984 5.9039 26 1 15.7362 1.3321 3.9488 27 6 8.8929 0.7610 2.8383 28 16 4.4851 1.1010 1.4027 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 6.2397 0.9716 -1.7180 35 1 6.0149 1.8995 3.2060 36 1 5.8478 0.1217 3.1899 37 1 6.7325 0.2653 5.3405 38 1 7.4785 1.8656 5.0296 39 1 8.4800 0.4004 6.9592 40 1 9.3534 -1.0949 6.5472 41 1 10.2219 0.2638 7.3004 42 1 11.0214 -0.7754 4.1736 43 1 14.2518 -1.3506 3.5732 44 1 9.5294 0.0897 2.2617 45 1 9.3539 1.7455 2.9168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279044605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = -40.404425 kcal Electronic energy + Delta-G solvation = -26694.458243 eV Core-core repulsion = 22838.549261 eV Total energy + Delta-G solvation = -3855.908982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50789 -40.73678 -39.10214 -38.67543 -36.84565 -34.36175 -32.85371 -32.00635 -30.23246 -30.05355 -29.08256 -27.13236 -25.95846 -25.43981 -24.44851 -23.03845 -22.23075 -21.09714 -20.01676 -19.69720 -19.03779 -17.94846 -17.65908 -17.47197 -17.11547 -16.64584 -16.54985 -16.13102 -15.83689 -15.51999 -15.42605 -15.21055 -15.00523 -14.61408 -14.22704 -14.03765 -13.70215 -13.64830 -13.43074 -13.26318 -13.10546 -13.06879 -12.82078 -12.57874 -12.37044 -12.36150 -12.15481 -12.05128 -11.79498 -11.53990 -11.44898 -11.38335 -10.95279 -10.83178 -10.69253 -10.62550 -10.24860 -9.74988 -8.97329 -7.91530 -5.18756 -0.99190 0.01386 0.42335 1.19236 1.46498 1.47635 1.56878 1.70819 1.94761 2.57249 2.63604 3.20400 3.33153 3.43206 3.54624 3.68211 3.80811 3.84800 4.08600 4.15898 4.18910 4.24193 4.33028 4.37502 4.51639 4.55086 4.59334 4.61771 4.64709 4.82876 4.87354 4.88839 4.92301 4.92942 5.05424 5.12314 5.18496 5.30460 5.42659 5.55886 5.68179 6.06246 6.24143 6.30987 6.47282 6.81894 7.36736 8.15164 8.35204 9.32317 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.002297 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.783197 B =12187.099882 C =13016.220701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.134 3.866 4 C 0.023 3.977 5 N -0.487 5.487 6 C 0.112 3.888 7 C -0.311 4.311 8 C 0.598 3.402 9 O -0.576 6.576 10 N -0.611 5.611 11 C 0.079 3.921 12 C -0.105 4.105 13 C -0.093 4.093 14 H 0.079 0.921 15 C 0.179 3.821 16 H 0.050 0.950 17 C -0.153 4.153 18 N -0.739 5.739 19 C -0.227 4.227 20 H 0.079 0.921 21 C -0.082 4.082 22 N -0.972 5.972 23 Si 0.967 3.033 24 H -0.262 1.262 25 H -0.296 1.296 26 H -0.300 1.300 27 C 0.126 3.874 28 S 0.293 5.707 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.183 0.817 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.033 0.967 42 H 0.369 0.631 43 H 0.247 0.753 44 H 0.042 0.958 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.450 6.717 -0.343 33.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.055 3.945 4 C -0.251 4.251 5 N -0.203 5.203 6 C -0.048 4.048 7 C -0.436 4.436 8 C 0.387 3.613 9 O -0.458 6.458 10 N -0.343 5.343 11 C -0.043 4.043 12 C -0.143 4.143 13 C -0.113 4.113 14 H 0.097 0.903 15 C 0.071 3.929 16 H 0.068 0.932 17 C -0.213 4.213 18 N -0.378 5.378 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.274 4.274 22 N -0.623 5.623 23 Si 0.797 3.203 24 H -0.187 1.187 25 H -0.224 1.224 26 H -0.228 1.228 27 C 0.004 3.996 28 S 0.551 5.449 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.200 0.800 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.201 0.799 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -32.349 6.700 -0.122 33.036 hybrid contribution 2.306 -0.179 -1.447 2.728 sum -30.043 6.521 -1.568 30.783 Atomic orbital electron populations 1.23025 0.77934 1.04279 1.01788 1.87921 1.22542 1.26852 1.95837 1.21081 0.82399 0.86270 1.04779 1.27872 1.02435 1.01407 0.93361 1.66266 1.04513 1.16586 1.32912 1.22194 0.91147 0.95679 0.95743 1.25668 0.98223 1.20470 0.99190 1.16730 0.86728 0.76615 0.81239 1.90845 1.46365 1.52954 1.55598 1.48482 1.10119 1.71062 1.04589 1.22570 0.91062 1.03592 0.87123 1.22704 0.93324 1.03213 0.95044 1.22524 0.96303 1.00356 0.92135 0.90306 1.20439 0.83775 0.96525 0.92203 0.93174 1.22276 1.01066 1.00520 0.97421 1.42683 1.01303 1.34434 1.59429 1.19640 0.85310 1.08054 1.22888 0.90334 1.25524 1.01010 0.99309 1.01544 1.69833 1.25458 1.26177 1.40875 0.85156 0.80361 0.77851 0.76946 1.18665 1.22352 1.22826 1.22072 0.83128 1.00464 0.93983 1.83583 0.92245 1.61911 1.07157 0.88597 0.91591 0.92719 0.87170 0.89127 0.79999 0.88416 0.89130 0.86139 0.88411 0.89736 0.94065 0.94760 0.79918 0.94397 0.93892 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -6.05 10.69 -148.98 -1.59 -7.65 16 3 C 0.13 1.53 6.51 71.24 0.46 2.00 16 4 C 0.02 0.41 7.02 88.46 0.62 1.03 16 5 N -0.49 -11.70 10.51 -190.29 -2.00 -13.70 16 6 C 0.11 2.93 11.09 84.23 0.93 3.86 16 7 C -0.31 -8.02 6.40 23.88 0.15 -7.87 16 8 C 0.60 19.87 7.82 86.45 0.68 20.54 16 9 O -0.58 -24.72 17.13 -4.27 -0.07 -24.79 16 10 N -0.61 -17.68 3.33 -816.52 -2.72 -20.39 16 11 C 0.08 1.40 5.19 86.73 0.45 1.85 16 12 C -0.10 -1.77 5.59 31.78 0.18 -1.59 16 13 C -0.09 -2.65 2.62 -9.41 -0.02 -2.67 16 14 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 15 C 0.18 6.24 2.41 44.99 0.11 6.35 16 16 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 17 C -0.15 -4.59 9.34 71.98 0.67 -3.92 16 18 N -0.74 -35.89 4.82 -322.95 -1.56 -37.44 16 19 C -0.23 -12.36 9.93 84.03 0.83 -11.52 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 22 N -0.97 -60.96 13.06 21.65 0.28 -60.67 16 23 Si 0.97 46.96 29.55 68.60 2.03 48.98 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 26 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 27 C 0.13 4.38 6.08 86.85 0.53 4.90 16 28 S 0.29 4.58 18.65 -56.49 -1.05 3.53 16 29 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.18 4.79 8.06 -2.91 -0.02 4.76 16 35 H 0.10 1.28 7.04 -2.39 -0.02 1.26 16 36 H 0.09 1.31 6.85 -2.39 -0.02 1.29 16 37 H 0.12 1.31 8.13 -2.39 -0.02 1.29 16 38 H 0.10 1.44 8.01 -2.39 -0.02 1.42 16 39 H 0.08 1.76 7.50 -2.39 -0.02 1.74 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.37 19.90 7.80 -92.70 -0.72 19.18 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 45 H 0.06 2.27 8.04 -2.39 -0.02 2.25 16 Total: -1.00 -79.74 384.35 0.91 -78.83 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.28 Total: 23.23 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.31 Total: 10.08 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -5.99 Total: -132.21 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -1.67 Total: -32.44 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.05 Total: 3.53 kcal Total: -79.74 0.91 -78.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.428 kcal (2) G-P(sol) polarization free energy of solvation -79.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds