Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42903 * 114.00341 * 2 1 4 4 C 1.50700 * 109.47273 * 179.97438 * 3 2 1 5 5 N 1.29431 * 124.80517 * 89.97763 * 4 3 2 6 6 C 1.30939 * 117.36418 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19332 * 0.02562 * 6 5 4 8 8 C 1.46686 * 126.13247 * 180.02562 * 7 6 5 9 9 O 1.21690 * 119.99628 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99841 * 179.97438 * 8 7 6 11 11 C 1.47018 * 125.65103 * 0.02562 * 10 8 7 12 12 C 1.54325 * 107.40412 * 180.94532 * 11 10 8 13 13 C 1.55552 * 102.75696 * 22.23822 * 12 11 10 14 14 H 1.09000 * 111.02984 * 82.56372 * 13 12 11 15 15 C 1.53002 * 110.99828 * 206.38810 * 13 12 11 16 16 H 1.08997 * 109.47245 * 53.66507 * 15 13 12 17 17 C 1.52998 * 109.47187 * 293.66709 * 15 13 12 18 18 N 1.46503 * 109.47278 * 173.66808 * 15 13 12 19 19 C 1.36929 * 120.00227 * 205.00168 * 18 15 13 20 20 H 1.08008 * 120.00081 * 359.97438 * 19 18 15 21 21 C 1.38814 * 120.00493 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00651 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99347 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47342 * 90.00246 * 23 21 19 25 25 H 1.48503 * 109.46765 * 209.99832 * 23 21 19 26 26 H 1.48498 * 109.47537 * 329.99839 * 23 21 19 27 27 C 1.47430 * 125.64364 * 179.97438 * 10 8 7 28 28 S 1.70955 * 124.80507 * 270.33124 * 4 3 2 29 29 H 1.09004 * 109.46983 * 60.00144 * 1 2 3 30 30 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47337 * 299.99909 * 1 2 3 32 32 H 1.09000 * 109.46851 * 59.99772 * 3 2 1 33 33 H 1.09003 * 109.47127 * 300.00161 * 3 2 1 34 34 H 1.08003 * 122.90506 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.88241 * 300.44061 * 11 10 8 36 36 H 1.09000 * 109.88049 * 61.45190 * 11 10 8 37 37 H 1.08993 * 110.72531 * 140.63023 * 12 11 10 38 38 H 1.09000 * 110.72094 * 263.91129 * 12 11 10 39 39 H 1.09005 * 109.47430 * 300.00311 * 17 15 13 40 40 H 1.09000 * 109.47079 * 59.99955 * 17 15 13 41 41 H 1.08993 * 109.47389 * 180.02562 * 17 15 13 42 42 H 0.97004 * 119.99825 * 24.99825 * 18 15 13 43 43 H 0.96991 * 120.00258 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.36526 * 274.74791 * 27 10 8 45 45 H 1.08992 * 110.36633 * 36.96256 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2494 1.1274 -1.0618 6 6 5.5436 1.0245 -0.8917 7 6 5.9328 0.9933 0.4075 8 6 7.3120 0.8840 0.8948 9 8 8.2331 0.8109 0.1029 10 7 7.5590 0.8646 2.2196 11 6 6.5454 0.9446 3.2815 12 6 7.2893 0.9104 4.6332 13 6 8.7200 1.3858 4.2500 14 1 8.7708 2.4736 4.2016 15 6 9.7609 0.8341 5.2263 16 1 9.6615 -0.2495 5.2894 17 6 9.5384 1.4481 6.6099 18 7 11.1044 1.1744 4.7514 19 6 12.1760 0.4058 5.1202 20 1 12.0309 -0.4510 5.7616 21 6 13.4490 0.7279 4.6699 22 7 14.4791 -0.0105 5.0248 23 14 13.6999 2.2094 3.5601 24 1 13.9596 3.4122 4.3913 25 1 14.8597 1.9665 2.6650 26 1 12.4801 2.4272 2.7417 27 6 8.8904 0.7586 2.8438 28 16 4.4840 1.1015 1.4047 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.2409 0.9683 -1.7145 35 1 5.9853 1.8752 3.1901 36 1 5.8664 0.0949 3.2105 37 1 6.8299 1.5974 5.3438 38 1 7.3132 -0.1027 5.0348 39 1 9.6378 2.5318 6.5468 40 1 8.5388 1.1950 6.9632 41 1 10.2802 1.0555 7.3052 42 1 11.2349 1.9441 4.1757 43 1 15.3686 0.2148 4.7104 44 1 9.1878 -0.2866 2.9280 45 1 9.6264 1.3162 2.2647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279044607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = -11.470804 kcal Electronic energy + Delta-G solvation = -26780.816165 eV Core-core repulsion = 22926.161839 eV Total energy + Delta-G solvation = -3854.654326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50702 -39.82091 -38.32183 -37.76712 -35.44919 -32.65337 -31.92139 -30.87540 -29.34703 -29.00274 -28.16273 -26.67267 -24.69439 -23.86120 -23.48674 -21.73480 -21.12845 -19.92716 -19.17097 -18.73910 -17.60614 -17.13793 -17.01147 -16.49479 -16.07784 -15.98928 -15.36915 -15.11155 -14.69802 -14.52613 -14.09473 -14.08280 -13.77228 -13.29198 -13.11415 -12.93260 -12.84921 -12.66318 -12.47079 -12.27536 -12.07217 -11.99826 -11.80792 -11.69041 -11.06904 -10.92843 -10.71903 -10.62844 -10.43192 -10.33097 -10.22236 -10.02971 -9.86599 -9.81012 -9.58312 -9.39947 -8.95211 -8.71245 -7.29332 -5.76990 -3.13146 -0.15519 0.79525 1.22439 2.09299 2.76117 2.97094 3.21000 3.39444 3.42793 3.48094 3.84247 4.22856 4.36276 4.44331 4.59906 4.66602 4.73275 4.76614 4.79926 4.82911 4.88408 4.98951 5.07902 5.16596 5.22687 5.39658 5.51310 5.58757 5.69644 5.73509 5.75301 5.87271 6.00918 6.08690 6.15177 6.23146 6.33803 6.42010 6.45100 6.72661 6.94349 7.22182 7.34605 7.93515 7.97681 8.41651 9.19543 9.92304 10.10965 11.41164 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.002462 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.854932 B =11367.926591 C =12258.999540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.026 3.974 5 N -0.461 5.461 6 C 0.115 3.885 7 C -0.278 4.278 8 C 0.605 3.395 9 O -0.520 6.520 10 N -0.612 5.612 11 C 0.086 3.914 12 C -0.117 4.117 13 C -0.106 4.106 14 H 0.082 0.918 15 C 0.190 3.810 16 H 0.059 0.941 17 C -0.164 4.164 18 N -0.749 5.749 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.276 1.276 27 C 0.119 3.881 28 S 0.212 5.788 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.191 0.809 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.081 0.919 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.091 4.125 -5.283 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.248 4.248 5 N -0.176 5.176 6 C -0.043 4.043 7 C -0.403 4.403 8 C 0.391 3.609 9 O -0.398 6.398 10 N -0.345 5.345 11 C -0.039 4.039 12 C -0.155 4.155 13 C -0.127 4.127 14 H 0.101 0.899 15 C 0.080 3.920 16 H 0.077 0.923 17 C -0.224 4.224 18 N -0.392 5.392 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.002 4.002 28 S 0.469 5.531 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.208 0.792 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -30.882 3.755 -5.115 31.527 hybrid contribution 0.682 1.253 -1.567 2.119 sum -30.199 5.008 -6.682 31.333 Atomic orbital electron populations 1.22823 0.79797 1.03476 1.00410 1.87969 1.20467 1.26122 1.95535 1.20814 0.84460 0.86216 1.02656 1.27179 1.00840 1.03543 0.93210 1.66197 1.04808 1.14936 1.31662 1.22179 0.90660 0.95915 0.95592 1.25910 0.98093 1.18283 0.97985 1.16294 0.85952 0.77460 0.81179 1.90889 1.44263 1.50450 1.54210 1.48417 1.09937 1.71995 1.04185 1.22232 0.91568 1.01545 0.88521 1.22706 0.95135 1.03249 0.94438 1.22825 0.94711 1.00688 0.94432 0.89948 1.20129 0.83770 0.97647 0.90447 0.92302 1.22407 0.99767 1.00791 0.99458 1.42788 1.02812 1.33759 1.59797 1.19021 0.85026 1.07756 1.25458 0.89172 1.24658 0.95550 0.98537 1.00233 1.69690 0.98797 1.40317 1.49245 0.86592 0.77437 0.83670 0.81080 1.21192 1.21750 1.20219 1.22361 0.82642 1.02376 0.92809 1.84113 0.95769 1.63743 1.09484 0.93529 0.88996 0.93573 0.90653 0.89896 0.79241 0.91053 0.90908 0.89490 0.89687 0.93586 0.94028 0.92185 0.80656 0.93056 0.90126 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.20 10.69 -35.23 -0.38 -3.58 16 3 C 0.14 0.97 6.51 36.01 0.23 1.20 16 4 C 0.03 0.26 7.02 -13.29 -0.09 0.17 16 5 N -0.46 -5.52 10.51 -11.50 -0.12 -5.64 16 6 C 0.11 1.41 11.09 -18.86 -0.21 1.20 16 7 C -0.28 -3.48 6.40 -37.10 -0.24 -3.72 16 8 C 0.60 9.28 7.82 -12.85 -0.10 9.18 16 9 O -0.52 -9.94 17.12 5.20 0.09 -9.85 16 10 N -0.61 -8.47 3.33 -172.05 -0.57 -9.04 16 11 C 0.09 0.85 5.18 -3.07 -0.02 0.83 16 12 C -0.12 -1.15 5.62 -24.68 -0.14 -1.28 16 13 C -0.11 -1.46 2.63 -88.25 -0.23 -1.70 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 15 C 0.19 3.25 2.41 -67.93 -0.16 3.08 16 16 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 17 C -0.16 -2.53 9.34 37.16 0.35 -2.19 16 18 N -0.75 -16.69 4.62 -53.42 -0.25 -16.94 16 19 C -0.24 -6.61 10.41 -15.06 -0.16 -6.77 16 20 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 23 Si 0.88 22.24 27.73 -169.99 -4.71 17.52 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 27 C 0.12 1.88 6.09 -2.52 -0.02 1.87 16 28 S 0.21 1.89 18.64 -107.50 -2.00 -0.11 16 29 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.19 2.18 8.06 -52.48 -0.42 1.76 16 35 H 0.07 0.60 6.88 -51.93 -0.36 0.24 16 36 H 0.07 0.63 7.00 -51.93 -0.36 0.27 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.50 7.51 -51.93 -0.39 0.11 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 45 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -34.95 381.26 -8.02 -42.97 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.83 Total: 4.06 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 0.24 Total: 3.22 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.16 Total: -59.98 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.29 Total: -13.43 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.00 Total: -0.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.95 -8.02 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.503 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds