Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.52995 * 109.46868 * 240.00538 * 2 1 3 5 5 N 1.46500 * 109.47025 * 185.00230 * 4 2 1 6 6 C 1.34771 * 120.00525 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99826 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00487 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47259 * 180.02562 * 8 6 5 10 10 C 1.76196 * 100.00158 * 180.02562 * 9 8 6 11 11 H 1.08007 * 119.99843 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00149 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99851 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99956 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46850 * 90.00387 * 14 12 10 16 16 H 1.48507 * 109.47163 * 209.99815 * 14 12 10 17 17 H 1.48494 * 109.47565 * 330.00280 * 14 12 10 18 18 N 1.46495 * 109.46964 * 119.99852 * 2 1 3 19 19 C 1.46505 * 119.99948 * 60.00661 * 18 2 1 20 20 C 1.34776 * 119.99994 * 239.99858 * 18 2 1 21 21 O 1.21618 * 120.00275 * 355.80139 * 20 18 2 22 22 C 1.47268 * 119.99647 * 176.08311 * 20 18 2 23 23 C 1.46688 * 126.94520 * 352.94905 * 22 20 18 24 24 C 1.34476 * 106.33346 * 180.02562 * 23 22 20 25 25 N 1.36448 * 108.85841 * 0.02562 * 24 23 22 26 26 C 1.46497 * 124.84922 * 179.97438 * 25 24 23 27 27 C 1.34652 * 110.29569 * 359.72266 * 25 24 23 28 28 H 1.08997 * 109.46878 * 59.99580 * 1 2 3 29 29 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47327 * 299.99950 * 1 2 3 31 31 H 1.09002 * 109.47105 * 304.99417 * 4 2 1 32 32 H 1.08995 * 109.47865 * 65.00084 * 4 2 1 33 33 H 0.97006 * 120.00186 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46901 * 300.00203 * 8 6 5 35 35 H 1.08994 * 109.46933 * 60.00358 * 8 6 5 36 36 H 0.96999 * 119.99493 * 179.97438 * 13 12 10 37 37 H 1.09004 * 109.46651 * 265.74939 * 19 18 2 38 38 H 1.08998 * 109.47205 * 25.74877 * 19 18 2 39 39 H 1.08991 * 109.47435 * 145.75298 * 19 18 2 40 40 H 1.08007 * 126.83067 * 359.97438 * 23 22 20 41 41 H 1.08004 * 125.57104 * 179.97438 * 24 23 22 42 42 H 1.09007 * 109.47431 * 90.02299 * 26 25 24 43 43 H 1.09007 * 109.46970 * 210.01608 * 26 25 24 44 44 H 1.08998 * 109.47730 * 330.01527 * 26 25 24 45 45 H 1.08008 * 125.80430 * 180.28736 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4290 -2.1907 7 8 3.5699 -1.8847 -3.1391 8 6 5.6750 -1.5367 -2.1306 9 16 6.2783 -2.3900 -3.6085 10 6 8.0100 -2.3772 -3.2837 11 1 8.3863 -1.9240 -2.3784 12 6 8.8906 -2.9495 -4.1911 13 7 10.1843 -2.9404 -3.9482 14 14 8.2397 -3.7340 -5.7565 15 1 8.1821 -2.7140 -6.8343 16 1 9.1420 -4.8392 -6.1686 17 1 6.8777 -4.2724 -5.5111 18 7 2.0183 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4279 20 6 2.7932 -0.0356 2.0833 21 8 3.1502 1.1042 1.8539 22 6 3.2127 -0.7022 3.3276 23 6 2.7651 -2.0087 3.8220 24 6 3.4054 -2.2119 4.9870 25 7 4.2057 -1.1370 5.2437 26 6 5.0604 -0.9927 6.4247 27 6 4.1018 -0.2303 4.2535 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7197 -1.2952 32 1 1.7517 -0.1582 -2.1370 33 1 3.9825 -0.4622 -0.4319 34 1 6.1093 -0.5380 -2.0854 35 1 5.9636 -2.0991 -1.2427 36 1 10.7996 -3.3408 -4.5822 37 1 0.7798 -2.1446 2.0627 38 1 1.4560 -2.5777 0.4741 39 1 2.4943 -2.6008 1.9196 40 1 2.0607 -2.6746 3.3456 41 1 3.3023 -3.0831 5.6170 42 1 6.0446 -1.4113 6.2144 43 1 5.1606 0.0638 6.6738 44 1 4.6119 -1.5230 7.2648 45 1 4.6292 0.7108 4.2007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280430059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -27.871468 kcal Electronic energy + Delta-G solvation = -26853.290263 eV Core-core repulsion = 22997.924751 eV Total energy + Delta-G solvation = -3855.365512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.23843 -41.03468 -40.18611 -37.62508 -35.40285 -34.68865 -33.96468 -32.49088 -30.94290 -30.13506 -28.04733 -27.91461 -27.46406 -26.82237 -23.99626 -21.80110 -21.69867 -21.12320 -20.10334 -19.82745 -18.27645 -17.94168 -17.69332 -17.48876 -17.09351 -16.67496 -16.43809 -16.24162 -15.85662 -15.71608 -15.07566 -14.98981 -14.84890 -14.73987 -14.24912 -14.06808 -13.99862 -13.88002 -13.52235 -13.36191 -13.33822 -13.15985 -13.06674 -13.02499 -12.98268 -12.88043 -12.59767 -12.15126 -11.91897 -11.86477 -11.18262 -11.06600 -10.88498 -10.57777 -10.17740 -9.75152 -9.49095 -9.21453 -9.01721 -8.52788 -6.24306 0.77147 0.95904 1.31493 1.45649 1.51631 1.54511 1.55944 1.86930 2.15097 2.24113 2.29246 2.56110 2.69260 2.85222 3.59741 3.78234 3.92448 4.00552 4.07305 4.09770 4.15499 4.23630 4.28022 4.31702 4.40814 4.45657 4.58274 4.61589 4.69065 4.72737 4.74209 4.79451 4.92603 5.02177 5.06998 5.12647 5.24155 5.36309 5.61955 5.69196 5.81185 6.09505 6.10644 6.33261 6.35421 6.47797 6.91697 7.10274 7.26128 8.60000 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.002812 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.522411 B = 9953.419028 C =11735.900841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 H 0.090 0.910 4 C 0.112 3.888 5 N -0.712 5.712 6 C 0.538 3.462 7 O -0.557 6.557 8 C -0.114 4.114 9 S -0.163 6.163 10 C -0.533 4.533 11 H 0.058 0.942 12 C 0.045 3.955 13 N -0.918 5.918 14 Si 0.917 3.083 15 H -0.262 1.262 16 H -0.257 1.257 17 H -0.235 1.235 18 N -0.602 5.602 19 C 0.060 3.940 20 C 0.585 3.415 21 O -0.596 6.596 22 C -0.264 4.264 23 C -0.193 4.193 24 C -0.016 4.016 25 N -0.444 5.444 26 C 0.060 3.940 27 C 0.062 3.938 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.405 0.595 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.278 0.722 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.179 0.821 41 H 0.198 0.802 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.779 2.089 23.856 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 H 0.108 0.892 4 C -0.013 4.013 5 N -0.364 5.364 6 C 0.324 3.676 7 O -0.435 6.435 8 C -0.265 4.265 9 S 0.063 5.937 10 C -0.681 4.681 11 H 0.076 0.924 12 C -0.160 4.160 13 N -0.555 5.555 14 Si 0.738 3.262 15 H -0.187 1.187 16 H -0.181 1.181 17 H -0.158 1.158 18 N -0.333 5.333 19 C -0.081 4.081 20 C 0.377 3.623 21 O -0.479 6.479 22 C -0.274 4.274 23 C -0.216 4.216 24 C -0.143 4.143 25 N -0.118 5.118 26 C -0.080 4.080 27 C -0.076 4.076 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.240 0.760 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.196 0.804 41 H 0.215 0.785 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.127 0.873 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.244 1.866 22.449 30.964 hybrid contribution 1.564 0.658 0.754 1.857 sum -19.680 2.524 23.203 30.530 Atomic orbital electron populations 1.21998 0.91242 1.03916 1.03493 1.21309 0.96494 0.97110 0.82484 0.89199 1.21884 0.78959 1.01950 0.98459 1.45754 1.08272 1.59360 1.23009 1.19832 0.88429 0.77213 0.82172 1.90677 1.70129 1.48517 1.34159 1.23261 0.95229 1.05276 1.02691 1.84562 1.04361 1.75915 1.28813 1.22470 0.90956 1.44245 1.10390 0.92395 1.25598 0.94315 0.94986 1.01100 1.70024 1.02756 1.44562 1.38200 0.85836 0.80905 0.79828 0.79604 1.18660 1.18089 1.15842 1.47688 1.50499 1.13376 1.21763 1.22598 1.02376 0.80091 1.03046 1.17823 0.76884 0.84572 0.82984 1.90742 1.58263 1.20157 1.78715 1.20355 1.08832 0.99937 0.98293 1.23032 1.05268 0.96198 0.97117 1.22441 0.97683 0.93924 1.00241 1.43950 1.34246 1.15239 1.18381 1.22428 0.94678 1.05428 0.85484 1.21917 1.00367 0.96140 0.89145 0.89849 0.90489 0.91728 0.90357 0.90320 0.75965 0.87740 0.87421 0.91289 0.90154 0.90781 0.88955 0.80365 0.78491 0.89945 0.88685 0.87273 0.81007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.19 71.98 0.66 -1.24 16 2 C 0.13 2.46 2.79 44.99 0.13 2.58 16 3 H 0.09 2.09 6.91 -2.39 -0.02 2.08 16 4 C 0.11 2.50 4.93 86.38 0.43 2.92 16 5 N -0.71 -20.15 5.39 -463.07 -2.49 -22.64 16 6 C 0.54 19.97 7.85 87.66 0.69 20.66 16 7 O -0.56 -24.28 15.86 -3.04 -0.05 -24.33 16 8 C -0.11 -4.68 6.16 71.24 0.44 -4.24 16 9 S -0.16 -8.51 18.55 -56.49 -1.05 -9.56 16 10 C -0.53 -32.01 10.04 67.95 0.68 -31.33 16 11 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 12 C 0.05 2.72 5.50 84.86 0.47 3.18 16 13 N -0.92 -56.84 13.97 21.65 0.30 -56.54 16 14 Si 0.92 45.57 27.74 68.60 1.90 47.48 16 15 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.23 -11.58 6.74 99.48 0.67 -10.91 16 18 N -0.60 -11.61 2.24 -826.66 -1.86 -13.46 16 19 C 0.06 0.81 7.73 127.77 0.99 1.80 16 20 C 0.58 14.54 7.36 86.62 0.64 15.18 16 21 O -0.60 -19.05 16.26 -4.09 -0.07 -19.11 16 22 C -0.26 -5.58 6.07 -19.04 -0.12 -5.70 16 23 C -0.19 -2.88 8.85 23.62 0.21 -2.67 16 24 C -0.02 -0.19 11.34 83.11 0.94 0.75 16 25 N -0.44 -5.78 3.09 -547.89 -1.69 -7.47 16 26 C 0.06 0.30 11.03 127.77 1.41 1.71 16 27 C 0.06 1.17 11.13 83.92 0.93 2.10 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.79 7.67 -2.39 -0.02 0.77 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.08 1.68 6.86 -2.39 -0.02 1.66 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 11.15 7.87 -92.70 -0.73 10.42 16 34 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 35 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 36 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.08 0.73 7.60 -2.38 -0.02 0.71 16 38 H 0.07 0.97 6.53 -2.39 -0.02 0.95 16 39 H 0.09 1.28 4.90 -2.39 -0.01 1.26 16 40 H 0.18 1.83 4.80 -2.91 -0.01 1.82 16 41 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 42 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 43 H 0.09 0.32 8.13 -2.38 -0.02 0.30 16 44 H 0.11 0.07 8.13 -2.39 -0.02 0.05 16 45 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -82.86 384.73 3.74 -79.12 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.25 Total: 20.79 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 8.49 Total: 5.73 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -5.74 Total: -100.11 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.11 Total: -43.44 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.48 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.56 kcal Total: -82.86 3.74 -79.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280430059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.247 kcal (2) G-P(sol) polarization free energy of solvation -82.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds