Wall clock time and date at job start Sat Apr 11 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47403 * 2 1 4 4 C 1.52998 * 109.46760 * 239.99467 * 2 1 3 5 5 C 1.52998 * 109.47205 * 175.00173 * 4 2 1 6 6 C 1.53002 * 109.47435 * 180.02562 * 5 4 2 7 7 N 1.46903 * 109.47117 * 180.02562 * 6 5 4 8 8 C 1.46905 * 110.99851 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47073 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99848 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00195 * 180.02562 * 9 8 7 12 12 C 1.37092 * 120.00444 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00239 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00392 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00021 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99881 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47079 * 90.00268 * 16 14 12 18 18 H 1.48504 * 109.47398 * 210.00380 * 16 14 12 19 19 H 1.48507 * 109.47114 * 330.00156 * 16 14 12 20 20 N 1.46503 * 109.47081 * 120.00022 * 2 1 3 21 21 C 1.34770 * 119.99738 * 274.99796 * 20 2 1 22 22 O 1.21634 * 120.00291 * 359.97438 * 21 20 2 23 23 C 1.47191 * 119.99817 * 180.02562 * 21 20 2 24 24 C 1.44425 * 123.46449 * 180.02562 * 23 21 20 25 25 C 1.32766 * 113.08895 * 179.97438 * 24 23 21 26 26 S 1.75505 * 110.57315 * 359.74176 * 25 24 23 27 27 C 1.36014 * 123.46276 * 0.02562 * 23 21 20 28 28 H 1.08998 * 109.46963 * 59.99527 * 1 2 3 29 29 H 1.08995 * 109.47918 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46828 * 300.00408 * 1 2 3 31 31 H 1.08997 * 109.47677 * 295.00140 * 4 2 1 32 32 H 1.09001 * 109.46930 * 55.00333 * 4 2 1 33 33 H 1.09002 * 109.47224 * 300.00414 * 5 4 2 34 34 H 1.09001 * 109.47046 * 60.00231 * 5 4 2 35 35 H 1.09009 * 109.46735 * 299.99757 * 6 5 4 36 36 H 1.08991 * 109.47374 * 59.99712 * 6 5 4 37 37 H 1.00894 * 110.99897 * 303.94947 * 7 6 5 38 38 H 1.08998 * 109.46776 * 299.99781 * 8 7 6 39 39 H 1.08998 * 109.46986 * 59.99941 * 8 7 6 40 40 H 0.97011 * 119.99783 * 359.97438 * 11 9 8 41 41 H 0.97006 * 119.99747 * 180.02562 * 15 14 12 42 42 H 0.97004 * 119.99641 * 94.99680 * 20 2 1 43 43 H 1.08006 * 123.45820 * 359.97438 * 24 23 21 44 44 H 1.08001 * 124.71648 * 179.97438 * 25 24 23 45 45 H 1.08002 * 124.58647 * 359.97438 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5647 -0.6135 -1.3137 6 6 4.0746 -1.3343 -2.5633 7 7 5.5387 -1.2313 -2.6248 8 6 6.0650 -1.9142 -3.8143 9 6 7.5664 -1.7880 -3.8429 10 8 8.1414 -1.1877 -2.9596 11 7 8.2701 -2.3411 -4.8504 12 6 9.6359 -2.2258 -4.8768 13 1 10.1480 -1.6914 -4.0903 14 6 10.3614 -2.7957 -5.9158 15 7 11.6706 -2.6856 -5.9407 16 14 9.4757 -3.7195 -7.2765 17 1 9.1261 -2.7763 -8.3689 18 1 10.3613 -4.7865 -7.8082 19 1 8.2355 -4.3304 -6.7341 20 7 2.0183 -0.6906 1.1962 21 6 2.1470 -0.0183 2.3571 22 8 1.8582 1.1620 2.4116 23 6 2.6382 -0.7120 3.5587 24 6 2.8042 -0.0655 4.8395 25 6 3.2593 -0.8840 5.7807 26 16 3.4985 -2.4972 5.1322 27 6 2.9824 -2.0277 3.5771 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7515 -1.7716 -1.2055 32 1 1.6053 -0.2619 -2.1369 33 1 3.8531 0.4367 -1.3574 34 1 3.9993 -1.0730 -0.4260 35 1 3.7862 -2.3847 -2.5199 36 1 3.6400 -0.8746 -3.4508 37 1 5.8346 -0.2670 -2.6006 38 1 5.7900 -2.9684 -3.7793 39 1 5.6445 -1.4585 -4.7107 40 1 7.8101 -2.8209 -5.5570 41 1 12.1770 -3.0831 -6.6664 42 1 2.2490 -1.6318 1.1526 43 1 2.5811 0.9767 5.0139 44 1 3.4517 -0.5978 6.8042 45 1 2.9302 -2.6871 2.7233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283124388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:49 Heat of formation + Delta-G solvation = -48.252062 kcal Electronic energy + Delta-G solvation = -25581.225897 eV Core-core repulsion = 21724.976616 eV Total energy + Delta-G solvation = -3856.249281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31333 -38.52217 -37.63640 -36.75219 -35.55894 -33.94699 -32.75430 -31.67362 -31.00381 -29.61670 -27.49139 -25.54127 -25.05094 -23.41644 -22.31427 -21.50665 -20.97427 -19.57368 -19.36518 -18.41555 -18.32140 -17.42248 -16.43973 -16.21694 -15.72405 -15.25557 -15.01036 -14.96649 -14.58645 -14.32253 -13.97373 -13.80460 -13.51587 -13.47689 -13.32473 -13.14396 -12.98194 -12.80653 -12.73672 -12.48966 -12.24823 -12.04182 -11.79622 -11.52785 -11.47896 -11.38546 -11.19116 -10.99013 -10.81967 -10.60254 -10.14805 -9.97908 -9.57819 -9.48463 -9.36304 -8.80580 -8.59401 -8.20100 -8.13554 -6.31386 -3.82817 0.39162 1.15830 1.53679 1.67490 2.86615 3.01816 3.05822 3.10467 3.14164 3.73912 4.00079 4.09787 4.33377 4.45965 4.64051 4.71584 4.73749 4.85925 4.92582 4.99750 5.04869 5.19027 5.22674 5.28129 5.31996 5.42034 5.47169 5.52102 5.60050 5.62700 5.67055 5.74577 5.81226 5.88744 5.89366 5.92523 6.00707 6.14921 6.23584 7.10645 7.20415 7.57068 7.58814 7.95089 8.14364 8.59603 8.94768 9.42124 9.82625 10.81754 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.001857 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.424733 B =15076.623660 C =16498.293208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.125 4.125 5 C -0.118 4.118 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.048 3.952 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.591 5.591 12 C -0.305 4.305 13 H 0.119 0.881 14 C 0.040 3.960 15 N -0.881 5.881 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 N -0.718 5.718 21 C 0.580 3.420 22 O -0.537 6.537 23 C -0.156 4.156 24 C -0.086 4.086 25 C -0.237 4.237 26 S 0.190 5.810 27 C -0.211 4.211 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.351 0.649 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.399 0.601 43 H 0.154 0.846 44 H 0.170 0.830 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.805 -0.940 16.588 30.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.156 4.156 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.085 4.085 9 C 0.235 3.765 10 O -0.446 6.446 11 N -0.231 5.231 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.521 5.521 16 Si 0.707 3.293 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.195 1.195 20 N -0.370 5.370 21 C 0.365 3.635 22 O -0.415 6.415 23 C -0.174 4.174 24 C -0.115 4.115 25 C -0.372 4.372 26 S 0.456 5.544 27 C -0.349 4.349 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.170 0.830 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.233 0.767 43 H 0.171 0.829 44 H 0.187 0.813 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -24.790 -1.616 18.144 30.763 hybrid contribution -1.115 0.582 -2.676 2.957 sum -25.905 -1.034 15.468 30.189 Atomic orbital electron populations 1.22179 0.95186 1.02120 1.02669 1.21016 0.93853 0.97808 0.83484 0.89094 1.21878 0.96283 1.01105 0.97110 1.21569 0.93994 1.01218 0.98847 1.21976 0.88132 1.00479 0.96427 1.60058 1.08197 1.21669 1.40413 1.21700 0.94753 1.00249 0.91755 1.19730 0.88062 0.84600 0.84109 1.90567 1.71047 1.44998 1.37987 1.42211 1.07877 1.50173 1.22799 1.19435 0.79590 1.33786 1.10554 0.86289 1.25047 0.95455 0.97853 0.97886 1.69624 1.05058 1.44591 1.32857 0.86663 0.79656 0.80390 0.82617 1.19663 1.20158 1.19497 1.45939 1.67520 1.13997 1.09536 1.17586 0.77215 0.86204 0.82447 1.90791 1.50339 1.15384 1.84988 1.20329 1.08287 0.93228 0.95560 1.21144 0.99071 1.01215 0.90043 1.25550 1.10151 0.97122 1.04385 1.83171 1.61730 1.10370 0.99169 1.25709 1.05476 0.99497 1.04241 0.91465 0.92479 0.92068 0.91214 0.90168 0.91739 0.90847 0.91259 0.95590 0.82999 0.89572 0.93824 0.79704 0.91617 0.76651 0.82867 0.81253 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.48 37.16 0.35 -0.81 16 2 C 0.14 1.14 2.58 -67.93 -0.17 0.97 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 4 C -0.13 -0.86 4.75 -26.73 -0.13 -0.98 16 5 C -0.12 -1.11 5.36 -26.73 -0.14 -1.26 16 6 C 0.06 0.65 5.69 -3.82 -0.02 0.63 16 7 N -0.67 -10.35 6.13 -115.05 -0.70 -11.06 16 8 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 9 C 0.45 10.30 7.82 -10.99 -0.09 10.21 16 10 O -0.56 -15.37 15.78 5.55 0.09 -15.28 16 11 N -0.59 -14.17 5.09 -10.97 -0.06 -14.22 16 12 C -0.30 -8.69 10.16 -14.94 -0.15 -8.84 16 13 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 14 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 15 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 16 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 20 N -0.72 -5.92 4.50 -54.96 -0.25 -6.16 16 21 C 0.58 6.36 7.76 -12.63 -0.10 6.26 16 22 O -0.54 -7.75 16.46 5.25 0.09 -7.67 16 23 C -0.16 -1.47 5.98 -104.63 -0.63 -2.09 16 24 C -0.09 -0.76 10.10 -39.02 -0.39 -1.16 16 25 C -0.24 -1.63 11.12 28.86 0.32 -1.31 16 26 S 0.19 1.19 23.02 -107.50 -2.48 -1.29 16 27 C -0.21 -1.52 10.38 29.93 0.31 -1.21 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 35 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.40 2.42 7.10 -40.82 -0.29 2.13 16 43 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.17 0.82 7.01 -52.49 -0.37 0.45 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -35.53 393.11 -8.94 -44.47 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -6.65 Total: 13.51 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.97 Total: 2.20 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.23 Total: -56.51 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.95 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.48 Total: -1.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.53 -8.94 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283124388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.784 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds