Wall clock time and date at job start Sat Apr 11 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 N 1.46896 * 109.46822 * 180.02562 * 6 5 4 8 8 C 1.46910 * 110.99921 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47000 * 179.97438 * 8 7 6 10 10 O 1.21288 * 120.00031 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99645 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99978 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99886 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00357 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99524 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00211 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46666 * 120.00071 * 16 14 12 19 19 H 1.48503 * 109.46918 * 239.99686 * 16 14 12 20 20 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 21 21 C 1.34777 * 119.99828 * 84.72116 * 20 2 1 22 22 O 1.21643 * 119.99981 * 0.28057 * 21 20 2 23 23 C 1.47188 * 120.00049 * 180.27659 * 21 20 2 24 24 C 1.44429 * 123.46329 * 180.02562 * 23 21 20 25 25 C 1.32762 * 113.08538 * 179.97438 * 24 23 21 26 26 S 1.75503 * 110.57795 * 359.97438 * 25 24 23 27 27 C 1.36003 * 123.46197 * 359.70837 * 23 21 20 28 28 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 32 32 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 33 33 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 34 34 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 35 35 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 36 36 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 37 37 H 1.00892 * 111.00594 * 303.95710 * 7 6 5 38 38 H 1.08996 * 109.46818 * 300.00347 * 8 7 6 39 39 H 1.09002 * 109.46632 * 59.99877 * 8 7 6 40 40 H 0.97002 * 120.00184 * 0.02562 * 11 9 8 41 41 H 0.97004 * 119.99885 * 179.97438 * 15 14 12 42 42 H 0.97001 * 120.00384 * 265.00562 * 20 2 1 43 43 H 1.08000 * 123.45407 * 359.95925 * 24 23 21 44 44 H 1.08008 * 124.71148 * 180.02562 * 25 24 23 45 45 H 1.08010 * 124.59161 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 7 5.5388 -1.2300 2.6253 8 6 6.0650 -1.9117 3.8155 9 6 7.5663 -1.7844 3.8446 10 8 8.1413 -1.1843 2.9611 11 7 8.2700 -2.3364 4.8528 12 6 9.6357 -2.2201 4.8797 13 1 10.1478 -1.6865 4.0926 14 6 10.3613 -2.7897 5.9188 15 7 9.7382 -3.4394 6.8762 16 14 12.2223 -2.6319 5.9550 17 1 12.6766 -1.8596 4.7708 18 1 12.6351 -1.9265 7.1948 19 1 12.8343 -3.9846 5.9278 20 7 2.0184 -0.6906 -1.1962 21 6 2.1417 -0.0196 -2.3585 22 8 1.8524 1.1607 -2.4131 23 6 2.6266 -0.7148 -3.5618 24 6 2.7877 -0.0696 -4.8438 25 6 3.2385 -0.8891 -5.7861 26 16 3.4873 -2.4999 -5.1352 27 6 2.9749 -2.0294 -3.5791 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4259 34 1 3.8532 0.4369 1.3573 35 1 3.6402 -0.8742 3.4508 36 1 3.7865 -2.3844 2.5200 37 1 5.9630 -1.5910 1.7842 38 1 5.6438 -1.4557 4.7114 39 1 5.7907 -2.9661 3.7811 40 1 7.8101 -2.8160 5.5595 41 1 10.2447 -3.8373 7.6015 42 1 2.2490 -1.6318 -1.1527 43 1 2.5641 0.9725 -5.0182 44 1 3.4268 -0.6039 -6.8106 45 1 2.9310 -2.6867 -2.7232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283124389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:52 Heat of formation + Delta-G solvation = -55.396550 kcal Electronic energy + Delta-G solvation = -25535.967067 eV Core-core repulsion = 21679.407977 eV Total energy + Delta-G solvation = -3856.559089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31212 -38.33693 -37.61717 -36.72789 -35.48487 -33.89182 -32.71663 -31.27365 -30.90804 -29.61775 -27.33099 -25.53478 -25.03803 -23.54190 -22.31178 -21.45045 -20.96220 -19.58380 -19.20494 -18.42988 -17.87841 -17.42489 -16.53855 -16.01928 -15.66812 -15.28682 -14.98550 -14.67372 -14.55842 -14.32713 -13.91564 -13.79990 -13.66488 -13.44779 -13.30146 -13.23727 -12.95401 -12.82337 -12.60609 -12.41248 -11.93363 -11.81563 -11.56944 -11.51150 -11.43215 -11.32927 -11.06732 -10.89336 -10.78260 -10.34247 -10.22312 -10.14802 -9.52061 -9.49837 -9.36434 -8.82583 -8.45781 -8.04830 -7.95650 -6.41852 -3.82543 0.36967 1.13567 1.51315 1.66133 2.86839 3.09681 3.16351 3.26848 3.34435 3.90978 4.04750 4.23784 4.32442 4.52346 4.66500 4.76414 4.80848 4.84628 4.98068 5.07198 5.14512 5.24675 5.26930 5.30705 5.40269 5.42313 5.50833 5.54957 5.66775 5.68135 5.75789 5.80119 5.87659 5.91929 5.98829 6.06389 6.17935 6.25573 6.29252 7.19820 7.24233 7.55487 7.67430 7.95032 8.06801 8.61460 9.18105 9.54486 10.06055 10.76008 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.001821 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.009401 B =15370.799229 C =16971.133596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.092 0.908 4 C -0.125 4.125 5 C -0.118 4.118 6 C 0.060 3.940 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.565 5.565 12 C -0.298 4.298 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.282 1.282 20 N -0.718 5.718 21 C 0.579 3.421 22 O -0.536 6.536 23 C -0.154 4.154 24 C -0.086 4.086 25 C -0.237 4.237 26 S 0.189 5.811 27 C -0.212 4.212 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.348 0.652 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.398 0.602 43 H 0.154 0.846 44 H 0.170 0.830 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.962 -0.759 -19.464 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.164 4.164 5 C -0.156 4.156 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.181 4.181 15 N -0.544 5.544 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.208 1.208 20 N -0.370 5.370 21 C 0.365 3.635 22 O -0.414 6.414 23 C -0.173 4.173 24 C -0.115 4.115 25 C -0.372 4.372 26 S 0.454 5.546 27 C -0.351 4.351 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.167 0.833 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.232 0.768 43 H 0.172 0.828 44 H 0.188 0.812 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.189 -0.329 -20.240 28.589 hybrid contribution 0.154 -0.443 1.116 1.211 sum -20.035 -0.772 -19.124 27.707 Atomic orbital electron populations 1.22179 0.95185 1.02085 1.02703 1.21036 0.93850 0.97892 0.83415 0.88973 1.21880 0.96366 1.00915 0.97200 1.21563 0.93907 1.02394 0.97686 1.21975 0.88800 0.97752 0.98478 1.60046 1.03666 1.61147 1.05422 1.21669 0.95211 0.96608 0.94689 1.19834 0.88062 0.84711 0.84805 1.90524 1.71141 1.45892 1.39127 1.41876 1.07433 1.48502 1.22329 1.19758 0.81510 1.32686 1.08820 0.87874 1.25271 1.00731 0.96623 0.95428 1.69623 1.36595 1.36021 1.12131 0.85794 0.82200 0.77960 0.78363 1.19206 1.20728 1.20780 1.45946 1.67567 1.13971 1.09511 1.17589 0.77271 0.86236 0.82446 1.90798 1.50157 1.15362 1.85045 1.20343 1.08164 0.93221 0.95555 1.21151 0.99073 1.01223 0.90012 1.25550 1.10155 0.97087 1.04363 1.83166 1.61767 1.10602 0.99047 1.25697 1.05622 0.99516 1.04223 0.91387 0.92090 0.92531 0.89910 0.91450 0.92075 0.90662 0.91136 0.95799 0.83297 0.89632 0.94002 0.77469 0.91942 0.76781 0.82831 0.81240 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.48 37.16 0.35 -0.86 16 2 C 0.14 1.19 2.57 -67.93 -0.17 1.01 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 4 C -0.13 -0.91 4.75 -26.73 -0.13 -1.04 16 5 C -0.12 -1.17 5.36 -26.73 -0.14 -1.31 16 6 C 0.06 0.70 5.69 -3.82 -0.02 0.68 16 7 N -0.67 -10.94 6.13 -115.05 -0.70 -11.64 16 8 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 9 C 0.44 10.56 7.82 -10.99 -0.09 10.47 16 10 O -0.58 -16.12 15.78 5.55 0.09 -16.03 16 11 N -0.56 -14.46 5.29 -10.97 -0.06 -14.52 16 12 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 13 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 14 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 15 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 16 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 N -0.72 -5.97 4.50 -54.95 -0.25 -6.22 16 21 C 0.58 6.37 7.75 -12.63 -0.10 6.27 16 22 O -0.54 -7.79 16.46 5.24 0.09 -7.70 16 23 C -0.15 -1.44 5.98 -104.63 -0.63 -2.06 16 24 C -0.09 -0.75 10.10 -39.02 -0.39 -1.15 16 25 C -0.24 -1.59 11.12 28.86 0.32 -1.27 16 26 S 0.19 1.14 23.02 -107.50 -2.48 -1.34 16 27 C -0.21 -1.48 10.38 29.93 0.31 -1.17 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.61 7.75 -51.94 -0.40 0.21 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.35 5.85 8.43 -39.30 -0.33 5.52 16 38 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.40 2.39 7.10 -40.82 -0.29 2.10 16 43 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 44 H 0.17 0.74 8.06 -52.48 -0.42 0.31 16 45 H 0.17 0.78 7.01 -52.48 -0.37 0.41 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -34.40 396.23 -9.29 -43.69 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.69 Total: 13.21 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.96 Total: 2.37 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.29 Total: -56.30 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.48 Total: -1.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.40 -9.29 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283124389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.712 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds