Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42903 * 114.00341 * 2 1 4 4 C 1.50700 * 109.47273 * 179.97438 * 3 2 1 5 5 N 1.29431 * 124.80517 * 89.97763 * 4 3 2 6 6 C 1.30939 * 117.36418 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19332 * 0.02562 * 6 5 4 8 8 C 1.46686 * 126.13247 * 180.02562 * 7 6 5 9 9 O 1.21690 * 119.99628 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99841 * 179.97438 * 8 7 6 11 11 C 1.47018 * 125.65103 * 0.02562 * 10 8 7 12 12 C 1.54325 * 107.40412 * 180.94532 * 11 10 8 13 13 C 1.55552 * 102.75696 * 22.23822 * 12 11 10 14 14 H 1.09000 * 111.02984 * 82.56372 * 13 12 11 15 15 C 1.53002 * 110.99828 * 206.38810 * 13 12 11 16 16 H 1.08997 * 109.47245 * 53.66507 * 15 13 12 17 17 C 1.52998 * 109.47187 * 293.66709 * 15 13 12 18 18 N 1.46503 * 109.47278 * 173.66808 * 15 13 12 19 19 C 1.36929 * 120.00227 * 205.00168 * 18 15 13 20 20 H 1.08008 * 120.00081 * 359.97438 * 19 18 15 21 21 C 1.38814 * 120.00493 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00651 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99347 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47342 * 90.00246 * 23 21 19 25 25 H 1.48503 * 109.46765 * 209.99832 * 23 21 19 26 26 H 1.48498 * 109.47537 * 329.99839 * 23 21 19 27 27 C 1.47430 * 125.64364 * 179.97438 * 10 8 7 28 28 S 1.70955 * 124.80507 * 270.33124 * 4 3 2 29 29 H 1.09004 * 109.46983 * 60.00144 * 1 2 3 30 30 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47337 * 299.99909 * 1 2 3 32 32 H 1.09000 * 109.46851 * 59.99772 * 3 2 1 33 33 H 1.09003 * 109.47127 * 300.00161 * 3 2 1 34 34 H 1.08003 * 122.90506 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.88241 * 300.44061 * 11 10 8 36 36 H 1.09000 * 109.88049 * 61.45190 * 11 10 8 37 37 H 1.08993 * 110.72531 * 140.63023 * 12 11 10 38 38 H 1.09000 * 110.72094 * 263.91129 * 12 11 10 39 39 H 1.09005 * 109.47430 * 300.00311 * 17 15 13 40 40 H 1.09000 * 109.47079 * 59.99955 * 17 15 13 41 41 H 1.08993 * 109.47389 * 180.02562 * 17 15 13 42 42 H 0.97004 * 119.99825 * 24.99825 * 18 15 13 43 43 H 0.96991 * 120.00258 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.36526 * 274.74791 * 27 10 8 45 45 H 1.08992 * 110.36633 * 36.96256 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2494 1.1274 -1.0618 6 6 5.5436 1.0245 -0.8917 7 6 5.9328 0.9933 0.4075 8 6 7.3120 0.8840 0.8948 9 8 8.2331 0.8109 0.1029 10 7 7.5590 0.8646 2.2196 11 6 6.5454 0.9446 3.2815 12 6 7.2893 0.9104 4.6332 13 6 8.7200 1.3858 4.2500 14 1 8.7708 2.4736 4.2016 15 6 9.7609 0.8341 5.2263 16 1 9.6615 -0.2495 5.2894 17 6 9.5384 1.4481 6.6099 18 7 11.1044 1.1744 4.7514 19 6 12.1760 0.4058 5.1202 20 1 12.0309 -0.4510 5.7616 21 6 13.4490 0.7279 4.6699 22 7 14.4791 -0.0105 5.0248 23 14 13.6999 2.2094 3.5601 24 1 13.9596 3.4122 4.3913 25 1 14.8597 1.9665 2.6650 26 1 12.4801 2.4272 2.7417 27 6 8.8904 0.7586 2.8438 28 16 4.4840 1.1015 1.4047 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.2409 0.9683 -1.7145 35 1 5.9853 1.8752 3.1901 36 1 5.8664 0.0949 3.2105 37 1 6.8299 1.5974 5.3438 38 1 7.3132 -0.1027 5.0348 39 1 9.6378 2.5318 6.5468 40 1 8.5388 1.1950 6.9632 41 1 10.2802 1.0555 7.3052 42 1 11.2349 1.9441 4.1757 43 1 15.3686 0.2148 4.7104 44 1 9.1878 -0.2866 2.9280 45 1 9.6264 1.3162 2.2647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279044607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = -37.575118 kcal Electronic energy + Delta-G solvation = -26781.948133 eV Core-core repulsion = 22926.161839 eV Total energy + Delta-G solvation = -3855.786294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52288 -40.75142 -39.14054 -38.69082 -36.97718 -34.39229 -32.94417 -32.25583 -30.44024 -30.25120 -29.11423 -27.14093 -25.79049 -25.37847 -24.44793 -22.93291 -22.24704 -21.31884 -20.04205 -19.82685 -19.35574 -17.98063 -17.62355 -17.53997 -17.07816 -16.69611 -16.55990 -16.15963 -15.98667 -15.65499 -15.29777 -15.20303 -14.95641 -14.63610 -14.28793 -14.09586 -13.93010 -13.69740 -13.64039 -13.28965 -13.25796 -13.10768 -12.85170 -12.58468 -12.46232 -12.37861 -12.06055 -11.95898 -11.85034 -11.71494 -11.46653 -11.41122 -10.99440 -10.84196 -10.70257 -10.63446 -10.26125 -9.76397 -9.29062 -8.01041 -5.32164 -1.00195 0.00687 0.41442 1.18028 1.35728 1.38992 1.44724 1.68621 1.93408 2.47894 2.62797 3.17139 3.28396 3.32820 3.50576 3.57401 3.78154 3.80534 3.96699 4.09347 4.15708 4.23282 4.31298 4.36514 4.45032 4.54353 4.56265 4.60972 4.61164 4.79203 4.83255 4.86952 4.91681 4.91790 5.01770 5.09875 5.15548 5.27571 5.40138 5.65118 5.81197 6.05353 6.21360 6.24126 6.46596 6.79698 7.10714 7.88692 8.04380 9.20680 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.002462 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.854932 B =11367.926591 C =12258.999540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.134 3.866 4 C 0.022 3.978 5 N -0.487 5.487 6 C 0.112 3.888 7 C -0.311 4.311 8 C 0.600 3.400 9 O -0.575 6.575 10 N -0.610 5.610 11 C 0.078 3.922 12 C -0.105 4.105 13 C -0.096 4.096 14 H 0.092 0.908 15 C 0.182 3.818 16 H 0.049 0.951 17 C -0.154 4.154 18 N -0.754 5.754 19 C -0.215 4.215 20 H 0.062 0.938 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.946 3.054 24 H -0.276 1.276 25 H -0.303 1.303 26 H -0.259 1.259 27 C 0.119 3.881 28 S 0.293 5.707 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.183 0.817 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.029 0.971 42 H 0.362 0.638 43 H 0.255 0.745 44 H 0.060 0.940 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.725 5.857 -4.044 36.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.054 3.946 4 C -0.251 4.251 5 N -0.204 5.204 6 C -0.047 4.047 7 C -0.436 4.436 8 C 0.388 3.612 9 O -0.457 6.457 10 N -0.342 5.342 11 C -0.044 4.044 12 C -0.143 4.143 13 C -0.116 4.116 14 H 0.110 0.890 15 C 0.074 3.926 16 H 0.067 0.933 17 C -0.214 4.214 18 N -0.397 5.397 19 C -0.347 4.347 20 H 0.080 0.920 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.775 3.225 24 H -0.203 1.203 25 H -0.230 1.230 26 H -0.184 1.184 27 C -0.004 4.004 28 S 0.552 5.448 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.200 0.800 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.048 0.952 42 H 0.194 0.806 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -35.636 5.507 -3.822 36.261 hybrid contribution 1.929 0.618 -1.892 2.772 sum -33.706 6.125 -5.714 34.732 Atomic orbital electron populations 1.23019 0.77943 1.04282 1.01774 1.87915 1.22527 1.26844 1.95833 1.21079 0.82465 0.86273 1.04752 1.27859 1.02412 1.01425 0.93399 1.66265 1.04554 1.16578 1.32959 1.22194 0.91134 0.95663 0.95757 1.25671 0.98266 1.20501 0.99147 1.16705 0.86692 0.76574 0.81219 1.90844 1.46225 1.52986 1.55625 1.48457 1.10078 1.71130 1.04568 1.22571 0.91047 1.03667 0.87151 1.22774 0.91831 1.04637 0.95035 1.22661 0.96266 1.00811 0.91862 0.89014 1.20413 0.82106 0.97571 0.92482 0.93330 1.22256 1.01437 1.00717 0.96975 1.42875 1.03827 1.33152 1.59871 1.19011 0.86330 1.06465 1.22867 0.92050 1.25396 0.95576 1.01870 1.02833 1.69859 0.99169 1.42794 1.51762 0.85538 0.77326 0.80445 0.79224 1.20259 1.22985 1.18448 1.22173 0.83344 1.00816 0.94040 1.83594 0.92272 1.61864 1.07115 0.92741 0.88586 0.91611 0.87215 0.89170 0.79982 0.88571 0.88995 0.85685 0.88869 0.92995 0.89588 0.95151 0.80558 0.93614 0.92144 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.40 16 2 O -0.41 -5.74 10.69 -148.98 -1.59 -7.33 16 3 C 0.13 1.43 6.51 71.24 0.46 1.89 16 4 C 0.02 0.38 7.02 88.46 0.62 1.00 16 5 N -0.49 -11.19 10.51 -190.30 -2.00 -13.19 16 6 C 0.11 2.78 11.09 84.23 0.93 3.71 16 7 C -0.31 -7.51 6.40 23.88 0.15 -7.35 16 8 C 0.60 18.53 7.82 86.45 0.68 19.21 16 9 O -0.58 -23.16 17.12 -4.32 -0.07 -23.23 16 10 N -0.61 -16.17 3.33 -816.48 -2.72 -18.89 16 11 C 0.08 1.23 5.18 86.73 0.45 1.68 16 12 C -0.10 -1.55 5.62 31.92 0.18 -1.37 16 13 C -0.10 -2.40 2.63 -9.26 -0.02 -2.42 16 14 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 15 C 0.18 5.96 2.41 44.99 0.11 6.07 16 16 H 0.05 1.70 8.05 -2.39 -0.02 1.68 16 17 C -0.15 -4.32 9.34 71.98 0.67 -3.65 16 18 N -0.75 -33.52 4.62 -322.93 -1.49 -35.02 16 19 C -0.22 -12.02 10.41 84.04 0.87 -11.15 16 20 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 22 N -0.98 -63.87 13.97 21.65 0.30 -63.57 16 23 Si 0.95 47.05 27.73 68.60 1.90 48.95 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 26 H -0.26 -12.00 6.52 99.48 0.65 -11.35 16 27 C 0.12 3.74 6.09 86.86 0.53 4.27 16 28 S 0.29 4.20 18.64 -56.49 -1.05 3.15 16 29 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.18 4.52 8.06 -2.91 -0.02 4.49 16 35 H 0.10 1.09 6.88 -2.39 -0.02 1.07 16 36 H 0.09 1.15 7.00 -2.39 -0.02 1.14 16 37 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.30 8.02 -2.39 -0.02 1.28 16 39 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.09 1.66 7.51 -2.39 -0.02 1.64 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.36 15.95 5.66 -92.71 -0.52 15.42 16 43 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 44 H 0.06 2.11 8.04 -2.39 -0.02 2.09 16 45 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 Total: -1.00 -81.93 381.26 1.05 -80.88 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.42 Total: 18.39 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 7.35 Total: 9.85 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -5.91 Total: -130.66 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.67 Total: -30.57 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.95 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.05 Total: 3.15 kcal Total: -81.93 1.05 -80.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.308 kcal (2) G-P(sol) polarization free energy of solvation -81.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds