Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47181 * 2 1 4 4 C 1.47193 * 109.47025 * 120.00137 * 2 1 3 5 5 N 2.60799 * 109.47085 * 120.00184 * 2 1 3 6 6 C 1.50705 * 109.46851 * 239.99857 * 2 1 3 7 7 O 1.21278 * 120.00009 * 239.99717 * 6 2 1 8 8 N 1.34776 * 119.99927 * 60.28234 * 6 2 1 9 9 C 1.46497 * 120.00050 * 179.72360 * 8 6 2 10 10 C 1.53002 * 109.47148 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46985 * 175.02900 * 10 9 8 12 12 C 1.52996 * 115.55379 * 278.47798 * 11 10 9 13 13 N 1.46503 * 109.47424 * 303.79524 * 12 11 10 14 14 C 1.34770 * 120.00057 * 176.99954 * 13 12 11 15 15 O 1.21284 * 120.00306 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99660 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.46943 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00017 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00039 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00010 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00368 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99845 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47045 * 60.00382 * 22 20 18 24 24 H 1.48502 * 109.46926 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47225 * 299.99990 * 22 20 18 26 26 C 1.53002 * 117.49536 * 132.76932 * 11 10 9 27 27 C 1.53003 * 60.00139 * 252.51378 * 26 11 10 28 28 H 1.08994 * 109.46819 * 300.00003 * 1 2 3 29 29 H 1.09008 * 109.46766 * 59.99847 * 1 2 3 30 30 H 1.08998 * 109.46920 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00015 * 359.71232 * 8 6 2 32 32 H 1.08998 * 109.47188 * 299.99756 * 9 8 6 33 33 H 1.08998 * 109.47278 * 59.99732 * 9 8 6 34 34 H 1.08998 * 109.47332 * 295.03485 * 10 9 8 35 35 H 1.08997 * 109.46913 * 55.03547 * 10 9 8 36 36 H 1.09002 * 109.46887 * 63.79756 * 12 11 10 37 37 H 1.09000 * 109.47004 * 183.78983 * 12 11 10 38 38 H 0.96997 * 119.99435 * 356.99666 * 13 12 11 39 39 H 1.08997 * 109.47168 * 300.00233 * 16 14 13 40 40 H 1.08998 * 109.47038 * 60.00433 * 16 14 13 41 41 H 0.96998 * 120.00565 * 180.02562 * 21 20 18 42 42 H 1.09002 * 117.49635 * 0.02562 * 26 11 10 43 43 H 1.09005 * 117.49886 * 145.02373 * 26 11 10 44 44 H 1.08996 * 117.49662 * 252.51488 * 27 26 11 45 45 H 1.08994 * 117.49656 * 107.49049 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1294 6 6 2.0323 -0.7105 -1.2305 7 8 2.7296 -1.6965 -1.1192 8 7 1.7114 -0.2467 -2.4546 9 6 2.2047 -0.9338 -3.6507 10 6 1.6988 -0.2096 -4.9000 11 6 2.3134 -0.8514 -6.1455 12 6 3.7326 -0.3959 -6.4906 13 7 3.7556 1.0616 -6.6376 14 6 4.9192 1.6958 -6.8832 15 8 5.9473 1.0601 -6.9821 16 6 4.9426 3.1950 -7.0349 17 16 6.6379 3.7425 -7.3548 18 6 6.3785 5.4802 -7.4866 19 1 5.3853 5.8882 -7.3710 20 6 7.4507 6.3248 -7.7389 21 7 8.6612 5.8276 -7.8802 22 14 7.1757 8.1673 -7.8779 23 1 6.6067 8.6802 -6.6057 24 1 8.4706 8.8419 -8.1490 25 1 6.2314 8.4444 -8.9899 26 6 1.3740 -1.1793 -7.3078 27 6 1.9458 -2.3061 -6.4450 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1537 0.5419 -2.5436 32 1 3.2946 -0.9334 -3.6465 33 1 1.8417 -1.9616 -3.6550 34 1 0.6127 -0.2866 -4.9498 35 1 1.9868 0.8406 -4.8527 36 1 4.4132 -0.6914 -5.6921 37 1 4.0460 -0.8604 -7.4255 38 1 2.9334 1.5700 -6.5582 39 1 4.3031 3.4859 -7.8682 40 1 4.5784 3.6587 -6.1182 41 1 9.4106 6.4178 -8.0562 42 1 0.3182 -0.9375 -7.1852 43 1 1.7670 -1.0705 -8.3187 44 1 2.7150 -2.9385 -6.8883 45 1 1.2662 -2.8058 -5.7548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281543328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = -64.290444 kcal Electronic energy + Delta-G solvation = -25685.477939 eV Core-core repulsion = 21828.533181 eV Total energy + Delta-G solvation = -3856.944757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18772 -40.73205 -39.27081 -37.73384 -36.03888 -35.12940 -34.55561 -34.32183 -31.27436 -30.82464 -27.81496 -27.20044 -26.23608 -24.70292 -23.18071 -22.00876 -21.69792 -20.36340 -19.68875 -18.98892 -18.19480 -17.80179 -17.30760 -16.85890 -16.83506 -16.77105 -16.37562 -16.03090 -15.68406 -15.46915 -15.24183 -14.91149 -14.59371 -14.38569 -14.34965 -14.15339 -14.09344 -13.75016 -13.35648 -13.25949 -13.14373 -13.07307 -12.83592 -12.76417 -12.69161 -12.58500 -12.38280 -12.27271 -12.01108 -11.73204 -11.24593 -11.10259 -11.07459 -10.90028 -10.66526 -10.23650 -10.14916 -10.03737 -8.64364 -8.31873 -6.10107 1.29503 1.41134 1.46209 1.48006 1.49821 1.58795 1.65569 1.71014 2.22316 2.29923 2.32891 2.79758 2.91411 3.02316 3.36254 3.63201 3.71379 3.79944 3.95588 3.98540 3.99651 4.05612 4.19884 4.29381 4.35397 4.38782 4.54984 4.66562 4.69893 4.79588 4.86308 4.89188 4.90019 5.08474 5.11514 5.19667 5.26392 5.30647 5.34511 5.40766 5.44147 5.46751 6.22160 6.38810 6.55426 6.56917 7.09298 7.18532 7.30007 8.76986 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.002236 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.040168 B =12520.183402 C =14412.472501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.005 4.005 3 H 0.184 0.816 4 C 0.240 3.760 5 N -0.481 5.481 6 C 0.519 3.481 7 O -0.589 6.589 8 N -0.701 5.701 9 C 0.121 3.879 10 C -0.083 4.083 11 C -0.143 4.143 12 C 0.158 3.842 13 N -0.703 5.703 14 C 0.531 3.469 15 O -0.571 6.571 16 C -0.126 4.126 17 S -0.159 6.159 18 C -0.543 4.543 19 H 0.086 0.914 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.260 1.260 24 H -0.282 1.282 25 H -0.261 1.261 26 C -0.151 4.151 27 C -0.163 4.163 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.058 0.942 31 H 0.425 0.575 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.418 0.582 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.270 0.730 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.924 -9.139 7.741 31.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.201 0.799 4 C -0.079 4.079 5 N -0.157 5.157 6 C 0.304 3.696 7 O -0.469 6.469 8 N -0.354 5.354 9 C -0.003 4.003 10 C -0.120 4.120 11 C -0.144 4.144 12 C 0.034 3.966 13 N -0.358 5.358 14 C 0.317 3.683 15 O -0.450 6.450 16 C -0.278 4.278 17 S 0.068 5.932 18 C -0.691 4.691 19 H 0.104 0.896 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.820 3.180 23 H -0.185 1.185 24 H -0.208 1.208 25 H -0.185 1.185 26 C -0.188 4.188 27 C -0.201 4.201 28 H 0.112 0.888 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.256 0.744 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.003 -11.683 9.009 29.896 hybrid contribution -0.795 1.972 -0.356 2.156 sum -26.798 -9.710 8.653 29.788 Atomic orbital electron populations 1.21904 0.86615 1.04264 1.06947 1.19228 1.00797 1.01042 0.81867 0.79867 1.29030 0.92129 0.92618 0.94090 1.81216 1.09856 1.10012 1.14619 1.20500 0.79587 0.83963 0.85565 1.90806 1.39846 1.28820 1.87408 1.45669 1.53114 1.32501 1.04126 1.21312 0.98433 0.96846 0.83665 1.21276 1.01904 0.99754 0.89101 1.21382 0.93936 1.00490 0.98634 1.20764 0.95856 0.79607 1.00337 1.45635 1.09305 1.07933 1.72915 1.20126 0.83655 0.89101 0.75402 1.90707 1.34709 1.68520 1.51070 1.23352 1.02978 0.94703 1.06724 1.85684 1.06929 1.06859 1.93750 1.23171 0.97675 0.91677 1.56578 0.89598 1.26156 0.93978 1.05300 0.93923 1.70187 1.00254 1.37854 1.46681 0.84999 0.77757 0.75709 0.79505 1.18455 1.20768 1.18535 1.23203 0.99501 1.01424 0.94695 1.23083 1.03527 0.89975 1.03486 0.88820 0.86308 0.92332 0.73570 0.94043 0.91447 0.87326 0.89551 0.93000 0.92828 0.74443 0.87043 0.86827 0.92103 0.86013 0.89271 0.89296 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.07 9.05 71.98 0.65 0.72 16 2 C -0.01 -0.03 3.10 -13.34 -0.04 -0.08 16 3 H 0.18 -0.26 8.14 -2.39 -0.02 -0.28 16 4 C 0.24 4.36 13.88 89.44 1.24 5.60 16 5 N -0.48 -12.64 18.54 20.00 0.37 -12.27 16 6 C 0.52 7.03 7.14 87.66 0.63 7.66 16 7 O -0.59 -15.64 16.03 -3.02 -0.05 -15.69 16 8 N -0.70 -4.67 5.45 -463.07 -2.52 -7.20 16 9 C 0.12 1.31 5.50 86.38 0.47 1.79 16 10 C -0.08 -0.46 5.19 30.60 0.16 -0.30 16 11 C -0.14 -1.51 1.64 -52.18 -0.09 -1.59 16 12 C 0.16 3.18 5.56 86.38 0.48 3.66 16 13 N -0.70 -15.27 5.21 -463.06 -2.41 -17.68 16 14 C 0.53 18.46 7.85 87.66 0.69 19.15 16 15 O -0.57 -26.19 15.86 -3.04 -0.05 -26.24 16 16 C -0.13 -4.67 6.16 71.24 0.44 -4.23 16 17 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 18 C -0.54 -30.18 9.50 67.95 0.65 -29.53 16 19 H 0.09 4.35 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.61 5.49 84.86 0.47 1.08 16 21 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 22 Si 1.00 42.50 29.55 68.60 2.03 44.53 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 C -0.15 -1.21 9.87 30.60 0.30 -0.91 16 27 C -0.16 -1.56 9.59 30.60 0.29 -1.27 16 28 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.12 -0.87 7.57 -2.38 -0.02 -0.88 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.43 -0.94 7.90 -92.71 -0.73 -1.68 16 32 H 0.04 0.75 7.93 -2.39 -0.02 0.73 16 33 H 0.07 0.82 7.75 -2.39 -0.02 0.80 16 34 H 0.11 -0.01 7.93 -2.39 -0.02 -0.03 16 35 H 0.09 0.40 6.91 -2.39 -0.02 0.38 16 36 H 0.05 1.28 7.93 -2.39 -0.02 1.27 16 37 H 0.05 1.24 8.10 -2.39 -0.02 1.23 16 38 H 0.42 5.72 7.56 -92.71 -0.70 5.02 16 39 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 40 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 41 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.12 0.44 8.07 -2.39 -0.02 0.42 16 43 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.11 0.78 7.93 -2.39 -0.02 0.76 16 Total: -1.00 -95.30 403.97 2.42 -92.88 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -0.41 Total: 5.23 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 6.34 Total: 1.75 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -4.28 Total: -92.62 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.10 Total: -41.93 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -95.30 2.42 -92.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281543328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.587 kcal (2) G-P(sol) polarization free energy of solvation -95.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds