Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.52995 * 109.46868 * 240.00538 * 2 1 3 5 5 N 1.46500 * 109.47025 * 185.00230 * 4 2 1 6 6 C 1.34771 * 120.00525 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99826 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00487 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47259 * 180.02562 * 8 6 5 10 10 C 1.76196 * 100.00158 * 180.02562 * 9 8 6 11 11 H 1.08007 * 119.99843 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00149 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99851 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99956 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46850 * 90.00387 * 14 12 10 16 16 H 1.48507 * 109.47163 * 209.99815 * 14 12 10 17 17 H 1.48494 * 109.47565 * 330.00280 * 14 12 10 18 18 N 1.46495 * 109.46964 * 119.99852 * 2 1 3 19 19 C 1.46505 * 119.99948 * 60.00661 * 18 2 1 20 20 C 1.34776 * 119.99994 * 239.99858 * 18 2 1 21 21 O 1.21618 * 120.00275 * 355.80139 * 20 18 2 22 22 C 1.47268 * 119.99647 * 176.08311 * 20 18 2 23 23 C 1.46688 * 126.94520 * 352.94905 * 22 20 18 24 24 C 1.34476 * 106.33346 * 180.02562 * 23 22 20 25 25 N 1.36448 * 108.85841 * 0.02562 * 24 23 22 26 26 C 1.46497 * 124.84922 * 179.97438 * 25 24 23 27 27 C 1.34652 * 110.29569 * 359.72266 * 25 24 23 28 28 H 1.08997 * 109.46878 * 59.99580 * 1 2 3 29 29 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47327 * 299.99950 * 1 2 3 31 31 H 1.09002 * 109.47105 * 304.99417 * 4 2 1 32 32 H 1.08995 * 109.47865 * 65.00084 * 4 2 1 33 33 H 0.97006 * 120.00186 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46901 * 300.00203 * 8 6 5 35 35 H 1.08994 * 109.46933 * 60.00358 * 8 6 5 36 36 H 0.96999 * 119.99493 * 179.97438 * 13 12 10 37 37 H 1.09004 * 109.46651 * 265.74939 * 19 18 2 38 38 H 1.08998 * 109.47205 * 25.74877 * 19 18 2 39 39 H 1.08991 * 109.47435 * 145.75298 * 19 18 2 40 40 H 1.08007 * 126.83067 * 359.97438 * 23 22 20 41 41 H 1.08004 * 125.57104 * 179.97438 * 24 23 22 42 42 H 1.09007 * 109.47431 * 90.02299 * 26 25 24 43 43 H 1.09007 * 109.46970 * 210.01608 * 26 25 24 44 44 H 1.08998 * 109.47730 * 330.01527 * 26 25 24 45 45 H 1.08008 * 125.80430 * 180.28736 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4290 -2.1907 7 8 3.5699 -1.8847 -3.1391 8 6 5.6750 -1.5367 -2.1306 9 16 6.2783 -2.3900 -3.6085 10 6 8.0100 -2.3772 -3.2837 11 1 8.3863 -1.9240 -2.3784 12 6 8.8906 -2.9495 -4.1911 13 7 10.1843 -2.9404 -3.9482 14 14 8.2397 -3.7340 -5.7565 15 1 8.1821 -2.7140 -6.8343 16 1 9.1420 -4.8392 -6.1686 17 1 6.8777 -4.2724 -5.5111 18 7 2.0183 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4279 20 6 2.7932 -0.0356 2.0833 21 8 3.1502 1.1042 1.8539 22 6 3.2127 -0.7022 3.3276 23 6 2.7651 -2.0087 3.8220 24 6 3.4054 -2.2119 4.9870 25 7 4.2057 -1.1370 5.2437 26 6 5.0604 -0.9927 6.4247 27 6 4.1018 -0.2303 4.2535 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7197 -1.2952 32 1 1.7517 -0.1582 -2.1370 33 1 3.9825 -0.4622 -0.4319 34 1 6.1093 -0.5380 -2.0854 35 1 5.9636 -2.0991 -1.2427 36 1 10.7996 -3.3408 -4.5822 37 1 0.7798 -2.1446 2.0627 38 1 1.4560 -2.5777 0.4741 39 1 2.4943 -2.6008 1.9196 40 1 2.0607 -2.6746 3.3456 41 1 3.3023 -3.0831 5.6170 42 1 6.0446 -1.4113 6.2144 43 1 5.1606 0.0638 6.6738 44 1 4.6119 -1.5230 7.2648 45 1 4.6292 0.7108 4.2007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280430059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -1.985604 kcal Electronic energy + Delta-G solvation = -26852.167768 eV Core-core repulsion = 22997.924751 eV Total energy + Delta-G solvation = -3854.243017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61380 -40.00855 -38.89570 -36.62750 -34.30687 -33.19738 -32.40013 -31.67285 -29.52348 -29.44313 -27.42050 -26.91442 -25.93317 -25.47345 -23.25001 -21.05056 -20.45985 -20.25987 -19.33005 -17.82209 -17.62465 -16.81757 -16.42703 -16.25593 -15.85656 -15.55641 -15.11988 -15.03072 -14.90212 -14.43859 -14.02431 -13.86148 -13.56158 -13.47362 -13.29425 -13.07491 -12.99252 -12.89024 -12.75397 -12.66466 -12.53144 -12.38536 -12.13338 -11.79140 -11.49832 -11.22643 -11.13209 -10.97519 -10.55554 -9.96662 -9.82293 -9.45957 -8.97377 -8.92329 -8.91031 -8.86405 -8.56652 -8.45234 -6.86831 -6.25209 -3.96227 1.53989 2.12763 2.45073 2.80305 2.90933 3.06753 3.35338 3.37931 3.40025 3.53570 3.74136 4.29982 4.36713 4.45766 4.59145 4.66318 4.68603 4.74467 4.82616 4.92895 4.95112 4.96051 5.04403 5.13833 5.15132 5.28055 5.33945 5.36471 5.43408 5.52438 5.61820 5.67151 5.73236 5.78551 5.84662 5.93722 6.10181 6.34670 6.44406 6.63460 6.71885 6.88224 7.26130 7.71297 7.98142 8.13729 8.46094 8.57727 9.21100 10.84170 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.002812 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.522411 B = 9953.419028 C =11735.900841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 H 0.109 0.891 4 C 0.112 3.888 5 N -0.731 5.731 6 C 0.531 3.469 7 O -0.523 6.523 8 C -0.123 4.123 9 S -0.141 6.141 10 C -0.520 4.520 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.882 5.882 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.235 1.235 18 N -0.605 5.605 19 C 0.064 3.936 20 C 0.592 3.408 21 O -0.552 6.552 22 C -0.234 4.234 23 C -0.183 4.183 24 C -0.019 4.019 25 N -0.447 5.447 26 C 0.067 3.933 27 C 0.078 3.922 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.401 0.599 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.270 0.730 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.905 3.323 22.811 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.127 0.873 4 C -0.013 4.013 5 N -0.385 5.385 6 C 0.317 3.683 7 O -0.398 6.398 8 C -0.274 4.274 9 S 0.085 5.915 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.518 5.518 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 N -0.338 5.338 19 C -0.079 4.079 20 C 0.383 3.617 21 O -0.432 6.432 22 C -0.244 4.244 23 C -0.206 4.206 24 C -0.146 4.146 25 N -0.122 5.122 26 C -0.074 4.074 27 C -0.058 4.058 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.180 0.820 41 H 0.183 0.817 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.352 3.110 21.352 28.984 hybrid contribution 0.995 0.209 0.887 1.349 sum -18.357 3.319 22.239 29.027 Atomic orbital electron populations 1.22048 0.93724 1.02795 1.02910 1.21365 0.94774 0.98457 0.83346 0.87325 1.21661 0.81152 1.01126 0.97346 1.45883 1.06944 1.61327 1.24356 1.20242 0.89392 0.76901 0.81744 1.90687 1.69884 1.46545 1.32693 1.23269 0.93571 1.05444 1.05098 1.84725 1.06859 1.74643 1.25282 1.22334 0.88702 1.44464 1.11269 0.89436 1.24714 0.94096 0.94563 0.97967 1.69946 1.01544 1.43642 1.36710 0.86727 0.81285 0.80188 0.83599 1.19215 1.19994 1.15901 1.47613 1.51272 1.12529 1.22360 1.22426 1.01378 0.81691 1.02384 1.17462 0.77076 0.84921 0.82195 1.90778 1.56416 1.18319 1.77660 1.20237 1.07421 0.98424 0.98347 1.22794 1.04445 0.96907 0.96486 1.21873 0.98854 0.93456 1.00379 1.43669 1.34424 1.15864 1.18214 1.22153 0.94831 1.04269 0.86189 1.21805 1.00138 0.95525 0.88351 0.90935 0.91921 0.91779 0.91274 0.90455 0.76500 0.88571 0.88638 0.91994 0.92476 0.91082 0.88996 0.82039 0.81652 0.90398 0.89547 0.89564 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.19 37.16 0.34 -0.82 16 2 C 0.12 1.24 2.79 -67.93 -0.19 1.05 16 3 H 0.11 1.26 6.91 -51.93 -0.36 0.90 16 4 C 0.11 1.34 4.93 -4.04 -0.02 1.32 16 5 N -0.73 -10.68 5.39 -60.30 -0.32 -11.00 16 6 C 0.53 10.08 7.85 -10.99 -0.09 9.99 16 7 O -0.52 -11.63 15.86 5.55 0.09 -11.54 16 8 C -0.12 -2.55 6.16 36.01 0.22 -2.33 16 9 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 10 C -0.52 -15.38 10.04 30.94 0.31 -15.07 16 11 H 0.09 2.71 8.03 -52.48 -0.42 2.28 16 12 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 13 N -0.88 -27.05 13.97 55.49 0.78 -26.28 16 14 Si 0.86 22.16 27.74 -169.99 -4.71 17.45 16 15 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 18 N -0.60 -6.13 2.24 -175.26 -0.39 -6.52 16 19 C 0.06 0.49 7.73 59.85 0.46 0.96 16 20 C 0.59 7.32 7.36 -12.59 -0.09 7.22 16 21 O -0.55 -8.50 16.26 5.26 0.09 -8.41 16 22 C -0.23 -2.51 6.07 -103.35 -0.63 -3.14 16 23 C -0.18 -1.52 8.85 -37.50 -0.33 -1.85 16 24 C -0.02 -0.14 11.34 -16.83 -0.19 -0.33 16 25 N -0.45 -3.24 3.09 -124.53 -0.38 -3.63 16 26 C 0.07 0.24 11.03 59.85 0.66 0.90 16 27 C 0.08 0.74 11.13 -16.85 -0.19 0.55 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.82 6.86 -51.93 -0.36 0.46 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 5.62 7.87 -40.82 -0.32 5.29 16 34 H 0.10 1.91 8.14 -51.91 -0.42 1.48 16 35 H 0.10 1.87 8.14 -51.92 -0.42 1.44 16 36 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.06 0.34 7.60 -51.93 -0.39 -0.05 16 38 H 0.07 0.55 6.53 -51.93 -0.34 0.21 16 39 H 0.09 0.72 4.90 -51.93 -0.25 0.47 16 40 H 0.16 1.02 4.80 -52.48 -0.25 0.77 16 41 H 0.17 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.08 0.25 8.14 -51.92 -0.42 -0.18 16 43 H 0.09 0.21 8.13 -51.92 -0.42 -0.21 16 44 H 0.09 0.15 8.13 -51.93 -0.42 -0.27 16 45 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -37.86 384.73 -7.37 -45.23 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.48 Total: 3.42 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 0.18 Total: 1.18 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.33 Total: -47.43 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.17 Total: -19.96 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.86 -7.37 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280430059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.241 kcal (2) G-P(sol) polarization free energy of solvation -37.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds