Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47181 * 2 1 4 4 C 1.47193 * 109.47025 * 120.00137 * 2 1 3 5 5 N 2.60799 * 109.47085 * 120.00184 * 2 1 3 6 6 C 1.50705 * 109.46851 * 239.99857 * 2 1 3 7 7 O 1.21278 * 120.00009 * 239.99717 * 6 2 1 8 8 N 1.34776 * 119.99927 * 60.28234 * 6 2 1 9 9 C 1.46497 * 120.00050 * 179.72360 * 8 6 2 10 10 C 1.53002 * 109.47148 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46985 * 175.02900 * 10 9 8 12 12 C 1.52996 * 115.55379 * 278.47798 * 11 10 9 13 13 N 1.46503 * 109.47424 * 303.79524 * 12 11 10 14 14 C 1.34770 * 120.00057 * 176.99954 * 13 12 11 15 15 O 1.21284 * 120.00306 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99660 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.46943 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00017 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00039 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00010 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00368 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99845 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47045 * 60.00382 * 22 20 18 24 24 H 1.48502 * 109.46926 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47225 * 299.99990 * 22 20 18 26 26 C 1.53002 * 117.49536 * 132.76932 * 11 10 9 27 27 C 1.53003 * 60.00139 * 252.51378 * 26 11 10 28 28 H 1.08994 * 109.46819 * 300.00003 * 1 2 3 29 29 H 1.09008 * 109.46766 * 59.99847 * 1 2 3 30 30 H 1.08998 * 109.46920 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00015 * 359.71232 * 8 6 2 32 32 H 1.08998 * 109.47188 * 299.99756 * 9 8 6 33 33 H 1.08998 * 109.47278 * 59.99732 * 9 8 6 34 34 H 1.08998 * 109.47332 * 295.03485 * 10 9 8 35 35 H 1.08997 * 109.46913 * 55.03547 * 10 9 8 36 36 H 1.09002 * 109.46887 * 63.79756 * 12 11 10 37 37 H 1.09000 * 109.47004 * 183.78983 * 12 11 10 38 38 H 0.96997 * 119.99435 * 356.99666 * 13 12 11 39 39 H 1.08997 * 109.47168 * 300.00233 * 16 14 13 40 40 H 1.08998 * 109.47038 * 60.00433 * 16 14 13 41 41 H 0.96998 * 120.00565 * 180.02562 * 21 20 18 42 42 H 1.09002 * 117.49635 * 0.02562 * 26 11 10 43 43 H 1.09005 * 117.49886 * 145.02373 * 26 11 10 44 44 H 1.08996 * 117.49662 * 252.51488 * 27 26 11 45 45 H 1.08994 * 117.49656 * 107.49049 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1294 6 6 2.0323 -0.7105 -1.2305 7 8 2.7296 -1.6965 -1.1192 8 7 1.7114 -0.2467 -2.4546 9 6 2.2047 -0.9338 -3.6507 10 6 1.6988 -0.2096 -4.9000 11 6 2.3134 -0.8514 -6.1455 12 6 3.7326 -0.3959 -6.4906 13 7 3.7556 1.0616 -6.6376 14 6 4.9192 1.6958 -6.8832 15 8 5.9473 1.0601 -6.9821 16 6 4.9426 3.1950 -7.0349 17 16 6.6379 3.7425 -7.3548 18 6 6.3785 5.4802 -7.4866 19 1 5.3853 5.8882 -7.3710 20 6 7.4507 6.3248 -7.7389 21 7 8.6612 5.8276 -7.8802 22 14 7.1757 8.1673 -7.8779 23 1 6.6067 8.6802 -6.6057 24 1 8.4706 8.8419 -8.1490 25 1 6.2314 8.4444 -8.9899 26 6 1.3740 -1.1793 -7.3078 27 6 1.9458 -2.3061 -6.4450 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1537 0.5419 -2.5436 32 1 3.2946 -0.9334 -3.6465 33 1 1.8417 -1.9616 -3.6550 34 1 0.6127 -0.2866 -4.9498 35 1 1.9868 0.8406 -4.8527 36 1 4.4132 -0.6914 -5.6921 37 1 4.0460 -0.8604 -7.4255 38 1 2.9334 1.5700 -6.5582 39 1 4.3031 3.4859 -7.8682 40 1 4.5784 3.6587 -6.1182 41 1 9.4106 6.4178 -8.0562 42 1 0.3182 -0.9375 -7.1852 43 1 1.7670 -1.0705 -8.3187 44 1 2.7150 -2.9385 -6.8883 45 1 1.2662 -2.8058 -5.7548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281543328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = -34.025509 kcal Electronic energy + Delta-G solvation = -25684.165553 eV Core-core repulsion = 21828.533181 eV Total energy + Delta-G solvation = -3855.632371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57411 -39.67105 -38.35940 -36.99433 -35.41503 -33.95992 -33.86234 -32.44605 -30.47386 -29.72781 -26.46278 -25.92282 -25.42262 -24.19258 -22.70195 -21.43619 -20.36062 -19.62516 -18.45529 -17.87698 -17.65211 -16.67250 -16.25539 -16.10554 -16.04133 -15.36172 -15.17152 -14.82496 -14.76484 -14.61899 -14.24724 -13.91790 -13.81571 -13.47332 -13.21056 -13.15224 -13.11107 -12.84565 -12.64431 -12.58472 -12.36835 -12.19591 -11.99147 -11.84166 -11.81507 -11.45895 -11.06656 -11.05770 -10.81501 -10.66150 -10.41199 -10.21671 -9.84282 -9.57750 -9.40952 -9.08242 -8.90128 -8.25664 -6.52016 -6.23147 -3.94098 2.01862 2.04979 2.40154 2.81985 2.94978 3.07635 3.21545 3.22282 3.27140 3.31646 3.39530 3.75988 4.06697 4.18636 4.22663 4.23745 4.33114 4.42186 4.45084 4.51631 4.79917 4.86855 4.90740 5.02175 5.05954 5.11800 5.17866 5.30657 5.36106 5.40759 5.51988 5.54684 5.60858 5.68904 5.70924 5.77848 5.85214 5.86419 5.91911 6.10124 6.57532 6.86703 7.15826 7.57079 7.64012 7.68013 8.32945 8.59041 9.21820 10.84167 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.002236 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.040168 B =12520.183402 C =14412.472501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 H 0.143 0.857 4 C 0.219 3.781 5 N -0.410 5.410 6 C 0.522 3.478 7 O -0.524 6.524 8 N -0.723 5.723 9 C 0.120 3.880 10 C -0.094 4.094 11 C -0.140 4.140 12 C 0.159 3.841 13 N -0.735 5.735 14 C 0.531 3.469 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.165 4.165 27 C -0.162 4.162 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.404 0.596 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.464 -11.384 8.085 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 H 0.161 0.839 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.305 3.695 7 O -0.399 6.399 8 N -0.375 5.375 9 C -0.003 4.003 10 C -0.132 4.132 11 C -0.141 4.141 12 C 0.035 3.965 13 N -0.390 5.390 14 C 0.317 3.683 15 O -0.391 6.391 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.202 4.202 27 C -0.200 4.200 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.238 0.762 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.432 -13.960 9.362 27.237 hybrid contribution -2.103 2.792 -0.421 3.521 sum -23.535 -11.168 8.941 27.542 Atomic orbital electron populations 1.21808 0.89513 1.04309 1.04545 1.18851 0.98793 1.00414 0.85603 0.83920 1.28049 0.93934 0.94022 0.94014 1.81215 1.07435 1.07761 1.12030 1.19974 0.80593 0.84736 0.84182 1.90819 1.36795 1.25840 1.86481 1.45856 1.53930 1.32349 1.05367 1.21413 1.00285 0.96312 0.82252 1.21304 1.00227 1.00178 0.91469 1.21519 0.96070 0.99555 0.96977 1.20727 0.93172 0.81027 1.01622 1.45956 1.10338 1.07169 1.75585 1.20315 0.82886 0.89695 0.75438 1.90716 1.32416 1.67795 1.48174 1.23520 1.08420 0.93595 1.04793 1.85439 0.99258 1.05476 1.93171 1.22816 0.96951 0.91725 1.56976 0.90994 1.24995 0.94444 0.99559 0.94589 1.70004 0.99087 1.35858 1.45289 0.86228 0.77678 0.82866 0.78743 1.19945 1.20815 1.19947 1.23138 0.98662 1.02607 0.95772 1.23014 1.03513 0.90328 1.03119 0.90100 0.89842 0.91015 0.76152 0.90676 0.90988 0.90674 0.90195 0.90975 0.91480 0.76872 0.89273 0.89315 0.92101 0.88501 0.88276 0.88197 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.22 9.05 37.16 0.34 0.11 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.35 16 3 H 0.14 0.20 8.14 -51.93 -0.42 -0.23 16 4 C 0.22 2.02 13.88 -20.76 -0.29 1.74 16 5 N -0.41 -5.16 18.54 42.16 0.78 -4.38 16 6 C 0.52 3.92 7.14 -10.98 -0.08 3.84 16 7 O -0.52 -6.78 16.03 5.56 0.09 -6.69 16 8 N -0.72 -3.45 5.45 -60.30 -0.33 -3.77 16 9 C 0.12 0.76 5.50 -4.04 -0.02 0.74 16 10 C -0.09 -0.44 5.19 -26.73 -0.14 -0.58 16 11 C -0.14 -0.90 1.64 -154.51 -0.25 -1.16 16 12 C 0.16 1.64 5.56 -4.04 -0.02 1.61 16 13 N -0.74 -8.65 5.21 -60.29 -0.31 -8.96 16 14 C 0.53 9.35 7.85 -10.99 -0.09 9.27 16 15 O -0.52 -11.46 15.86 5.55 0.09 -11.37 16 16 C -0.15 -2.93 6.16 36.01 0.22 -2.70 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 19 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 22 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.16 -0.93 9.87 -26.73 -0.26 -1.20 16 27 C -0.16 -0.94 9.59 -26.73 -0.26 -1.19 16 28 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 29 H 0.08 -0.07 7.57 -51.92 -0.39 -0.47 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.40 0.52 7.90 -40.82 -0.32 0.20 16 32 H 0.07 0.67 7.93 -51.93 -0.41 0.26 16 33 H 0.07 0.49 7.75 -51.93 -0.40 0.09 16 34 H 0.07 0.22 7.93 -51.93 -0.41 -0.19 16 35 H 0.08 0.37 6.91 -51.93 -0.36 0.01 16 36 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 37 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.40 3.46 7.56 -40.82 -0.31 3.15 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.10 0.43 8.07 -51.93 -0.42 0.01 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.48 7.93 -51.93 -0.41 0.07 16 LS Contribution 403.97 15.07 6.09 6.09 Total: -1.00 -39.80 403.97 -7.82 -47.62 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.78 Total: -2.96 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.95 Total: -2.58 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.87 Total: -42.29 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.18 Total: -18.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -39.80 -7.82 -47.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281543328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.595 kcal (2) G-P(sol) polarization free energy of solvation -39.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds