Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46915 * 2 1 4 4 C 1.52994 * 109.47060 * 240.00284 * 2 1 3 5 5 N 1.46502 * 109.47035 * 185.00312 * 4 2 1 6 6 C 1.34777 * 119.99928 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99930 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99970 * 179.97438 * 6 5 4 9 9 S 1.80999 * 109.46912 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99867 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99595 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00276 * 180.02562 * 10 9 8 13 13 N 1.31636 * 119.99634 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00258 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47337 * 89.99540 * 14 12 10 16 16 H 1.48497 * 109.47074 * 209.99655 * 14 12 10 17 17 H 1.48496 * 109.47019 * 329.99711 * 14 12 10 18 18 N 1.46494 * 109.47108 * 119.99831 * 2 1 3 19 19 C 1.46500 * 120.00370 * 60.00049 * 18 2 1 20 20 C 1.34777 * 120.00204 * 240.00102 * 18 2 1 21 21 O 1.21702 * 120.00191 * 5.67401 * 20 18 2 22 22 C 1.46678 * 120.00227 * 185.68096 * 20 18 2 23 23 C 1.37868 * 126.23170 * 7.09585 * 22 20 18 24 24 C 1.39846 * 107.08221 * 179.85060 * 23 22 20 25 25 C 1.35452 * 107.86352 * 0.41703 * 24 23 22 26 26 N 1.35536 * 108.87376 * 359.74264 * 25 24 23 27 27 C 1.46494 * 125.67606 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.46869 * 300.00330 * 1 2 3 29 29 H 1.09000 * 109.47066 * 59.99809 * 1 2 3 30 30 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46896 * 304.99732 * 4 2 1 32 32 H 1.08998 * 109.47507 * 64.99639 * 4 2 1 33 33 H 0.96997 * 120.00010 * 359.97438 * 5 4 2 34 34 H 1.09006 * 109.46676 * 299.99000 * 8 6 5 35 35 H 1.08998 * 109.47446 * 59.99361 * 8 6 5 36 36 H 0.97002 * 119.99557 * 180.02562 * 13 12 10 37 37 H 1.09006 * 109.47176 * 95.72953 * 19 18 2 38 38 H 1.08995 * 109.47621 * 215.73396 * 19 18 2 39 39 H 1.09007 * 109.46655 * 335.73407 * 19 18 2 40 40 H 1.07994 * 126.45979 * 359.97102 * 23 22 20 41 41 H 1.08000 * 126.06388 * 180.14160 * 24 23 22 42 42 H 1.07999 * 125.55837 * 179.77394 * 25 24 23 43 43 H 1.08994 * 109.47608 * 264.28850 * 27 26 25 44 44 H 1.09000 * 109.47307 * 24.29401 * 27 26 25 45 45 H 1.09006 * 109.47086 * 144.29046 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1731 -1.4282 -2.1912 7 8 3.5699 -1.8831 -3.1400 8 6 5.6751 -1.5359 -2.1311 9 16 6.2783 -2.3892 -3.6089 10 6 8.0102 -2.3751 -3.2848 11 1 8.3865 -1.9213 -2.3798 12 6 8.8910 -2.9462 -4.1929 13 7 8.4323 -3.4988 -5.2961 14 14 10.7269 -2.9319 -3.8489 15 1 11.0991 -4.1566 -3.0960 16 1 11.4709 -2.8953 -5.1336 17 1 11.0703 -1.7323 -3.0437 18 7 2.0183 -0.6905 1.1961 19 6 1.6645 -2.0931 1.4281 20 6 2.7932 -0.0356 2.0833 21 8 3.0024 1.1554 1.9458 22 6 3.3844 -0.7581 3.2146 23 6 3.3480 -2.1210 3.4197 24 6 4.0341 -2.3755 4.6114 25 6 4.4598 -1.1891 5.1073 26 7 4.0715 -0.1983 4.2679 27 6 4.3381 1.2304 4.4514 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6053 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4622 -0.4319 34 1 6.1093 -0.5372 -2.0851 35 1 5.9638 -2.0989 -1.2435 36 1 9.0478 -3.8982 -5.9306 37 1 2.4654 -2.7353 1.0617 38 1 1.5241 -2.2607 2.4959 39 1 0.7405 -2.3269 0.8990 40 1 2.8799 -2.8540 2.7796 41 1 4.1921 -3.3454 5.0594 42 1 5.0181 -1.0547 6.0220 43 1 3.4792 1.7019 4.9290 44 1 5.2190 1.3578 5.0806 45 1 4.5145 1.6947 3.4811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280430739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -0.168186 kcal Electronic energy + Delta-G solvation = -27196.306033 eV Core-core repulsion = 23342.141825 eV Total energy + Delta-G solvation = -3854.164208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76742 -39.98653 -38.86377 -36.81751 -34.40594 -33.11730 -32.40604 -32.09089 -29.49514 -29.10955 -27.77880 -26.51848 -25.96620 -25.35003 -23.42494 -21.15054 -20.53395 -20.23737 -19.48118 -17.82750 -17.50611 -16.98282 -16.43045 -16.22115 -15.95567 -15.53862 -15.04368 -14.95302 -14.78262 -14.44028 -14.02166 -13.93985 -13.53222 -13.47381 -13.35485 -13.17080 -12.97467 -12.89941 -12.69253 -12.57876 -12.47881 -12.31843 -12.13264 -11.75962 -11.45043 -11.17774 -11.04329 -11.00092 -10.74229 -10.17094 -9.79634 -9.40155 -9.11217 -9.04876 -8.92116 -8.86497 -8.48075 -8.21399 -6.47342 -6.19600 -3.89734 1.20372 2.23991 2.49282 2.90632 3.07458 3.09372 3.13023 3.24005 3.29602 3.34587 3.74952 4.21464 4.22750 4.50939 4.54201 4.72004 4.77409 4.78568 4.92487 4.94300 5.12793 5.14788 5.15566 5.18139 5.21625 5.29389 5.33893 5.36513 5.49102 5.53408 5.68092 5.74544 5.79224 5.85830 5.92080 5.93322 6.16616 6.18581 6.51133 6.62931 6.71995 6.91756 7.02868 7.62012 7.71913 7.85032 8.37705 8.63377 9.25864 10.87866 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.002964 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.946680 B = 9444.256814 C =11139.744668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 H 0.110 0.890 4 C 0.112 3.888 5 N -0.735 5.735 6 C 0.533 3.467 7 O -0.518 6.518 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.596 5.596 19 C 0.058 3.942 20 C 0.589 3.411 21 O -0.551 6.551 22 C -0.054 4.054 23 C -0.154 4.154 24 C -0.210 4.210 25 C 0.015 3.985 26 N -0.412 5.412 27 C 0.067 3.933 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.164 0.836 41 H 0.143 0.857 42 H 0.168 0.832 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.249 6.370 22.600 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.128 0.872 4 C -0.013 4.013 5 N -0.389 5.389 6 C 0.319 3.681 7 O -0.393 6.393 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.329 5.329 19 C -0.084 4.084 20 C 0.379 3.621 21 O -0.431 6.431 22 C -0.167 4.167 23 C -0.180 4.180 24 C -0.233 4.233 25 C -0.120 4.120 26 N -0.085 5.085 27 C -0.074 4.074 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.181 0.819 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.067 6.551 20.771 27.064 hybrid contribution 2.197 0.593 1.807 2.906 sum -13.870 7.144 22.577 27.443 Atomic orbital electron populations 1.22065 0.93468 1.02960 1.03125 1.21431 0.95042 0.98319 0.82887 0.87246 1.21666 0.81382 1.01223 0.97033 1.45923 1.06773 1.61813 1.24428 1.20286 0.89483 0.76734 0.81589 1.90696 1.69871 1.46191 1.32520 1.23525 0.93633 1.05617 1.07580 1.85344 1.04536 1.73037 1.20287 1.22876 0.91575 1.44219 1.09660 0.90981 1.24984 0.99556 0.94568 0.94433 1.70023 1.35383 1.35527 1.09402 0.86173 0.82887 0.78620 0.77862 1.20254 1.20744 1.19714 1.47476 1.50207 1.12879 1.22311 1.22541 1.01525 0.81193 1.03170 1.17048 0.77992 0.85807 0.81224 1.90788 1.61761 1.14667 1.75852 1.19930 1.09516 0.92874 0.94419 1.22268 1.03118 0.93564 0.99079 1.20928 1.06061 0.97625 0.98733 1.22072 1.04912 0.87418 0.97609 1.43849 1.40089 1.07393 1.17120 1.22253 1.02145 0.77758 1.05277 0.91706 0.90655 0.91688 0.91141 0.90291 0.76932 0.89364 0.89360 0.92211 0.91419 0.89187 0.90561 0.81886 0.83928 0.81494 0.90770 0.89816 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.18 37.16 0.34 -0.74 16 2 C 0.13 1.18 2.79 -67.94 -0.19 0.99 16 3 H 0.11 1.18 6.91 -51.93 -0.36 0.82 16 4 C 0.11 1.30 4.97 -4.04 -0.02 1.28 16 5 N -0.73 -10.59 5.39 -60.29 -0.32 -10.92 16 6 C 0.53 10.28 7.85 -10.98 -0.09 10.20 16 7 O -0.52 -11.84 15.86 5.56 0.09 -11.76 16 8 C -0.15 -3.23 6.16 36.01 0.22 -3.01 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.54 -15.53 9.50 30.94 0.29 -15.24 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 14 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 18 N -0.60 -5.66 2.24 -175.48 -0.39 -6.05 16 19 C 0.06 0.42 7.77 59.85 0.47 0.89 16 20 C 0.59 6.87 7.33 -12.85 -0.09 6.77 16 21 O -0.55 -7.67 14.12 5.19 0.07 -7.60 16 22 C -0.05 -0.59 6.73 -81.98 -0.55 -1.15 16 23 C -0.15 -1.47 8.74 -39.12 -0.34 -1.81 16 24 C -0.21 -1.84 10.81 -39.97 -0.43 -2.27 16 25 C 0.02 0.13 11.37 -16.91 -0.19 -0.06 16 26 N -0.41 -4.06 3.16 -120.24 -0.38 -4.44 16 27 C 0.07 0.52 10.51 59.84 0.63 1.15 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.39 6.67 -51.93 -0.35 0.04 16 31 H 0.07 0.81 7.84 -51.92 -0.41 0.41 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 5.39 7.87 -40.82 -0.32 5.07 16 34 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 35 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 0.54 7.38 -51.93 -0.38 0.16 16 38 H 0.09 0.57 5.28 -51.93 -0.27 0.29 16 39 H 0.08 0.44 6.44 -51.92 -0.33 0.11 16 40 H 0.16 1.24 4.38 -52.49 -0.23 1.01 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 45 H 0.10 0.99 6.51 -51.93 -0.34 0.65 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -36.99 383.12 -8.06 -45.05 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.34 Total: 3.75 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.05 Total: -0.97 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.37 Total: -47.09 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.16 Total: -19.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.99 -8.06 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280430739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.882 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds