Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46847 * 2 1 4 4 C 1.53004 * 109.47425 * 120.00247 * 2 1 3 5 5 N 1.46496 * 109.47141 * 175.00333 * 4 2 1 6 6 C 1.34780 * 120.00051 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99534 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99979 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.46812 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99983 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00067 * 0.02562 * 10 9 8 12 12 C 1.38803 * 120.00140 * 180.02562 * 10 9 8 13 13 N 1.31630 * 119.99897 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99904 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47097 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47021 * 119.99533 * 14 12 10 17 17 H 1.48497 * 109.47086 * 239.99770 * 14 12 10 18 18 N 1.46500 * 109.47088 * 240.00307 * 2 1 3 19 19 C 1.46496 * 119.99934 * 299.99475 * 18 2 1 20 20 C 1.34780 * 120.00025 * 119.99964 * 18 2 1 21 21 O 1.21624 * 119.99900 * 1.32895 * 20 18 2 22 22 C 1.47265 * 119.99889 * 181.33542 * 20 18 2 23 23 C 1.46683 * 126.94191 * 343.53443 * 22 20 18 24 24 C 1.34488 * 106.33224 * 180.30162 * 23 22 20 25 25 N 1.36453 * 108.85540 * 359.75359 * 24 23 22 26 26 C 1.46493 * 124.85100 * 180.02562 * 25 24 23 27 27 C 1.34657 * 110.29634 * 0.02562 * 25 24 23 28 28 H 1.09004 * 109.46847 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47081 * 299.99782 * 1 2 3 30 30 H 1.08995 * 109.47266 * 59.99959 * 1 2 3 31 31 H 1.08998 * 109.46588 * 295.00293 * 4 2 1 32 32 H 1.08992 * 109.47058 * 54.99818 * 4 2 1 33 33 H 0.97005 * 120.00119 * 359.97438 * 5 4 2 34 34 H 1.08997 * 109.47208 * 299.99721 * 8 6 5 35 35 H 1.09002 * 109.47081 * 60.00420 * 8 6 5 36 36 H 0.96999 * 119.99906 * 180.02562 * 13 12 10 37 37 H 1.08995 * 109.47632 * 264.21007 * 19 18 2 38 38 H 1.08997 * 109.47092 * 24.21685 * 19 18 2 39 39 H 1.09001 * 109.47252 * 144.21088 * 19 18 2 40 40 H 1.07997 * 126.83906 * 0.02562 * 23 22 20 41 41 H 1.08001 * 125.57492 * 179.75928 * 24 23 22 42 42 H 1.08993 * 109.47571 * 270.00226 * 26 25 24 43 43 H 1.09004 * 109.47391 * 30.00285 * 26 25 24 44 44 H 1.09005 * 109.47361 * 149.99922 * 26 25 24 45 45 H 1.07999 * 125.80141 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4292 2.1906 7 8 3.5700 -1.8842 3.1393 8 6 5.6750 -1.5377 2.1299 9 16 6.2783 -2.3908 3.6078 10 6 8.0101 -2.3778 3.2830 11 1 8.3864 -1.9246 2.3778 12 6 8.8908 -2.9500 4.1906 13 7 8.4322 -3.5020 5.2941 14 14 10.7266 -2.9368 3.8459 15 1 10.9817 -2.2616 2.5481 16 1 11.4287 -2.2058 4.9311 17 1 11.2287 -4.3330 3.7841 18 7 2.0183 -0.6905 -1.1962 19 6 1.6645 -2.0931 -1.4280 20 6 2.7932 -0.0355 -2.0834 21 8 3.1069 1.1216 -1.8788 22 6 3.2597 -0.7208 -3.3005 23 6 3.2700 -2.1663 -3.5493 24 6 3.7837 -2.3345 -4.7808 25 7 4.0822 -1.1106 -5.3050 26 6 4.6602 -0.8868 -6.6323 27 6 3.7694 -0.1379 -4.4279 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2951 33 1 3.9824 -0.4627 0.4315 34 1 5.9630 -2.1005 1.2420 35 1 6.1099 -0.5392 2.0843 36 1 9.0477 -3.9016 5.9284 37 1 2.4658 -2.7352 -1.0627 38 1 0.7411 -2.3272 -0.8983 39 1 1.5231 -2.2605 -2.4958 40 1 2.9361 -2.9417 -2.8757 41 1 3.9352 -3.2832 -5.2742 42 1 5.7478 -0.8896 -6.5602 43 1 4.3388 -1.6801 -7.3071 44 1 4.3241 0.0760 -7.0174 45 1 3.9026 0.9221 -4.5860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280430060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -5.524499 kcal Electronic energy + Delta-G solvation = -26823.794356 eV Core-core repulsion = 22969.397881 eV Total energy + Delta-G solvation = -3854.396475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.59933 -39.95934 -38.78996 -36.57994 -34.22093 -33.16399 -32.38162 -31.63057 -29.50146 -29.29923 -27.36874 -26.91203 -25.87049 -25.30316 -23.22909 -21.01087 -20.42034 -20.14625 -19.29054 -17.77979 -17.63975 -16.80138 -16.37082 -16.14728 -15.79249 -15.50998 -15.10797 -14.92511 -14.76200 -14.40963 -13.96407 -13.95848 -13.52513 -13.40065 -13.27845 -13.03544 -12.97624 -12.82317 -12.66457 -12.57315 -12.41700 -12.33467 -12.02864 -11.72989 -11.56353 -11.07217 -11.03225 -10.96624 -10.71354 -9.95738 -9.75644 -9.32538 -9.03188 -8.89233 -8.88683 -8.76759 -8.55660 -8.17195 -6.44070 -6.17269 -3.86839 1.55800 2.14704 2.45267 2.89697 3.13259 3.20253 3.24769 3.31810 3.35124 3.38404 3.82741 4.25069 4.28507 4.49499 4.60354 4.65880 4.66597 4.81751 4.92494 4.94596 4.97475 5.06088 5.17877 5.18439 5.25158 5.36240 5.40791 5.46284 5.58902 5.60875 5.65329 5.70702 5.79892 5.83846 5.97472 6.00413 6.24007 6.37658 6.45842 6.72154 6.74187 6.88701 7.28274 7.64970 7.82383 8.15386 8.40621 8.71435 9.28296 10.90291 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010138 B = 0.002854 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.109150 B = 9809.489280 C =11883.700687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.108 0.892 4 C 0.113 3.887 5 N -0.733 5.733 6 C 0.533 3.467 7 O -0.521 6.521 8 C -0.152 4.152 9 S -0.060 6.060 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.604 5.604 19 C 0.066 3.934 20 C 0.592 3.408 21 O -0.552 6.552 22 C -0.232 4.232 23 C -0.177 4.177 24 C -0.019 4.019 25 N -0.447 5.447 26 C 0.068 3.932 27 C 0.074 3.926 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.267 0.733 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.193 4.592 -25.782 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.126 0.874 4 C -0.012 4.012 5 N -0.388 5.388 6 C 0.319 3.681 7 O -0.396 6.396 8 C -0.303 4.303 9 S 0.166 5.834 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.337 5.337 19 C -0.077 4.077 20 C 0.383 3.617 21 O -0.432 6.432 22 C -0.242 4.242 23 C -0.200 4.200 24 C -0.145 4.145 25 N -0.123 5.123 26 C -0.074 4.074 27 C -0.062 4.062 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.176 0.824 41 H 0.184 0.816 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.867 4.360 -24.249 29.305 hybrid contribution 2.156 0.526 -1.720 2.807 sum -13.711 4.885 -25.969 29.770 Atomic orbital electron populations 1.22058 0.93791 1.02775 1.02934 1.21376 0.94749 0.98442 0.83397 0.87354 1.21643 0.81352 1.01048 0.97172 1.45923 1.06833 1.61594 1.24421 1.20271 0.89452 0.76778 0.81633 1.90689 1.69887 1.46380 1.32601 1.23521 0.93738 1.05630 1.07422 1.85339 1.04522 1.73083 1.20418 1.22923 0.91606 1.43979 1.09636 0.90919 1.24990 0.99549 0.94611 0.94477 1.70032 1.35234 1.35689 1.09426 0.86120 0.83069 0.77934 0.78404 1.19628 1.20573 1.20595 1.47628 1.50995 1.12652 1.22405 1.22348 1.00941 0.81427 1.02958 1.17467 0.77098 0.85173 0.81984 1.90778 1.58059 1.17250 1.77080 1.20243 1.14224 0.93724 0.96049 1.22651 1.05829 0.94799 0.96765 1.21862 1.07377 0.88598 0.96711 1.43648 1.48114 1.06266 1.14233 1.22133 0.99680 1.03942 0.81603 1.21752 1.00588 0.94365 0.89489 0.91858 0.90863 0.91798 0.90550 0.91366 0.76704 0.89389 0.89308 0.92296 0.92127 0.91155 0.89450 0.82357 0.81602 0.90488 0.89571 0.89629 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.18 37.16 0.34 -0.87 16 2 C 0.12 1.29 2.79 -67.93 -0.19 1.10 16 3 H 0.11 1.30 6.90 -51.93 -0.36 0.94 16 4 C 0.11 1.42 4.97 -4.04 -0.02 1.40 16 5 N -0.73 -11.28 5.39 -60.30 -0.32 -11.61 16 6 C 0.53 10.67 7.85 -10.98 -0.09 10.58 16 7 O -0.52 -12.26 15.86 5.56 0.09 -12.17 16 8 C -0.15 -3.31 6.16 36.01 0.22 -3.09 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.64 9.50 30.94 0.29 -15.35 16 11 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.65 13.22 55.49 0.73 -25.91 16 14 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 N -0.60 -6.32 2.24 -175.26 -0.39 -6.71 16 19 C 0.07 0.53 7.89 59.84 0.47 1.01 16 20 C 0.59 7.44 7.36 -12.59 -0.09 7.35 16 21 O -0.55 -8.63 16.28 5.26 0.09 -8.55 16 22 C -0.23 -2.52 5.97 -103.35 -0.62 -3.14 16 23 C -0.18 -1.56 8.75 -37.50 -0.33 -1.89 16 24 C -0.02 -0.14 11.34 -16.82 -0.19 -0.33 16 25 N -0.45 -3.21 3.09 -124.53 -0.38 -3.60 16 26 C 0.07 0.22 11.03 59.84 0.66 0.88 16 27 C 0.07 0.68 11.16 -16.84 -0.19 0.50 16 28 H 0.06 0.43 6.67 -51.93 -0.35 0.09 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 33 H 0.40 5.87 7.87 -40.82 -0.32 5.55 16 34 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 35 H 0.09 1.84 8.14 -51.91 -0.42 1.41 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.06 0.54 7.49 -51.93 -0.39 0.15 16 38 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 39 H 0.09 0.61 5.08 -51.93 -0.26 0.35 16 40 H 0.16 1.18 5.11 -52.49 -0.27 0.91 16 41 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 0.14 8.13 -51.93 -0.42 -0.28 16 44 H 0.08 0.17 8.13 -51.93 -0.42 -0.25 16 45 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -38.36 387.71 -7.87 -46.23 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.46 Total: 3.35 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 0.18 Total: 0.17 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.37 Total: -47.83 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.17 Total: -20.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.36 -7.87 -46.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280430060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.702 kcal (2) G-P(sol) polarization free energy of solvation -38.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds