Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00145 * 2 1 4 4 C 1.50707 * 109.47017 * 180.02562 * 3 2 1 5 5 N 1.29421 * 124.80271 * 90.02351 * 4 3 2 6 6 C 1.30947 * 117.36399 * 180.02562 * 5 4 3 7 7 C 1.35671 * 114.18877 * 0.02562 * 6 5 4 8 8 C 1.46681 * 126.12762 * 180.02562 * 7 6 5 9 9 O 1.21683 * 120.00334 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99509 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.65119 * 359.96760 * 10 8 7 12 12 C 1.54328 * 107.27104 * 178.97689 * 11 10 8 13 13 C 1.55158 * 102.94184 * 337.81139 * 12 11 10 14 14 H 1.09002 * 111.00437 * 277.38881 * 13 12 11 15 15 C 1.53001 * 111.00472 * 153.57476 * 13 12 11 16 16 H 1.08999 * 109.46935 * 63.17849 * 15 13 12 17 17 C 1.52999 * 109.46944 * 303.18111 * 15 13 12 18 18 N 1.46499 * 109.47193 * 183.17908 * 15 13 12 19 19 C 1.36939 * 119.99933 * 205.27576 * 18 15 13 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 15 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 15 22 22 N 1.31612 * 120.00054 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47517 * 89.99708 * 23 21 19 25 25 H 1.48502 * 109.46736 * 209.99481 * 23 21 19 26 26 H 1.48496 * 109.47375 * 329.99177 * 23 21 19 27 27 C 1.47468 * 125.62622 * 179.97438 * 10 8 7 28 28 S 1.70953 * 124.80214 * 270.34298 * 4 3 2 29 29 H 1.09008 * 109.46767 * 299.99720 * 1 2 3 30 30 H 1.08999 * 109.47493 * 59.99139 * 1 2 3 31 31 H 1.08999 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46887 * 60.00462 * 3 2 1 33 33 H 1.08993 * 109.47406 * 300.00144 * 3 2 1 34 34 H 1.08001 * 122.90395 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.88065 * 59.56552 * 11 10 8 36 36 H 1.08994 * 109.88507 * 298.39748 * 11 10 8 37 37 H 1.09001 * 110.71893 * 219.44654 * 12 11 10 38 38 H 1.08993 * 110.86952 * 96.24456 * 12 11 10 39 39 H 1.08999 * 109.47091 * 299.99643 * 17 15 13 40 40 H 1.08996 * 109.47098 * 60.00014 * 17 15 13 41 41 H 1.09001 * 109.46823 * 179.97438 * 17 15 13 42 42 H 0.97001 * 119.99790 * 24.99549 * 18 15 13 43 43 H 0.96998 * 120.00381 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.35255 * 85.24786 * 27 10 8 45 45 H 1.09002 * 110.40265 * 322.90886 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2486 1.1286 -1.0637 6 6 5.5430 1.0254 -0.8947 7 6 5.9331 0.9927 0.4043 8 6 7.3127 0.8829 0.8904 9 8 8.2332 0.8107 0.0978 10 7 7.5606 0.8609 2.2150 11 6 6.5478 0.9396 3.2778 12 6 7.2917 0.8518 4.6271 13 6 8.6266 0.1601 4.2435 14 1 8.5057 -0.9221 4.1939 15 6 9.7416 0.5402 5.2199 16 1 9.4896 0.1798 6.2172 17 6 9.8950 2.0621 5.2512 18 7 11.0008 -0.0688 4.7842 19 6 11.9895 -0.3242 5.6966 20 1 11.8427 -0.0726 6.7366 21 6 13.1804 -0.9065 5.2848 22 7 14.1308 -1.1515 6.1616 23 14 13.4344 -1.3411 3.4860 24 1 14.0432 -0.1860 2.7787 25 1 14.3370 -2.5159 3.3833 26 1 12.1252 -1.6672 2.8658 27 6 8.8930 0.7540 2.8379 28 16 4.4851 1.1006 1.4027 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 6.2396 0.9702 -1.7181 35 1 5.8483 0.1088 3.1854 36 1 6.0127 1.8868 3.2105 37 1 6.7320 0.2430 5.3371 38 1 7.4757 1.8458 5.0345 39 1 10.1470 2.4225 4.2538 40 1 8.9582 2.5152 5.5753 41 1 10.6891 2.3329 5.9471 42 1 11.1326 -0.2948 3.8502 43 1 14.9631 -1.5581 5.8739 44 1 9.3518 1.7390 2.9230 45 1 9.5308 0.0863 2.2586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279044606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = -5.943662 kcal Electronic energy + Delta-G solvation = -26864.650981 eV Core-core repulsion = 23010.236330 eV Total energy + Delta-G solvation = -3854.414651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56953 -39.90788 -38.36399 -37.88225 -35.42520 -32.72166 -31.92085 -30.89929 -29.37856 -29.04125 -27.84634 -26.68656 -24.96509 -24.13043 -23.56180 -21.75830 -21.55994 -19.20817 -19.11574 -18.82689 -17.65655 -17.15802 -17.03051 -16.55159 -16.17029 -16.02879 -15.42455 -15.05133 -14.85097 -14.51929 -14.21427 -14.05193 -13.94742 -13.33644 -13.14681 -13.04774 -12.85603 -12.78083 -12.49033 -12.41943 -12.14139 -12.01322 -11.80332 -11.38674 -11.11680 -10.94242 -10.62032 -10.52101 -10.44974 -10.39561 -10.25936 -10.04251 -9.86882 -9.83696 -9.59280 -9.42204 -8.95789 -8.72525 -7.30558 -5.78161 -3.14328 -0.18332 0.77062 1.20001 2.06218 2.70759 2.92754 3.19094 3.39608 3.43501 3.48116 3.82284 4.19443 4.34737 4.42347 4.59039 4.63248 4.71838 4.75664 4.79262 4.81465 4.87201 4.96434 5.09521 5.16012 5.19461 5.37453 5.50203 5.54306 5.57938 5.71301 5.74949 5.78502 5.97175 5.98472 6.07558 6.21145 6.37584 6.43996 6.47072 6.68970 6.97151 7.18522 7.29994 7.87809 7.96901 8.40544 9.18571 9.91453 10.10068 11.39883 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.002435 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.183796 B =11494.743099 C =12122.118142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.027 3.973 5 N -0.461 5.461 6 C 0.115 3.885 7 C -0.280 4.280 8 C 0.605 3.395 9 O -0.523 6.523 10 N -0.610 5.610 11 C 0.087 3.913 12 C -0.124 4.124 13 C -0.107 4.107 14 H 0.088 0.912 15 C 0.190 3.810 16 H 0.063 0.937 17 C -0.173 4.173 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.107 3.893 28 S 0.213 5.787 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.191 0.809 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.085 0.915 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.091 7.361 -8.719 32.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.247 4.247 5 N -0.176 5.176 6 C -0.043 4.043 7 C -0.404 4.404 8 C 0.392 3.608 9 O -0.401 6.401 10 N -0.343 5.343 11 C -0.038 4.038 12 C -0.162 4.162 13 C -0.127 4.127 14 H 0.106 0.894 15 C 0.080 3.920 16 H 0.081 0.919 17 C -0.233 4.233 18 N -0.392 5.392 19 C -0.374 4.374 20 H 0.109 0.891 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.711 3.289 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.014 4.014 28 S 0.471 5.529 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.207 0.793 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -29.899 7.154 -8.418 31.875 hybrid contribution 0.674 -0.220 -2.098 2.214 sum -29.225 6.933 -10.516 31.824 Atomic orbital electron populations 1.22828 0.79768 1.03493 1.00419 1.87971 1.20492 1.26100 1.95537 1.20818 0.84437 0.86243 1.02676 1.27190 1.00872 1.03431 0.93203 1.66198 1.04817 1.14976 1.31636 1.22182 0.90658 0.95867 0.95579 1.25888 0.98083 1.18445 0.98007 1.16299 0.85985 0.77377 0.81149 1.90877 1.44378 1.50607 1.54192 1.48395 1.09774 1.71949 1.04211 1.22237 0.91550 1.01560 0.88417 1.22783 0.95880 1.02947 0.94605 1.22785 0.95206 1.00545 0.94160 0.89409 1.20045 0.84629 0.91729 0.95556 0.91926 1.22599 1.00373 0.98631 1.01651 1.42806 1.14289 1.74625 1.07443 1.19041 0.92902 1.33833 0.91591 0.89116 1.24658 0.96436 1.00919 0.96968 1.69691 1.06684 1.48937 1.32722 0.86614 0.77630 0.78162 0.86502 1.20988 1.21720 1.20286 1.22590 0.83129 1.02456 0.93264 1.84131 0.95721 1.63648 1.09436 0.93555 0.93520 0.88987 0.90621 0.89887 0.79259 0.90933 0.90888 0.89477 0.89158 0.93202 0.93750 0.92089 0.80609 0.93047 0.89746 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.18 10.69 -35.23 -0.38 -3.56 16 3 C 0.14 0.95 6.51 36.01 0.23 1.18 16 4 C 0.03 0.26 7.02 -13.29 -0.09 0.17 16 5 N -0.46 -5.41 10.51 -11.50 -0.12 -5.54 16 6 C 0.12 1.39 11.09 -18.85 -0.21 1.18 16 7 C -0.28 -3.41 6.40 -37.09 -0.24 -3.65 16 8 C 0.61 9.00 7.82 -12.85 -0.10 8.90 16 9 O -0.52 -9.62 17.12 5.20 0.09 -9.53 16 10 N -0.61 -8.17 3.33 -172.03 -0.57 -8.75 16 11 C 0.09 0.84 5.19 -3.06 -0.02 0.83 16 12 C -0.12 -1.22 6.31 -24.89 -0.16 -1.37 16 13 C -0.11 -1.49 3.07 -88.47 -0.27 -1.76 16 14 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.19 3.27 2.84 -67.93 -0.19 3.08 16 16 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 17 C -0.17 -2.70 8.85 37.16 0.33 -2.37 16 18 N -0.75 -16.87 4.87 -53.43 -0.26 -17.13 16 19 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 23 Si 0.88 22.36 27.74 -169.99 -4.71 17.65 16 24 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 27 C 0.11 1.61 5.69 -2.51 -0.01 1.59 16 28 S 0.21 1.86 18.65 -107.50 -2.00 -0.14 16 29 H 0.05 0.13 8.14 -51.92 -0.42 -0.29 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.19 2.12 8.06 -52.49 -0.42 1.69 16 35 H 0.07 0.63 6.86 -51.93 -0.36 0.28 16 36 H 0.07 0.59 7.03 -51.93 -0.37 0.22 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.83 5.74 -51.93 -0.30 0.53 16 39 H 0.05 0.78 6.04 -51.93 -0.31 0.47 16 40 H 0.04 0.54 6.07 -51.93 -0.32 0.23 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.36 8.20 4.93 -40.82 -0.20 8.00 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.08 1.28 5.66 -51.93 -0.29 0.99 16 45 H 0.08 1.40 7.80 -51.93 -0.40 1.00 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -34.95 373.07 -7.80 -42.74 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.36 Total: 4.61 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 0.13 Total: 2.29 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.18 Total: -59.69 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.29 Total: -13.09 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.00 Total: -0.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.95 -7.80 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.798 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds