Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 6 11 11 N 1.46500 * 109.47473 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00376 * 179.97438 * 11 10 9 13 13 O 1.21642 * 119.99765 * 359.97438 * 12 11 10 14 14 C 1.47186 * 119.99981 * 179.97438 * 12 11 10 15 15 C 1.44430 * 123.45842 * 179.73007 * 14 12 11 16 16 C 1.32765 * 113.08206 * 179.80697 * 15 14 12 17 17 S 1.75509 * 110.57750 * 0.44187 * 16 15 14 18 18 C 1.36010 * 123.46399 * 0.02562 * 14 12 11 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.36941 * 120.00103 * 84.99785 * 19 2 1 21 21 H 1.08000 * 119.99734 * 0.02562 * 20 19 2 22 22 C 1.38812 * 119.99814 * 180.02562 * 20 19 2 23 23 N 1.31613 * 120.00446 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99795 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47005 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47173 * 119.99511 * 24 22 20 27 27 H 1.48497 * 109.46943 * 239.99759 * 24 22 20 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.09001 * 109.47289 * 299.99918 * 10 9 7 39 39 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 40 40 H 0.97003 * 119.99983 * 359.97438 * 11 10 9 41 41 H 1.08001 * 123.45725 * 359.97438 * 15 14 12 42 42 H 1.08005 * 124.71640 * 180.17669 * 16 15 14 43 43 H 1.08003 * 124.58892 * 0.02562 * 18 14 12 44 44 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 45 45 H 0.96996 * 120.00501 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 6 7.4011 -1.9416 4.0704 11 7 7.8895 -2.6319 5.2667 12 6 9.2104 -2.6682 5.5319 13 8 9.9972 -2.1282 4.7775 14 6 9.7009 -3.3612 6.7342 15 6 11.0985 -3.4509 7.0871 16 6 11.3087 -4.1189 8.2150 17 16 9.7899 -4.6816 8.8909 18 6 8.8851 -3.9880 7.6239 19 7 2.0183 -0.6905 -1.1963 20 6 2.1490 -0.0072 -2.3758 21 1 1.8925 1.0408 -2.4241 22 6 2.6112 -0.6616 -3.5094 23 7 2.9242 -1.9386 -3.4505 24 14 2.7902 0.2706 -5.1183 25 1 2.3762 1.6830 -4.9207 26 1 4.2070 0.2269 -5.5607 27 1 1.9290 -0.3571 -6.1525 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.4421 -1.5889 4.8935 37 1 5.5874 -3.0996 3.9633 38 1 7.8357 -2.4019 3.1830 39 1 7.6896 -0.8914 4.1133 40 1 7.2621 -3.0628 5.8681 41 1 11.8910 -3.0166 6.4957 42 1 12.2799 -4.2957 8.6534 43 1 7.8097 -4.0398 7.5386 44 1 2.2489 -1.6317 -1.1529 45 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281722124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -42.021401 kcal Electronic energy + Delta-G solvation = -25311.316490 eV Core-core repulsion = 21455.337391 eV Total energy + Delta-G solvation = -3855.979099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28034 -39.54680 -37.25460 -36.64851 -35.42654 -34.38163 -32.32092 -31.70558 -30.05254 -29.11937 -28.04752 -25.74072 -24.31528 -23.62133 -22.31389 -21.64494 -20.64656 -19.83802 -19.41427 -18.55896 -17.54983 -17.25181 -16.92473 -16.25491 -15.69875 -15.54694 -15.32968 -14.92762 -14.82696 -14.24965 -13.75622 -13.69462 -13.57546 -13.49861 -13.34358 -13.20173 -12.87213 -12.77617 -12.49589 -12.17619 -12.02949 -11.74034 -11.60420 -11.55235 -11.08351 -10.92443 -10.75032 -10.63318 -10.30234 -10.25821 -9.99032 -9.71044 -9.62730 -9.57581 -9.39993 -8.93105 -8.90555 -8.83114 -6.94237 -5.74112 -3.02818 0.28047 1.04425 1.41726 1.59553 2.67335 2.69869 3.04561 3.40761 3.46377 3.52072 3.54240 4.21680 4.38738 4.60799 4.62172 4.75995 4.77483 4.79988 4.90173 5.13937 5.29231 5.33127 5.38132 5.56608 5.60082 5.62878 5.67532 5.75829 5.82949 5.87083 6.05315 6.06996 6.16774 6.33121 6.38576 6.46188 6.65145 6.69556 6.85810 7.05432 7.12695 7.58260 7.73808 7.90275 8.30922 8.44231 9.55790 10.12102 10.46507 11.48592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.001568 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.492732 B =17849.653091 C =18768.178067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.728 5.728 7 C 0.511 3.489 8 O -0.531 6.531 9 C -0.153 4.153 10 C 0.134 3.866 11 N -0.727 5.727 12 C 0.575 3.425 13 O -0.528 6.528 14 C -0.151 4.151 15 C -0.085 4.085 16 C -0.235 4.235 17 S 0.185 5.815 18 C -0.214 4.214 19 N -0.723 5.723 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.293 1.293 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.397 0.603 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.517 -7.035 31.080 32.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.379 5.379 7 C 0.295 3.705 8 O -0.407 6.407 9 C -0.194 4.194 10 C 0.010 3.990 11 N -0.379 5.379 12 C 0.360 3.640 13 O -0.405 6.405 14 C -0.169 4.169 15 C -0.114 4.114 16 C -0.370 4.370 17 S 0.450 5.550 18 C -0.353 4.353 19 N -0.365 5.365 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.229 0.771 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.231 0.769 41 H 0.173 0.827 42 H 0.188 0.812 43 H 0.187 0.813 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.300 -6.924 31.094 33.186 hybrid contribution -0.329 0.468 -1.670 1.765 sum 8.971 -6.456 29.425 31.432 Atomic orbital electron populations 1.22425 0.99142 1.00805 0.99960 1.20157 0.91881 0.95611 0.86047 0.93282 1.22052 0.93885 1.01762 0.99332 1.21479 0.94416 0.97217 0.87082 1.46101 1.07047 1.57111 1.27652 1.20209 0.82689 0.80781 0.86777 1.90793 1.55114 1.45368 1.49462 1.21804 0.96606 1.02805 0.98155 1.21089 0.91753 0.98713 0.87404 1.45823 1.07251 1.57505 1.27326 1.17579 0.82101 0.79766 0.84545 1.90847 1.55236 1.45373 1.49045 1.20350 0.93714 1.05061 0.97817 1.21187 0.95123 0.98886 0.96231 1.25549 1.02375 1.07567 1.01512 1.83119 0.96245 1.52041 1.23567 1.25681 1.04779 1.04268 1.00551 1.42455 1.78092 1.10633 1.05359 1.19271 1.36469 0.93868 0.87307 0.91136 1.24728 1.02140 0.95964 0.98077 1.69656 1.50961 1.08684 1.28771 0.86146 0.77336 0.78804 0.84087 1.20574 1.21863 1.21977 0.93542 0.94598 0.92720 0.91629 0.91970 0.91780 0.89645 0.77060 0.88375 0.88231 0.90034 0.90159 0.76868 0.82692 0.81187 0.81251 0.78315 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.92 4.87 -26.74 -0.13 -2.05 16 5 C 0.12 1.93 5.56 -4.04 -0.02 1.91 16 6 N -0.73 -8.84 5.56 -60.29 -0.33 -9.17 16 7 C 0.51 6.81 7.83 -10.99 -0.09 6.73 16 8 O -0.53 -9.98 15.98 5.56 0.09 -9.89 16 9 C -0.15 -1.23 5.81 -27.88 -0.16 -1.39 16 10 C 0.13 1.43 4.96 -4.04 -0.02 1.41 16 11 N -0.73 -6.13 5.52 -61.46 -0.34 -6.47 16 12 C 0.57 6.46 7.79 -12.63 -0.10 6.36 16 13 O -0.53 -8.30 16.80 5.24 0.09 -8.21 16 14 C -0.15 -1.30 5.98 -104.63 -0.63 -1.92 16 15 C -0.09 -0.69 10.10 -39.02 -0.39 -1.08 16 16 C -0.24 -1.34 11.12 28.86 0.32 -1.01 16 17 S 0.18 0.84 23.02 -107.50 -2.48 -1.63 16 18 C -0.21 -1.20 10.38 29.93 0.31 -0.89 16 19 N -0.72 -17.59 4.57 -53.43 -0.24 -17.84 16 20 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 24 Si 0.90 22.78 29.55 -169.99 -5.02 17.75 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.74 7.75 -51.93 -0.40 1.34 16 35 H 0.40 3.30 8.47 -40.82 -0.35 2.96 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 40 H 0.40 1.86 6.97 -40.82 -0.28 1.57 16 41 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.17 0.46 7.01 -52.48 -0.37 0.09 16 44 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 397.28 15.07 5.99 5.99 Total: -1.00 -36.95 397.28 -9.28 -46.23 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.75 Total: 9.38 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.00 Total: 1.49 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.19 Total: -61.10 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.18 Total: -18.10 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.48 Total: -1.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.95 -9.28 -46.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281722124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.206 kcal (2) G-P(sol) polarization free energy of solvation -36.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds