Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46847 * 2 1 4 4 C 1.53004 * 109.47425 * 120.00247 * 2 1 3 5 5 N 1.46496 * 109.47141 * 175.00333 * 4 2 1 6 6 C 1.34780 * 120.00051 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99534 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99979 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.46812 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99983 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00067 * 0.02562 * 10 9 8 12 12 C 1.38803 * 120.00140 * 180.02562 * 10 9 8 13 13 N 1.31630 * 119.99897 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99904 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47097 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47021 * 119.99533 * 14 12 10 17 17 H 1.48497 * 109.47086 * 239.99770 * 14 12 10 18 18 N 1.46500 * 109.47088 * 240.00307 * 2 1 3 19 19 C 1.46496 * 119.99934 * 299.99475 * 18 2 1 20 20 C 1.34780 * 120.00025 * 119.99964 * 18 2 1 21 21 O 1.21624 * 119.99900 * 1.32895 * 20 18 2 22 22 C 1.47265 * 119.99889 * 181.33542 * 20 18 2 23 23 C 1.46683 * 126.94191 * 343.53443 * 22 20 18 24 24 C 1.34488 * 106.33224 * 180.30162 * 23 22 20 25 25 N 1.36453 * 108.85540 * 359.75359 * 24 23 22 26 26 C 1.46493 * 124.85100 * 180.02562 * 25 24 23 27 27 C 1.34657 * 110.29634 * 0.02562 * 25 24 23 28 28 H 1.09004 * 109.46847 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47081 * 299.99782 * 1 2 3 30 30 H 1.08995 * 109.47266 * 59.99959 * 1 2 3 31 31 H 1.08998 * 109.46588 * 295.00293 * 4 2 1 32 32 H 1.08992 * 109.47058 * 54.99818 * 4 2 1 33 33 H 0.97005 * 120.00119 * 359.97438 * 5 4 2 34 34 H 1.08997 * 109.47208 * 299.99721 * 8 6 5 35 35 H 1.09002 * 109.47081 * 60.00420 * 8 6 5 36 36 H 0.96999 * 119.99906 * 180.02562 * 13 12 10 37 37 H 1.08995 * 109.47632 * 264.21007 * 19 18 2 38 38 H 1.08997 * 109.47092 * 24.21685 * 19 18 2 39 39 H 1.09001 * 109.47252 * 144.21088 * 19 18 2 40 40 H 1.07997 * 126.83906 * 0.02562 * 23 22 20 41 41 H 1.08001 * 125.57492 * 179.75928 * 24 23 22 42 42 H 1.08993 * 109.47571 * 270.00226 * 26 25 24 43 43 H 1.09004 * 109.47391 * 30.00285 * 26 25 24 44 44 H 1.09005 * 109.47361 * 149.99922 * 26 25 24 45 45 H 1.07999 * 125.80141 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4292 2.1906 7 8 3.5700 -1.8842 3.1393 8 6 5.6750 -1.5377 2.1299 9 16 6.2783 -2.3908 3.6078 10 6 8.0101 -2.3778 3.2830 11 1 8.3864 -1.9246 2.3778 12 6 8.8908 -2.9500 4.1906 13 7 8.4322 -3.5020 5.2941 14 14 10.7266 -2.9368 3.8459 15 1 10.9817 -2.2616 2.5481 16 1 11.4287 -2.2058 4.9311 17 1 11.2287 -4.3330 3.7841 18 7 2.0183 -0.6905 -1.1962 19 6 1.6645 -2.0931 -1.4280 20 6 2.7932 -0.0355 -2.0834 21 8 3.1069 1.1216 -1.8788 22 6 3.2597 -0.7208 -3.3005 23 6 3.2700 -2.1663 -3.5493 24 6 3.7837 -2.3345 -4.7808 25 7 4.0822 -1.1106 -5.3050 26 6 4.6602 -0.8868 -6.6323 27 6 3.7694 -0.1379 -4.4279 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2951 33 1 3.9824 -0.4627 0.4315 34 1 5.9630 -2.1005 1.2420 35 1 6.1099 -0.5392 2.0843 36 1 9.0477 -3.9016 5.9284 37 1 2.4658 -2.7352 -1.0627 38 1 0.7411 -2.3272 -0.8983 39 1 1.5231 -2.2605 -2.4958 40 1 2.9361 -2.9417 -2.8757 41 1 3.9352 -3.2832 -5.2742 42 1 5.7478 -0.8896 -6.5602 43 1 4.3388 -1.6801 -7.3071 44 1 4.3241 0.0760 -7.0174 45 1 3.9026 0.9221 -4.5860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280430060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -31.657229 kcal Electronic energy + Delta-G solvation = -26824.927556 eV Core-core repulsion = 22969.397881 eV Total energy + Delta-G solvation = -3855.529675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23417 -41.01052 -40.16583 -37.61695 -35.37243 -34.60023 -33.95229 -32.48664 -30.87381 -30.12909 -28.02554 -27.75322 -27.45682 -26.76011 -23.99932 -21.76055 -21.68919 -21.10362 -20.07944 -19.78111 -18.30850 -17.87607 -17.69695 -17.44759 -16.89605 -16.60417 -16.44835 -16.26037 -15.86880 -15.79492 -15.03585 -14.86491 -14.76046 -14.52288 -14.22805 -14.10668 -13.98102 -13.88956 -13.44306 -13.32277 -13.17799 -13.13886 -13.03876 -13.01611 -12.91523 -12.82281 -12.58300 -12.28726 -11.88808 -11.72557 -11.16924 -11.01322 -10.90143 -10.31292 -10.15901 -9.75587 -9.48638 -9.22097 -8.68321 -8.36190 -6.14334 0.79038 1.24600 1.40385 1.44627 1.54701 1.56829 1.57114 1.86973 2.16909 2.25459 2.32235 2.51349 2.97709 3.29554 3.59982 3.85034 3.96320 4.01085 4.08523 4.10789 4.21357 4.24396 4.29042 4.32422 4.45295 4.46732 4.59364 4.60587 4.67251 4.71311 4.75123 4.81757 4.90831 5.01976 5.05769 5.12402 5.25917 5.38635 5.40537 5.61238 5.80216 6.10621 6.18714 6.34583 6.38001 6.47145 7.04998 7.15983 7.25342 8.73433 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010138 B = 0.002854 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.109150 B = 9809.489280 C =11883.700687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.130 3.870 3 H 0.091 0.909 4 C 0.112 3.888 5 N -0.712 5.712 6 C 0.537 3.463 7 O -0.560 6.560 8 C -0.131 4.131 9 S -0.139 6.139 10 C -0.549 4.549 11 H 0.079 0.921 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 1.000 3.000 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.270 1.270 18 N -0.601 5.601 19 C 0.064 3.936 20 C 0.585 3.415 21 O -0.595 6.595 22 C -0.263 4.263 23 C -0.192 4.192 24 C -0.014 4.014 25 N -0.443 5.443 26 C 0.061 3.939 27 C 0.065 3.935 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.404 0.596 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.272 0.728 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.168 0.832 41 H 0.197 0.803 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.914 4.196 -28.428 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 H 0.109 0.891 4 C -0.012 4.012 5 N -0.365 5.365 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.282 4.282 9 S 0.088 5.912 10 C -0.697 4.697 11 H 0.097 0.903 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.821 3.179 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.196 1.196 18 N -0.333 5.333 19 C -0.078 4.078 20 C 0.377 3.623 21 O -0.477 6.477 22 C -0.273 4.273 23 C -0.215 4.215 24 C -0.141 4.141 25 N -0.118 5.118 26 C -0.079 4.079 27 C -0.072 4.072 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.240 0.760 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.185 0.815 41 H 0.214 0.786 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.622 3.957 -26.949 31.400 hybrid contribution 1.991 0.674 -1.015 2.334 sum -13.631 4.631 -27.964 31.452 Atomic orbital electron populations 1.22014 0.91242 1.03910 1.03592 1.21309 0.96527 0.97091 0.82422 0.89089 1.21864 0.79154 1.01760 0.98429 1.45757 1.08164 1.59552 1.23004 1.19946 0.88723 0.77041 0.82031 1.90678 1.70267 1.48520 1.34315 1.23364 0.95110 1.05380 1.04390 1.85450 1.05705 1.74787 1.25292 1.23226 0.91801 1.44477 1.10148 0.90327 1.26123 1.05236 0.93704 0.93959 1.70180 1.37379 1.36481 1.10582 0.84898 0.75798 0.78441 0.78751 1.18358 1.19781 1.19567 1.47704 1.50269 1.13466 1.21815 1.22491 1.01351 0.79763 1.04195 1.17841 0.76865 0.84826 0.82718 1.90742 1.59836 1.19028 1.78142 1.20325 1.16009 0.94971 0.96043 1.22817 1.06879 0.93992 0.97844 1.22371 1.05810 0.89648 0.96297 1.43936 1.47006 1.05751 1.15062 1.22430 0.99929 1.05567 0.80023 1.21905 1.00496 0.95075 0.89771 0.90457 0.89812 0.91553 0.90590 0.90697 0.76037 0.87800 0.88145 0.91879 0.92822 0.89479 0.88112 0.81484 0.78629 0.89927 0.87404 0.88435 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.18 71.98 0.66 -1.39 16 2 C 0.13 2.62 2.79 44.99 0.13 2.74 16 3 H 0.09 2.20 6.90 -2.38 -0.02 2.19 16 4 C 0.11 2.74 4.97 86.38 0.43 3.17 16 5 N -0.71 -21.61 5.39 -463.07 -2.50 -24.10 16 6 C 0.54 21.54 7.85 87.66 0.69 22.23 16 7 O -0.56 -26.76 15.86 -3.03 -0.05 -26.80 16 8 C -0.13 -5.71 6.16 71.24 0.44 -5.27 16 9 S -0.14 -8.02 20.57 -56.49 -1.16 -9.18 16 10 C -0.55 -32.42 9.50 67.96 0.65 -31.77 16 11 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 12 C 0.01 0.85 5.49 84.86 0.47 1.32 16 13 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 14 Si 1.00 44.60 29.55 68.60 2.03 46.62 16 15 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 N -0.60 -12.15 2.24 -826.66 -1.85 -14.01 16 19 C 0.06 0.94 7.89 127.77 1.01 1.95 16 20 C 0.58 14.77 7.36 86.62 0.64 15.41 16 21 O -0.59 -19.11 16.28 -4.11 -0.07 -19.18 16 22 C -0.26 -5.60 5.97 -19.04 -0.11 -5.71 16 23 C -0.19 -3.12 8.75 23.62 0.21 -2.91 16 24 C -0.01 -0.18 11.34 83.12 0.94 0.77 16 25 N -0.44 -5.49 3.09 -547.91 -1.69 -7.18 16 26 C 0.06 0.24 11.03 127.77 1.41 1.65 16 27 C 0.06 1.16 11.16 83.92 0.94 2.10 16 28 H 0.08 0.86 6.67 -2.38 -0.02 0.85 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.78 7.84 -2.39 -0.02 1.77 16 33 H 0.40 11.73 7.87 -92.70 -0.73 11.00 16 34 H 0.10 4.17 8.14 -2.40 -0.02 4.15 16 35 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 36 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.05 0.89 7.49 -2.39 -0.02 0.87 16 38 H 0.09 0.99 6.44 -2.39 -0.02 0.97 16 39 H 0.10 1.25 5.08 -2.39 -0.01 1.24 16 40 H 0.17 2.23 5.11 -2.91 -0.01 2.22 16 41 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.11 -0.02 8.13 -2.39 -0.02 -0.03 16 44 H 0.10 0.17 8.13 -2.38 -0.02 0.15 16 45 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -85.27 387.71 3.76 -81.50 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.28 Total: 24.43 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 8.48 Total: 4.26 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -5.75 Total: -101.66 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.11 Total: -45.98 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -85.27 3.76 -81.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280430060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.847 kcal (2) G-P(sol) polarization free energy of solvation -85.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds