Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46929 * 2 1 4 4 C 1.52999 * 109.46800 * 119.99297 * 2 1 3 5 5 N 1.46503 * 109.47214 * 175.00457 * 4 2 1 6 6 C 1.34775 * 120.00184 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99921 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00020 * 179.97438 * 6 5 4 9 9 S 1.80993 * 109.47199 * 179.97438 * 8 6 5 10 10 C 1.76203 * 100.00064 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99862 * 359.97438 * 10 9 8 12 12 C 1.38800 * 120.00030 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00091 * 180.02562 * 12 10 9 14 14 Si 1.86809 * 119.99984 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.46987 * 90.00092 * 14 12 10 16 16 H 1.48501 * 109.46851 * 210.00152 * 14 12 10 17 17 H 1.48498 * 109.46965 * 330.00052 * 14 12 10 18 18 N 1.46500 * 109.47534 * 239.99345 * 2 1 3 19 19 C 1.46506 * 120.00021 * 300.00144 * 18 2 1 20 20 C 1.34773 * 119.99767 * 119.99911 * 18 2 1 21 21 O 1.21695 * 120.00275 * 7.75722 * 20 18 2 22 22 C 1.46681 * 119.99822 * 187.75924 * 20 18 2 23 23 C 1.37871 * 126.23375 * 353.19267 * 22 20 18 24 24 C 1.39829 * 107.08571 * 179.97438 * 23 22 20 25 25 C 1.35455 * 107.86798 * 359.97438 * 24 23 22 26 26 N 1.35537 * 108.86646 * 359.76905 * 25 24 23 27 27 C 1.46500 * 125.67555 * 180.26703 * 26 25 24 28 28 H 1.09006 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47898 * 300.00340 * 1 2 3 30 30 H 1.08999 * 109.46764 * 60.00838 * 1 2 3 31 31 H 1.08999 * 109.47411 * 295.00354 * 4 2 1 32 32 H 1.09002 * 109.47329 * 55.00045 * 4 2 1 33 33 H 0.96997 * 119.99691 * 359.97438 * 5 4 2 34 34 H 1.08999 * 109.47174 * 300.00201 * 8 6 5 35 35 H 1.09002 * 109.47146 * 59.99635 * 8 6 5 36 36 H 0.96998 * 119.99826 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.47063 * 246.69265 * 19 18 2 38 38 H 1.08996 * 109.46688 * 126.68774 * 19 18 2 39 39 H 1.08998 * 109.46682 * 6.69293 * 19 18 2 40 40 H 1.08001 * 126.45772 * 359.92705 * 23 22 20 41 41 H 1.08003 * 126.06772 * 180.02562 * 24 23 22 42 42 H 1.07994 * 125.56697 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.46611 * 265.10883 * 27 26 25 44 44 H 1.09000 * 109.47520 * 25.10847 * 27 26 25 45 45 H 1.09000 * 109.47007 * 145.10794 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1908 6 6 4.1729 -1.4289 2.1910 7 8 3.5697 -1.8838 3.1398 8 6 5.6748 -1.5375 2.1305 9 16 6.2780 -2.3904 3.6085 10 6 8.0099 -2.3774 3.2838 11 1 8.3861 -1.9250 2.3782 12 6 8.8905 -2.9486 4.1920 13 7 10.1842 -2.9384 3.9497 14 14 8.2397 -3.7317 5.7582 15 1 7.9529 -5.1676 5.5114 16 1 9.2566 -3.6076 6.8332 17 1 6.9922 -3.0423 6.1748 18 7 2.0184 -0.6907 -1.1961 19 6 1.6645 -2.0934 -1.4278 20 6 2.7933 -0.0358 -2.0832 21 8 3.2038 1.0804 -1.8250 22 6 3.1417 -0.6683 -3.3600 23 6 2.8612 -1.9665 -3.7296 24 6 3.3699 -2.1454 -5.0197 25 6 3.9392 -0.9790 -5.4074 26 7 3.8024 -0.0717 -4.4099 27 6 4.2809 1.3126 -4.4425 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.7515 -0.1581 2.1370 32 1 1.6053 -1.7197 1.2954 33 1 3.9823 -0.4627 0.4318 34 1 5.9629 -2.1003 1.2427 35 1 6.1097 -0.5390 2.0846 36 1 10.7996 -3.3379 4.5842 37 1 2.5606 -2.7102 -1.3595 38 1 1.2260 -2.1982 -2.4201 39 1 0.9437 -2.4151 -0.6761 40 1 2.3463 -2.7062 -3.1345 41 1 3.3175 -3.0524 -5.6038 42 1 4.4203 -0.8002 -6.3576 43 1 5.2635 1.3684 -3.9739 44 1 4.3521 1.6482 -5.4771 45 1 3.5831 1.9510 -3.9007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280430740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = 1.428965 kcal Electronic energy + Delta-G solvation = -27156.035081 eV Core-core repulsion = 23301.940131 eV Total energy + Delta-G solvation = -3854.094950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.78091 -40.04007 -38.95155 -36.86239 -34.48182 -33.14983 -32.41773 -32.12840 -29.59844 -29.17100 -27.84111 -26.52773 -26.01981 -25.50914 -23.45824 -21.17410 -20.55636 -20.34343 -19.52800 -17.86528 -17.51580 -17.01196 -16.56802 -16.30658 -15.95237 -15.58296 -15.12286 -15.00356 -14.92610 -14.47125 -13.97837 -13.90421 -13.61535 -13.50765 -13.36800 -13.20327 -13.05889 -12.92813 -12.77442 -12.68861 -12.56708 -12.39363 -12.22432 -11.86930 -11.43873 -11.24959 -11.22709 -10.99072 -10.58144 -10.20139 -9.84072 -9.51787 -9.15643 -8.99901 -8.93708 -8.92814 -8.50476 -8.47862 -6.89180 -6.26631 -3.98136 1.19055 2.21154 2.47378 2.78126 2.91088 3.01016 3.07082 3.33115 3.36459 3.52135 3.69134 4.17395 4.35097 4.47128 4.52346 4.68336 4.71468 4.75426 4.79953 4.87808 4.96208 5.06747 5.12321 5.12846 5.18891 5.24723 5.28015 5.30368 5.34087 5.44053 5.56555 5.65640 5.76519 5.78878 5.81305 5.89489 6.06153 6.13647 6.48936 6.55270 6.70327 6.89991 6.99714 7.63478 7.82519 7.96573 8.44523 8.51572 9.19474 10.82729 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.002797 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.908405 B =10009.921055 C =11312.430152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 H 0.110 0.890 4 C 0.113 3.887 5 N -0.732 5.732 6 C 0.532 3.468 7 O -0.521 6.521 8 C -0.124 4.124 9 S -0.140 6.140 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.881 5.881 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.598 5.598 19 C 0.061 3.939 20 C 0.589 3.411 21 O -0.549 6.549 22 C -0.053 4.053 23 C -0.160 4.160 24 C -0.210 4.210 25 C 0.015 3.985 26 N -0.411 5.411 27 C 0.070 3.930 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.270 0.730 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.167 0.833 41 H 0.142 0.858 42 H 0.168 0.832 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.544 5.801 -20.274 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.128 0.872 4 C -0.013 4.013 5 N -0.387 5.387 6 C 0.318 3.682 7 O -0.396 6.396 8 C -0.274 4.274 9 S 0.086 5.914 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.518 5.518 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 N -0.331 5.331 19 C -0.081 4.081 20 C 0.379 3.621 21 O -0.428 6.428 22 C -0.166 4.166 23 C -0.186 4.186 24 C -0.234 4.234 25 C -0.120 4.120 26 N -0.084 5.084 27 C -0.071 4.071 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.184 0.816 41 H 0.160 0.840 42 H 0.185 0.815 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.040 5.983 -18.456 28.620 hybrid contribution 1.106 0.213 -0.973 1.488 sum -19.934 6.195 -19.429 28.517 Atomic orbital electron populations 1.22082 0.93387 1.03043 1.03130 1.21434 0.94896 0.98383 0.82964 0.87224 1.21676 0.81251 1.01183 0.97158 1.45888 1.06882 1.61494 1.24394 1.20251 0.89412 0.76859 0.81716 1.90691 1.69859 1.46461 1.32603 1.23270 0.93505 1.05479 1.05177 1.84725 1.06873 1.75387 1.24438 1.22329 0.88706 1.44629 1.11194 0.89438 1.24714 0.94093 0.94540 0.97963 1.69942 1.01558 1.43557 1.36706 0.86729 0.80803 0.81203 0.83074 1.19210 1.19961 1.15905 1.47474 1.50691 1.12705 1.22208 1.22511 1.01691 0.81121 1.02806 1.17042 0.77901 0.84640 0.82475 1.90810 1.53919 1.19916 1.78167 1.19929 1.10282 0.94641 0.91765 1.22415 1.03796 0.95056 0.97285 1.20922 1.06535 0.98364 0.97618 1.22071 1.05760 0.89753 0.94445 1.43859 1.41529 1.10927 1.12096 1.22215 1.01960 0.79399 1.03553 0.91671 0.90636 0.91695 0.90294 0.91148 0.76567 0.88675 0.88560 0.91964 0.91155 0.89828 0.90299 0.81603 0.83978 0.81493 0.90248 0.89922 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.18 37.16 0.34 -0.65 16 2 C 0.13 1.11 2.74 -67.93 -0.19 0.93 16 3 H 0.11 1.13 6.93 -51.93 -0.36 0.77 16 4 C 0.11 1.24 4.96 -4.04 -0.02 1.22 16 5 N -0.73 -10.20 5.39 -60.29 -0.32 -10.53 16 6 C 0.53 9.83 7.85 -10.98 -0.09 9.75 16 7 O -0.52 -11.34 15.86 5.56 0.09 -11.25 16 8 C -0.12 -2.53 6.16 36.01 0.22 -2.31 16 9 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 10 C -0.52 -15.35 10.04 30.94 0.31 -15.04 16 11 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 12 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 13 N -0.88 -26.98 13.97 55.49 0.78 -26.21 16 14 Si 0.86 22.07 27.74 -169.99 -4.72 17.35 16 15 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 18 N -0.60 -5.43 2.24 -175.48 -0.39 -5.82 16 19 C 0.06 0.41 7.76 59.85 0.46 0.88 16 20 C 0.59 6.71 7.32 -12.85 -0.09 6.61 16 21 O -0.55 -7.54 14.26 5.19 0.07 -7.47 16 22 C -0.05 -0.57 6.82 -81.98 -0.56 -1.13 16 23 C -0.16 -1.44 8.85 -39.12 -0.35 -1.78 16 24 C -0.21 -1.76 10.81 -39.98 -0.43 -2.20 16 25 C 0.02 0.12 11.37 -16.91 -0.19 -0.07 16 26 N -0.41 -3.98 3.16 -120.23 -0.38 -4.36 16 27 C 0.07 0.54 10.36 59.85 0.62 1.16 16 28 H 0.06 0.35 6.90 -51.93 -0.36 -0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.76 7.38 -51.93 -0.38 0.38 16 33 H 0.40 5.36 7.87 -40.82 -0.32 5.03 16 34 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 35 H 0.10 1.88 8.14 -51.91 -0.42 1.46 16 36 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.07 0.53 7.34 -51.93 -0.38 0.15 16 38 H 0.08 0.46 5.49 -51.93 -0.29 0.17 16 39 H 0.08 0.44 6.12 -51.93 -0.32 0.12 16 40 H 0.17 1.13 4.11 -52.49 -0.22 0.92 16 41 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 42 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 45 H 0.10 0.86 6.79 -51.93 -0.35 0.50 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -36.86 380.20 -7.55 -44.41 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.36 Total: 3.66 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.05 Total: 0.12 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.32 Total: -46.92 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.16 Total: -18.72 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.35 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.86 -7.55 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280430740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.842 kcal (2) G-P(sol) polarization free energy of solvation -36.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds