Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46915 * 2 1 4 4 C 1.52994 * 109.47060 * 240.00284 * 2 1 3 5 5 N 1.46502 * 109.47035 * 185.00312 * 4 2 1 6 6 C 1.34777 * 119.99928 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99930 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99970 * 179.97438 * 6 5 4 9 9 S 1.80999 * 109.46912 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99867 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99595 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00276 * 180.02562 * 10 9 8 13 13 N 1.31636 * 119.99634 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00258 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47337 * 89.99540 * 14 12 10 16 16 H 1.48497 * 109.47074 * 209.99655 * 14 12 10 17 17 H 1.48496 * 109.47019 * 329.99711 * 14 12 10 18 18 N 1.46494 * 109.47108 * 119.99831 * 2 1 3 19 19 C 1.46500 * 120.00370 * 60.00049 * 18 2 1 20 20 C 1.34777 * 120.00204 * 240.00102 * 18 2 1 21 21 O 1.21702 * 120.00191 * 5.67401 * 20 18 2 22 22 C 1.46678 * 120.00227 * 185.68096 * 20 18 2 23 23 C 1.37868 * 126.23170 * 7.09585 * 22 20 18 24 24 C 1.39846 * 107.08221 * 179.85060 * 23 22 20 25 25 C 1.35452 * 107.86352 * 0.41703 * 24 23 22 26 26 N 1.35536 * 108.87376 * 359.74264 * 25 24 23 27 27 C 1.46494 * 125.67606 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.46869 * 300.00330 * 1 2 3 29 29 H 1.09000 * 109.47066 * 59.99809 * 1 2 3 30 30 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46896 * 304.99732 * 4 2 1 32 32 H 1.08998 * 109.47507 * 64.99639 * 4 2 1 33 33 H 0.96997 * 120.00010 * 359.97438 * 5 4 2 34 34 H 1.09006 * 109.46676 * 299.99000 * 8 6 5 35 35 H 1.08998 * 109.47446 * 59.99361 * 8 6 5 36 36 H 0.97002 * 119.99557 * 180.02562 * 13 12 10 37 37 H 1.09006 * 109.47176 * 95.72953 * 19 18 2 38 38 H 1.08995 * 109.47621 * 215.73396 * 19 18 2 39 39 H 1.09007 * 109.46655 * 335.73407 * 19 18 2 40 40 H 1.07994 * 126.45979 * 359.97102 * 23 22 20 41 41 H 1.08000 * 126.06388 * 180.14160 * 24 23 22 42 42 H 1.07999 * 125.55837 * 179.77394 * 25 24 23 43 43 H 1.08994 * 109.47608 * 264.28850 * 27 26 25 44 44 H 1.09000 * 109.47307 * 24.29401 * 27 26 25 45 45 H 1.09006 * 109.47086 * 144.29046 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1731 -1.4282 -2.1912 7 8 3.5699 -1.8831 -3.1400 8 6 5.6751 -1.5359 -2.1311 9 16 6.2783 -2.3892 -3.6089 10 6 8.0102 -2.3751 -3.2848 11 1 8.3865 -1.9213 -2.3798 12 6 8.8910 -2.9462 -4.1929 13 7 8.4323 -3.4988 -5.2961 14 14 10.7269 -2.9319 -3.8489 15 1 11.0991 -4.1566 -3.0960 16 1 11.4709 -2.8953 -5.1336 17 1 11.0703 -1.7323 -3.0437 18 7 2.0183 -0.6905 1.1961 19 6 1.6645 -2.0931 1.4281 20 6 2.7932 -0.0356 2.0833 21 8 3.0024 1.1554 1.9458 22 6 3.3844 -0.7581 3.2146 23 6 3.3480 -2.1210 3.4197 24 6 4.0341 -2.3755 4.6114 25 6 4.4598 -1.1891 5.1073 26 7 4.0715 -0.1983 4.2679 27 6 4.3381 1.2304 4.4514 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6053 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4622 -0.4319 34 1 6.1093 -0.5372 -2.0851 35 1 5.9638 -2.0989 -1.2435 36 1 9.0478 -3.8982 -5.9306 37 1 2.4654 -2.7353 1.0617 38 1 1.5241 -2.2607 2.4959 39 1 0.7405 -2.3269 0.8990 40 1 2.8799 -2.8540 2.7796 41 1 4.1921 -3.3454 5.0594 42 1 5.0181 -1.0547 6.0220 43 1 3.4792 1.7019 4.9290 44 1 5.2190 1.3578 5.0806 45 1 4.5145 1.6947 3.4811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280430739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -25.099698 kcal Electronic energy + Delta-G solvation = -27197.387144 eV Core-core repulsion = 23342.141825 eV Total energy + Delta-G solvation = -3855.245319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.46823 -40.99149 -40.15328 -37.75422 -35.51252 -34.60092 -33.94048 -32.93986 -30.97393 -29.85510 -28.44168 -27.75555 -27.14850 -26.80036 -24.20971 -21.84944 -21.78016 -21.24248 -20.22594 -19.80712 -18.22715 -17.91729 -17.78005 -17.44020 -16.89497 -16.78905 -16.61471 -16.25639 -15.82002 -15.74204 -15.17679 -14.84352 -14.74177 -14.53703 -14.27706 -14.10069 -14.01824 -13.93842 -13.66216 -13.46549 -13.23346 -13.18605 -13.07474 -12.96450 -12.89931 -12.87257 -12.60327 -12.14635 -11.87921 -11.74605 -11.15687 -11.02821 -11.01690 -10.31916 -10.18218 -9.88444 -9.62008 -9.16744 -8.68396 -8.36292 -6.14481 0.45567 1.24104 1.41252 1.44156 1.53271 1.55690 1.57886 1.83025 2.18179 2.25619 2.30076 2.32448 2.97693 3.28853 3.46428 3.67089 3.90234 3.98021 4.03685 4.16835 4.18333 4.22047 4.23041 4.36361 4.44407 4.49122 4.54402 4.56858 4.62081 4.65002 4.72661 4.78319 4.87600 4.98778 5.16019 5.23887 5.27344 5.34579 5.39888 5.48066 5.84336 6.03346 6.18069 6.23497 6.33349 6.35633 7.03084 7.04924 7.14526 8.72974 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.002964 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.946680 B = 9444.256814 C =11139.744668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.094 0.906 4 C 0.111 3.889 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.558 6.558 8 C -0.132 4.132 9 S -0.138 6.138 10 C -0.551 4.551 11 H 0.079 0.921 12 C 0.016 3.984 13 N -0.909 5.909 14 Si 0.998 3.002 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.261 1.261 18 N -0.593 5.593 19 C 0.054 3.946 20 C 0.582 3.418 21 O -0.584 6.584 22 C -0.088 4.088 23 C -0.154 4.154 24 C -0.226 4.226 25 C 0.021 3.979 26 N -0.422 5.422 27 C 0.066 3.934 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.403 0.597 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.272 0.728 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.199 0.801 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.969 6.301 24.970 29.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.031 3.969 3 H 0.112 0.888 4 C -0.013 4.013 5 N -0.365 5.365 6 C 0.323 3.677 7 O -0.436 6.436 8 C -0.283 4.283 9 S 0.089 5.911 10 C -0.698 4.698 11 H 0.097 0.903 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.819 3.181 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.185 1.185 18 N -0.324 5.324 19 C -0.087 4.087 20 C 0.374 3.626 21 O -0.466 6.466 22 C -0.201 4.201 23 C -0.180 4.180 24 C -0.249 4.249 25 C -0.115 4.115 26 N -0.095 5.095 27 C -0.074 4.074 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.238 0.762 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.194 0.806 41 H 0.178 0.822 42 H 0.216 0.784 43 H 0.098 0.902 44 H 0.129 0.871 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.827 6.488 23.176 28.805 hybrid contribution 2.023 0.633 1.175 2.424 sum -13.804 7.121 24.351 28.883 Atomic orbital electron populations 1.22028 0.91058 1.04091 1.03699 1.21351 0.96690 0.97045 0.81824 0.88767 1.21890 0.79123 1.01975 0.98310 1.45734 1.08124 1.59715 1.22976 1.19934 0.88692 0.77036 0.82038 1.90686 1.70239 1.48370 1.34276 1.23366 0.95146 1.05353 1.04415 1.85451 1.05616 1.74786 1.25283 1.23197 0.91861 1.44624 1.10155 0.90332 1.26102 1.05161 0.93698 0.93931 1.70175 1.37444 1.36381 1.10559 0.84967 0.75781 0.79253 0.78068 1.19094 1.20047 1.18519 1.47547 1.49506 1.13645 1.21740 1.22688 1.02112 0.79656 1.04280 1.17297 0.77982 0.85570 0.81726 1.90764 1.63108 1.15997 1.76762 1.20034 1.11283 0.93575 0.95166 1.22562 1.02670 0.93284 0.99472 1.21277 1.06225 0.98729 0.98708 1.22677 1.03855 0.86938 0.98013 1.44101 1.40045 1.08218 1.17159 1.22303 1.03608 0.76986 1.04527 0.91581 0.89644 0.90264 0.90437 0.90324 0.76154 0.88157 0.87817 0.91881 0.91986 0.88072 0.88684 0.80574 0.82175 0.78395 0.90240 0.87092 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.18 71.98 0.66 -1.11 16 2 C 0.13 2.36 2.79 44.99 0.13 2.49 16 3 H 0.09 2.01 6.91 -2.38 -0.02 1.99 16 4 C 0.11 2.45 4.97 86.38 0.43 2.88 16 5 N -0.71 -20.02 5.39 -463.05 -2.49 -22.51 16 6 C 0.54 20.65 7.85 87.66 0.69 21.34 16 7 O -0.56 -25.80 15.86 -3.04 -0.05 -25.85 16 8 C -0.13 -5.55 6.16 71.24 0.44 -5.11 16 9 S -0.14 -7.84 20.57 -56.49 -1.16 -9.00 16 10 C -0.55 -32.17 9.50 67.95 0.65 -31.52 16 11 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 12 C 0.02 0.93 5.49 84.86 0.47 1.39 16 13 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 14 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 18 N -0.59 -10.63 2.24 -827.30 -1.86 -12.48 16 19 C 0.05 0.69 7.77 127.77 0.99 1.68 16 20 C 0.58 13.40 7.33 86.45 0.63 14.04 16 21 O -0.58 -16.53 14.12 -4.35 -0.06 -16.59 16 22 C -0.09 -1.86 6.73 40.35 0.27 -1.59 16 23 C -0.15 -2.69 8.74 22.57 0.20 -2.50 16 24 C -0.23 -3.50 10.81 22.01 0.24 -3.26 16 25 C 0.02 0.30 11.37 83.48 0.95 1.25 16 26 N -0.42 -7.81 3.16 -534.33 -1.69 -9.50 16 27 C 0.07 0.99 10.51 127.77 1.34 2.33 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.73 6.67 -2.39 -0.02 0.71 16 31 H 0.08 1.67 7.84 -2.38 -0.02 1.65 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.40 10.63 7.87 -92.71 -0.73 9.90 16 34 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 35 H 0.10 4.04 8.14 -2.40 -0.02 4.02 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.06 0.89 7.38 -2.38 -0.02 0.87 16 38 H 0.10 1.09 5.28 -2.39 -0.01 1.07 16 39 H 0.09 0.85 6.44 -2.38 -0.02 0.84 16 40 H 0.18 2.40 4.38 -2.91 -0.01 2.38 16 41 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.11 0.96 8.12 -2.39 -0.02 0.94 16 45 H 0.08 1.56 6.51 -2.38 -0.02 1.55 16 Total: -1.00 -82.01 383.12 3.37 -78.64 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.29 Total: 24.66 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 8.08 Total: 2.31 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -5.75 Total: -100.38 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.11 Total: -42.45 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.16 Total: -9.00 kcal Total: -82.01 3.37 -78.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280430739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.542 kcal (2) G-P(sol) polarization free energy of solvation -82.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds