Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47389 * 2 1 4 4 C 1.47202 * 109.46830 * 240.00468 * 2 1 3 5 5 N 2.60804 * 109.47024 * 240.00302 * 2 1 3 6 6 C 1.50700 * 109.47196 * 120.00717 * 2 1 3 7 7 O 1.21272 * 120.00190 * 119.99625 * 6 2 1 8 8 N 1.34779 * 119.99514 * 299.99950 * 6 2 1 9 9 C 1.46502 * 119.99832 * 180.02562 * 8 6 2 10 10 C 1.52993 * 109.47374 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.47478 * 175.59040 * 10 9 8 12 12 C 1.53006 * 115.54550 * 279.33564 * 11 10 9 13 13 N 1.46504 * 109.47051 * 295.15982 * 12 11 10 14 14 C 1.34775 * 119.99970 * 174.40799 * 13 12 11 15 15 O 1.21283 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00212 * 179.97438 * 14 13 12 17 17 S 1.80995 * 109.47297 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99994 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00009 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99940 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00025 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99999 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47127 * 89.99558 * 22 20 18 24 24 H 1.48495 * 109.47155 * 209.99700 * 22 20 18 25 25 H 1.48500 * 109.46729 * 330.00011 * 22 20 18 26 26 C 1.52999 * 117.50484 * 133.62717 * 11 10 9 27 27 C 1.52994 * 59.99971 * 252.50844 * 26 11 10 28 28 H 1.08992 * 109.47305 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47220 * 59.99283 * 1 2 3 30 30 H 1.09001 * 109.47203 * 299.99903 * 1 2 3 31 31 H 0.97000 * 120.00114 * 359.97438 * 8 6 2 32 32 H 1.09005 * 109.46965 * 299.99853 * 9 8 6 33 33 H 1.09003 * 109.47072 * 59.99867 * 9 8 6 34 34 H 1.09008 * 109.46864 * 295.58761 * 10 9 8 35 35 H 1.08997 * 109.47230 * 55.58285 * 10 9 8 36 36 H 1.08995 * 109.47018 * 55.16005 * 12 11 10 37 37 H 1.09006 * 109.46901 * 175.16136 * 12 11 10 38 38 H 0.96996 * 120.00068 * 354.39683 * 13 12 11 39 39 H 1.08999 * 109.47246 * 299.99830 * 16 14 13 40 40 H 1.09001 * 109.46762 * 59.99852 * 16 14 13 41 41 H 0.96993 * 119.99885 * 180.02562 * 21 20 18 42 42 H 1.09001 * 117.49317 * 0.02562 * 26 11 10 43 43 H 1.08996 * 117.50062 * 145.01390 * 26 11 10 44 44 H 1.08998 * 117.49980 * 252.51034 * 27 26 11 45 45 H 1.09007 * 117.50150 * 107.48773 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1295 6 6 2.0324 -0.7106 1.2304 7 8 2.7295 -1.6966 1.1190 8 7 1.7067 -0.2502 2.4545 9 6 2.1955 -0.9405 3.6506 10 6 1.6849 -0.2199 4.8999 11 6 2.1028 -1.0021 6.1466 12 6 1.2262 -2.2070 6.4942 13 7 -0.1204 -1.7469 6.8425 14 6 -1.0994 -2.6433 7.0759 15 8 -0.8657 -3.8308 6.9972 16 6 -2.4844 -2.1701 7.4348 17 16 -3.5649 -3.6005 7.6844 18 6 -5.0731 -2.7795 8.0795 19 1 -5.1096 -1.7004 8.1062 20 6 -6.2142 -3.5196 8.3564 21 7 -6.1699 -4.8347 8.3234 22 14 -7.8133 -2.6491 8.7746 23 1 -8.5803 -2.3970 7.5282 24 1 -8.6172 -3.5019 9.6865 25 1 -7.5135 -1.3565 9.4413 26 6 2.7088 -0.2106 7.3072 27 6 3.5995 -1.1078 6.4456 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 1.1494 0.5387 2.5436 32 1 1.8325 -1.9684 3.6507 33 1 3.2855 -0.9401 3.6505 34 1 2.1106 0.7828 4.9405 35 1 0.5978 -0.1517 4.8612 36 1 1.1708 -2.8758 5.6354 37 1 1.6590 -2.7388 7.3416 38 1 -0.3073 -0.7972 6.9052 39 1 -2.4414 -1.5825 8.3518 40 1 -2.8786 -1.5541 6.6265 41 1 -6.9674 -5.3518 8.5166 42 1 2.8093 0.8676 7.1827 43 1 2.4829 -0.5479 8.3188 44 1 3.9597 -2.0355 6.8903 45 1 4.2866 -0.6199 5.7541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281543327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = -34.911985 kcal Electronic energy + Delta-G solvation = -25691.648276 eV Core-core repulsion = 21835.977464 eV Total energy + Delta-G solvation = -3855.670812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57002 -39.66398 -38.35918 -36.99436 -35.41992 -33.94429 -33.82726 -32.44778 -30.48342 -29.72342 -26.46410 -25.88097 -25.42510 -24.16891 -22.70450 -21.43441 -20.34354 -19.63240 -18.45881 -17.88121 -17.64798 -16.54086 -16.40133 -16.15995 -15.83386 -15.54175 -15.08609 -14.84417 -14.82158 -14.51222 -14.31894 -13.92608 -13.72246 -13.51115 -13.15240 -13.12699 -13.07215 -12.81292 -12.65348 -12.58191 -12.33840 -12.15467 -12.00702 -11.83985 -11.82490 -11.45687 -11.08504 -11.04600 -10.80883 -10.64422 -10.42079 -10.23510 -9.83547 -9.57662 -9.40163 -9.09110 -8.90287 -8.25351 -6.52129 -6.23570 -3.94347 2.01057 2.05457 2.39886 2.81926 2.94278 3.07763 3.20280 3.22063 3.27865 3.32346 3.40296 3.77900 4.08233 4.18306 4.23317 4.26387 4.32753 4.41159 4.45404 4.51865 4.81431 4.90608 4.95393 5.06535 5.08975 5.11536 5.17519 5.30336 5.39949 5.47616 5.51378 5.54891 5.61381 5.69189 5.72960 5.77648 5.85639 5.86608 5.91789 6.10334 6.57924 6.86760 7.15612 7.57261 7.63994 7.68824 8.32976 8.59333 9.21625 10.83810 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.002231 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.994713 B =12547.834855 C =14473.548585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.010 4.010 3 H 0.141 0.859 4 C 0.219 3.781 5 N -0.410 5.410 6 C 0.522 3.478 7 O -0.524 6.524 8 N -0.723 5.723 9 C 0.120 3.880 10 C -0.094 4.094 11 C -0.140 4.140 12 C 0.158 3.842 13 N -0.735 5.735 14 C 0.531 3.469 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.165 4.165 27 C -0.162 4.162 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.404 0.596 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.684 18.892 -8.908 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.085 5.085 6 C 0.305 3.695 7 O -0.399 6.399 8 N -0.375 5.375 9 C -0.003 4.003 10 C -0.131 4.131 11 C -0.141 4.141 12 C 0.034 3.966 13 N -0.390 5.390 14 C 0.317 3.683 15 O -0.391 6.391 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.202 4.202 27 C -0.199 4.199 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.238 0.762 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.071 15.169 -10.494 26.532 hybrid contribution -1.771 2.979 0.870 3.574 sum 17.300 18.148 -9.624 26.856 Atomic orbital electron populations 1.21835 0.89276 1.04766 1.04581 1.18842 0.98988 1.00081 0.85566 0.84161 1.28068 0.93900 0.94044 0.94024 1.81213 1.07631 1.07581 1.12045 1.19987 0.80629 0.84717 0.84196 1.90817 1.37070 1.25571 1.86483 1.45859 1.53935 1.32342 1.05368 1.21420 0.99580 0.97023 0.82281 1.21298 1.02152 0.98278 0.91405 1.21528 0.95892 0.99712 0.97002 1.20734 0.81485 0.93633 1.00730 1.45946 1.09693 1.09843 1.73526 1.20314 0.85924 0.86138 0.75965 1.90717 1.82544 1.16348 1.49514 1.23519 0.95674 1.06920 1.04211 1.85442 1.03020 1.04141 1.90787 1.22858 0.95608 0.94998 1.54919 0.90942 1.25000 0.98878 0.94907 0.94842 1.70017 1.29626 1.04751 1.45835 0.86169 0.81722 0.79203 0.78408 1.20273 1.20758 1.19706 1.23111 1.03205 0.98078 0.95806 1.23021 0.91502 1.02325 1.03091 0.90711 0.90084 0.89729 0.76153 0.90684 0.90987 0.90737 0.90131 0.90837 0.91612 0.76856 0.89280 0.89310 0.92165 0.88478 0.88261 0.88204 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 9.04 37.16 0.34 -0.07 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.34 16 3 H 0.14 0.05 8.14 -51.93 -0.42 -0.37 16 4 C 0.22 2.01 13.88 -20.76 -0.29 1.72 16 5 N -0.41 -5.14 18.54 42.15 0.78 -4.36 16 6 C 0.52 3.89 7.14 -10.98 -0.08 3.82 16 7 O -0.52 -6.76 16.03 5.56 0.09 -6.67 16 8 N -0.72 -3.45 5.45 -60.29 -0.33 -3.78 16 9 C 0.12 0.76 5.51 -4.04 -0.02 0.74 16 10 C -0.09 -0.44 5.23 -26.74 -0.14 -0.58 16 11 C -0.14 -0.90 1.52 -154.51 -0.23 -1.14 16 12 C 0.16 1.63 5.52 -4.04 -0.02 1.60 16 13 N -0.74 -8.62 5.25 -60.29 -0.32 -8.93 16 14 C 0.53 9.32 7.85 -10.99 -0.09 9.24 16 15 O -0.52 -11.43 15.85 5.55 0.09 -11.35 16 16 C -0.15 -2.92 6.16 36.00 0.22 -2.70 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 22 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.16 -0.93 9.90 -26.73 -0.26 -1.19 16 27 C -0.16 -0.93 9.57 -26.74 -0.26 -1.19 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.05 7.56 -51.93 -0.39 -0.35 16 31 H 0.40 0.53 7.89 -40.82 -0.32 0.21 16 32 H 0.07 0.67 7.69 -51.93 -0.40 0.27 16 33 H 0.07 0.49 7.80 -51.93 -0.40 0.09 16 34 H 0.07 0.23 7.94 -51.92 -0.41 -0.18 16 35 H 0.08 0.39 7.62 -51.93 -0.40 -0.01 16 36 H 0.07 0.87 7.68 -51.93 -0.40 0.48 16 37 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.40 3.48 8.24 -40.82 -0.34 3.14 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.10 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.48 7.98 -51.93 -0.41 0.06 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -39.68 404.88 -7.84 -47.51 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.82 Total: -2.78 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.93 Total: -2.77 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.87 Total: -42.20 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.18 Total: -18.02 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.68 -7.84 -47.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281543327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.601 kcal (2) G-P(sol) polarization free energy of solvation -39.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds