Wall clock time and date at job start Sat Apr 11 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46950 * 2 1 4 4 C 1.52996 * 109.46980 * 239.99964 * 2 1 3 5 5 N 1.46499 * 109.46974 * 184.99913 * 4 2 1 6 6 C 1.46506 * 120.00327 * 269.99884 * 5 4 2 7 7 C 1.34777 * 120.00065 * 89.99944 * 5 4 2 8 8 O 1.21283 * 120.00118 * 0.02562 * 7 5 4 9 9 C 1.50700 * 120.00075 * 179.97438 * 7 5 4 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 5 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21703 * 120.00193 * 359.72118 * 12 11 10 14 14 C 1.46586 * 119.99782 * 179.72446 * 12 11 10 15 15 C 1.36647 * 125.45923 * 179.97438 * 14 12 11 16 16 C 1.37473 * 113.29745 * 180.02562 * 15 14 12 17 17 C 1.33816 * 115.10124 * 0.02562 * 16 15 14 18 18 S 1.70620 * 110.95482 * 359.72085 * 17 16 15 19 19 N 1.46503 * 109.47277 * 119.99957 * 2 1 3 20 20 C 1.36932 * 119.99912 * 275.00273 * 19 2 1 21 21 H 1.07998 * 120.00729 * 359.97438 * 20 19 2 22 22 C 1.38815 * 120.00127 * 179.97438 * 20 19 2 23 23 N 1.31615 * 120.00343 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99740 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47119 * 89.99989 * 24 22 20 26 26 H 1.48498 * 109.47128 * 209.99934 * 24 22 20 27 27 H 1.48497 * 109.47064 * 329.99908 * 24 22 20 28 28 H 1.09004 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47077 * 300.00130 * 1 2 3 30 30 H 1.08997 * 109.47338 * 59.99646 * 1 2 3 31 31 H 1.08996 * 109.47030 * 65.00096 * 4 2 1 32 32 H 1.09000 * 109.47198 * 304.99611 * 4 2 1 33 33 H 1.08998 * 109.46913 * 270.00152 * 6 5 4 34 34 H 1.09001 * 109.46578 * 30.00263 * 6 5 4 35 35 H 1.08999 * 109.46905 * 149.99647 * 6 5 4 36 36 H 1.08995 * 109.47322 * 60.00554 * 9 7 5 37 37 H 1.09006 * 109.46960 * 300.00111 * 9 7 5 38 38 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 39 39 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 40 40 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 41 41 H 1.08000 * 123.34725 * 359.97438 * 15 14 12 42 42 H 1.07994 * 122.44962 * 180.02562 * 16 15 14 43 43 H 1.07996 * 124.52401 * 180.02562 * 17 16 15 44 44 H 0.97003 * 120.00069 * 94.99508 * 19 2 1 45 45 H 0.96999 * 120.00169 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3343 0.2341 -1.7613 7 6 4.0757 -1.8986 -0.6115 8 8 3.3851 -2.7768 -0.1394 9 6 5.5776 -2.0070 -0.5517 10 6 5.9674 -3.3093 0.1505 11 7 7.4274 -3.4144 0.2092 12 6 8.0031 -4.4896 0.7829 13 8 7.3100 -5.3707 1.2567 14 6 9.4640 -4.5976 0.8363 15 6 10.1626 -5.6337 1.3892 16 6 11.5257 -5.4781 1.3023 17 6 11.9315 -4.3542 0.7000 18 16 10.5982 -3.4176 0.1938 19 7 2.0184 -0.6906 1.1962 20 6 2.1491 -0.0075 2.3757 21 1 1.8926 1.0405 2.4242 22 6 2.6114 -0.6619 3.5093 23 7 2.7375 -0.0053 4.6429 24 14 3.0544 -2.4748 3.4257 25 1 4.4870 -2.6180 3.0619 26 1 2.8144 -3.1045 4.7490 27 1 2.2139 -3.1429 2.3999 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7516 -0.1583 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 4.5424 0.0093 -2.8073 34 1 3.8090 1.1866 -1.6918 35 1 5.2721 0.2953 -1.2092 36 1 5.9812 -1.1600 0.0029 37 1 5.9826 -2.0050 -1.5637 38 1 5.5638 -4.1563 -0.4045 39 1 5.5623 -3.3118 1.1624 40 1 7.9798 -2.7123 -0.1687 41 1 9.6907 -6.4892 1.8495 42 1 12.2184 -6.2095 1.6916 43 1 12.9650 -4.0792 0.5496 44 1 2.2490 -1.6318 1.1527 45 1 3.0602 -0.4627 5.4351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283712998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:54 Heat of formation + Delta-G solvation = -18.742211 kcal Electronic energy + Delta-G solvation = -27343.146623 eV Core-core repulsion = 23488.176985 eV Total energy + Delta-G solvation = -3854.969638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.07711 -39.57039 -37.76723 -36.33615 -35.13324 -34.56780 -32.06744 -31.35069 -29.83197 -29.21273 -27.17644 -26.17860 -25.11156 -23.55865 -22.96760 -21.44447 -20.14556 -19.63344 -19.16733 -18.50470 -17.67769 -16.97088 -16.25416 -16.11323 -15.93477 -15.61318 -15.20949 -15.00953 -14.61964 -14.16960 -13.76523 -13.61235 -13.25287 -13.17342 -13.06173 -12.92422 -12.63508 -12.57397 -12.50058 -12.33077 -12.11297 -11.87248 -11.55260 -11.45976 -11.37190 -11.33354 -10.75033 -10.59833 -10.48622 -10.23784 -9.87543 -9.55883 -9.41561 -9.33148 -9.08555 -8.93004 -8.80468 -8.30951 -7.12237 -5.66756 -3.00095 0.20959 1.13427 1.53327 2.11860 2.78336 2.92088 3.06937 3.37140 3.55531 3.63985 3.76011 4.49638 4.63404 4.75127 4.77027 4.78872 4.98089 5.00565 5.15284 5.15982 5.26188 5.36166 5.39371 5.59857 5.62878 5.65650 5.72446 5.82446 5.85912 5.91293 5.92369 5.99492 6.07841 6.18568 6.24260 6.26485 6.47336 6.69419 6.80591 7.05288 7.26878 7.60295 8.02109 8.11861 8.45042 8.54198 9.38047 10.10764 10.32658 11.51104 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013739 B = 0.003078 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.478965 B = 9094.056488 C =10161.135872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.052 0.948 4 C 0.106 3.894 5 N -0.605 5.605 6 C 0.081 3.919 7 C 0.525 3.475 8 O -0.529 6.529 9 C -0.152 4.152 10 C 0.130 3.870 11 N -0.725 5.725 12 C 0.588 3.412 13 O -0.521 6.521 14 C -0.261 4.261 15 C -0.057 4.057 16 C -0.149 4.149 17 C -0.231 4.231 18 S 0.198 5.802 19 N -0.748 5.748 20 C -0.239 4.239 21 H 0.086 0.914 22 C 0.005 3.995 23 N -0.937 5.937 24 Si 0.878 3.122 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.266 1.266 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.396 0.604 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.169 0.831 44 H 0.376 0.624 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.779 -3.310 -17.375 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.017 4.017 5 N -0.338 5.338 6 C -0.063 4.063 7 C 0.312 3.688 8 O -0.406 6.406 9 C -0.192 4.192 10 C 0.007 3.993 11 N -0.377 5.377 12 C 0.373 3.627 13 O -0.398 6.398 14 C -0.382 4.382 15 C -0.091 4.091 16 C -0.180 4.180 17 C -0.369 4.369 18 S 0.464 5.536 19 N -0.395 5.395 20 C -0.369 4.369 21 H 0.103 0.897 22 C -0.190 4.190 23 N -0.586 5.586 24 Si 0.708 3.292 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.191 1.191 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.230 0.770 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.187 0.813 44 H 0.214 0.786 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.756 -2.854 -17.376 24.307 hybrid contribution 0.960 -2.041 0.770 2.384 sum 17.716 -4.895 -16.607 24.771 Atomic orbital electron populations 1.22385 0.98602 1.01059 1.00472 1.20593 0.92205 0.95791 0.86510 0.93024 1.21927 0.78918 1.02309 0.98545 1.47584 1.07031 1.20777 1.58371 1.21757 0.95753 0.91215 0.97530 1.20052 0.89596 0.81710 0.77405 1.90705 1.64614 1.39924 1.45310 1.21817 0.94728 0.99854 1.02846 1.21204 0.78020 0.96998 1.03091 1.45814 1.08341 1.22747 1.60799 1.16922 0.85395 0.82150 0.78234 1.90879 1.63260 1.39531 1.46142 1.24687 0.97131 1.02503 1.13833 1.20853 0.92920 0.98299 0.96990 1.20070 0.95524 0.98990 1.03397 1.25318 1.04502 1.00352 1.06695 1.82951 0.94421 1.22037 1.54146 1.43061 1.79365 1.10541 1.06499 1.19039 1.36592 0.95265 0.86044 0.89661 1.24607 1.01522 0.97379 0.95507 1.69712 1.53049 1.35578 1.00230 0.86655 0.79110 0.86881 0.76533 1.21147 1.22388 1.19126 0.93439 0.92163 0.94276 0.90583 0.90141 0.92994 0.90803 0.91190 0.87855 0.88535 0.90115 0.89670 0.77037 0.82763 0.83618 0.81329 0.78646 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.16 3.07 3.20 -67.93 -0.22 2.85 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.58 16 4 C 0.11 1.64 5.14 -4.04 -0.02 1.61 16 5 N -0.60 -8.89 2.77 -181.57 -0.50 -9.40 16 6 C 0.08 0.81 10.24 59.85 0.61 1.42 16 7 C 0.53 8.91 6.97 -10.98 -0.08 8.84 16 8 O -0.53 -11.32 13.15 5.55 0.07 -11.25 16 9 C -0.15 -1.95 4.37 -27.88 -0.12 -2.07 16 10 C 0.13 2.02 4.96 -4.04 -0.02 2.00 16 11 N -0.73 -9.37 5.55 -61.64 -0.34 -9.71 16 12 C 0.59 8.82 7.78 -12.89 -0.10 8.72 16 13 O -0.52 -10.07 16.84 5.19 0.09 -9.98 16 14 C -0.26 -3.06 6.45 -36.79 -0.24 -3.29 16 15 C -0.06 -0.61 10.01 -40.44 -0.40 -1.02 16 16 C -0.15 -1.20 10.15 -41.41 -0.42 -1.62 16 17 C -0.23 -1.64 10.92 29.18 0.32 -1.32 16 18 S 0.20 1.56 22.16 -107.50 -2.38 -0.83 16 19 N -0.75 -18.54 4.33 -53.43 -0.23 -18.77 16 20 C -0.24 -6.97 10.41 -15.06 -0.16 -7.13 16 21 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 22 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 23 N -0.94 -30.58 13.97 55.49 0.78 -29.80 16 24 Si 0.88 24.83 27.59 -169.99 -4.69 20.14 16 25 H -0.28 -7.96 6.69 56.52 0.38 -7.58 16 26 H -0.30 -8.52 7.11 56.52 0.40 -8.11 16 27 H -0.27 -7.56 6.52 56.52 0.37 -7.19 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.88 8.07 -51.93 -0.42 0.47 16 32 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.07 0.63 6.44 -51.93 -0.33 0.30 16 36 H 0.10 1.24 7.40 -51.93 -0.38 0.85 16 37 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.08 1.30 8.10 -51.92 -0.42 0.88 16 39 H 0.09 1.72 7.69 -51.93 -0.40 1.32 16 40 H 0.40 3.69 7.59 -40.82 -0.31 3.38 16 41 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.38 9.74 2.88 -40.82 -0.12 9.62 16 45 H 0.26 8.09 8.31 -40.82 -0.34 7.75 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -39.34 385.23 -8.60 -47.94 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.60 Total: 9.34 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.59 Total: 6.52 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -0.30 Total: -67.69 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.16 Total: -21.23 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.69 Total: 20.14 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.38 Total: -0.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.34 -8.60 -47.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283712998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.199 kcal (2) G-P(sol) polarization free energy of solvation -39.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds