Wall clock time and date at job start Sat Apr 11 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 C 1.52998 * 109.47463 * 239.99710 * 2 1 3 5 5 N 1.46497 * 109.47316 * 185.00112 * 4 2 1 6 6 C 1.46508 * 119.99666 * 270.00069 * 5 4 2 7 7 C 1.34777 * 119.99935 * 90.00132 * 5 4 2 8 8 O 1.21269 * 119.99905 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99578 * 179.97438 * 7 5 4 10 10 C 1.50704 * 109.46762 * 179.97438 * 9 7 5 11 11 C 1.34845 * 125.88833 * 85.00052 * 10 9 7 12 12 C 1.40883 * 107.41891 * 180.02562 * 11 10 9 13 13 C 1.34854 * 107.41814 * 0.02562 * 12 11 10 14 14 N 1.36343 * 108.21624 * 0.26031 * 13 12 11 15 15 H 0.96994 * 125.63652 * 179.73195 * 14 13 12 16 16 N 1.46497 * 109.46942 * 119.99700 * 2 1 3 17 17 C 1.34779 * 120.00207 * 275.00240 * 16 2 1 18 18 O 1.21279 * 119.99802 * 0.02562 * 17 16 2 19 19 C 1.50703 * 120.00034 * 180.02562 * 17 16 2 20 20 S 1.80999 * 109.46870 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99894 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00034 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31638 * 119.99956 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47369 * 59.99913 * 25 23 21 27 27 H 1.48495 * 109.47442 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46955 * 299.99976 * 25 23 21 29 29 H 1.09002 * 109.47341 * 60.00158 * 1 2 3 30 30 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47516 * 300.00069 * 1 2 3 32 32 H 1.09010 * 109.46689 * 64.99733 * 4 2 1 33 33 H 1.08997 * 109.47073 * 305.00801 * 4 2 1 34 34 H 1.08999 * 109.47154 * 269.99871 * 6 5 4 35 35 H 1.08995 * 109.47114 * 29.99887 * 6 5 4 36 36 H 1.09003 * 109.46373 * 150.00124 * 6 5 4 37 37 H 1.09007 * 109.46806 * 60.00106 * 9 7 5 38 38 H 1.08998 * 109.47448 * 300.00182 * 9 7 5 39 39 H 1.08010 * 126.29149 * 0.02562 * 11 10 9 40 40 H 1.08008 * 126.29481 * 179.97438 * 12 11 10 41 41 H 1.08002 * 125.89007 * 179.97438 * 13 12 11 42 42 H 0.96996 * 120.00023 * 95.00155 * 16 2 1 43 43 H 1.08996 * 109.47173 * 299.99669 * 19 17 16 44 44 H 1.09004 * 109.47001 * 60.00097 * 19 17 16 45 45 H 0.96999 * 120.00182 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3343 0.2341 -1.7612 7 6 4.0757 -1.8987 -0.6114 8 8 3.3851 -2.7763 -0.1386 9 6 5.5777 -2.0070 -0.5515 10 6 5.9615 -3.2892 0.1413 11 6 6.0717 -4.5002 -0.4415 12 6 6.4487 -5.4171 0.5595 13 6 6.5541 -4.7316 1.7160 14 7 6.2502 -3.4260 1.4667 15 1 6.2434 -2.7121 2.1233 16 7 2.0183 -0.6905 1.1962 17 6 2.1469 -0.0182 2.3572 18 8 1.8580 1.1585 2.4117 19 6 2.6498 -0.7284 3.5875 20 16 2.7111 0.4348 4.9729 21 6 3.3141 -0.6304 6.2403 22 1 3.5235 -1.6668 6.0204 23 6 3.5200 -0.1376 7.5214 24 7 3.2642 1.1256 7.7897 25 14 4.1598 -1.2666 8.8649 26 1 5.4867 -1.8039 8.4698 27 1 4.2929 -0.5031 10.1316 28 1 3.2092 -2.3905 9.0614 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7516 -0.1583 -2.1370 33 1 1.6054 -1.7198 -1.2951 34 1 4.5425 0.0093 -2.8072 35 1 3.8090 1.1866 -1.6918 36 1 5.2722 0.2952 -1.2090 37 1 5.9812 -1.1598 0.0031 38 1 5.9827 -2.0050 -1.5634 39 1 5.9020 -4.7258 -1.4840 40 1 6.6209 -6.4750 0.4254 41 1 6.8272 -5.1462 2.6751 42 1 2.2489 -1.6317 1.1527 43 1 1.9776 -1.5507 3.8326 44 1 3.6492 -1.1202 3.3980 45 1 3.4085 1.4701 8.6849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001287631269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:00 Heat of formation + Delta-G solvation = -27.039369 kcal Electronic energy + Delta-G solvation = -27530.147493 eV Core-core repulsion = 23674.818063 eV Total energy + Delta-G solvation = -3855.329430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26453 -40.21603 -38.92120 -36.37056 -34.74046 -32.44319 -32.19451 -31.31463 -30.89139 -28.57762 -27.86627 -27.09606 -25.50181 -25.35967 -21.93503 -20.64690 -20.34277 -20.14464 -19.57877 -17.90957 -17.62053 -17.29661 -16.50936 -16.30931 -16.18785 -15.26915 -14.83508 -14.81232 -14.23839 -14.10101 -13.99920 -13.62185 -13.52026 -13.33207 -13.22793 -13.21533 -12.92680 -12.72881 -12.61117 -12.48740 -12.27963 -12.14233 -11.98114 -11.82358 -11.67100 -11.17836 -11.05442 -11.05181 -10.77949 -10.07342 -9.83202 -9.35206 -9.07899 -9.01848 -8.83350 -8.73168 -8.24694 -8.05810 -6.51057 -6.22942 -3.93415 2.13338 2.36814 2.71715 3.05173 3.08692 3.15313 3.21707 3.26323 3.31962 3.34413 3.78861 4.19559 4.33384 4.57076 4.62910 4.72568 4.84891 4.94996 5.09090 5.12050 5.13728 5.15535 5.20472 5.24754 5.30159 5.37298 5.47823 5.49595 5.58786 5.68918 5.71725 5.89134 5.98615 6.06094 6.16155 6.20945 6.26467 6.27966 6.78546 6.96636 7.03364 7.13363 7.57867 7.58241 7.82000 7.97561 8.33787 8.70086 9.22253 10.84401 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008673 B = 0.003953 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.821130 B = 7080.869135 C = 9654.285760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.087 0.913 4 C 0.107 3.893 5 N -0.616 5.616 6 C 0.075 3.925 7 C 0.518 3.482 8 O -0.525 6.525 9 C -0.070 4.070 10 C 0.027 3.973 11 C -0.180 4.180 12 C -0.205 4.205 13 C -0.005 4.005 14 N -0.549 5.549 15 H 0.415 0.585 16 N -0.731 5.731 17 C 0.531 3.469 18 O -0.523 6.523 19 C -0.150 4.150 20 S -0.058 6.058 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.275 1.275 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.163 0.837 42 H 0.406 0.594 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 -6.374 -22.934 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 H 0.105 0.895 4 C -0.017 4.017 5 N -0.349 5.349 6 C -0.068 4.068 7 C 0.306 3.694 8 O -0.400 6.400 9 C -0.111 4.111 10 C -0.086 4.086 11 C -0.205 4.205 12 C -0.230 4.230 13 C -0.137 4.137 14 N -0.143 5.143 15 H 0.252 0.748 16 N -0.389 5.389 17 C 0.317 3.683 18 O -0.398 6.398 19 C -0.300 4.300 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.180 0.820 42 H 0.245 0.755 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.767 -4.634 -22.367 23.151 hybrid contribution 0.810 -2.123 1.108 2.528 sum 4.577 -6.757 -21.259 22.772 Atomic orbital electron populations 1.22133 0.94824 1.02333 1.02835 1.21286 0.94343 0.97722 0.84586 0.89533 1.21878 0.79557 1.02705 0.97526 1.47812 1.06716 1.21451 1.58944 1.21875 0.95706 0.90823 0.98419 1.20619 0.90564 0.80993 0.77269 1.90668 1.64517 1.39205 1.45628 1.20144 0.92770 0.95540 1.02600 1.19435 1.09294 0.95755 0.84117 1.20541 1.08872 0.91765 0.99358 1.20826 1.10056 0.99276 0.92798 1.21843 1.08255 0.83379 1.00183 1.41958 1.54142 1.09797 1.08446 0.74850 1.46330 1.68701 1.14869 1.08999 1.20279 0.76951 0.87166 0.83909 1.90674 1.48783 1.15786 1.84558 1.23497 1.03238 1.04779 0.98529 1.85339 1.86398 1.12739 0.98709 1.22825 1.50957 0.98142 0.96490 0.91113 1.24975 0.95102 0.95516 0.97869 1.70011 1.45496 1.13214 1.21591 0.86245 0.79284 0.80082 0.80010 1.20006 1.20764 1.19898 0.91811 0.92337 0.91323 0.89003 0.89160 0.92195 0.90593 0.90812 0.88193 0.86906 0.85285 0.84970 0.81971 0.75540 0.89442 0.90029 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 2 C 0.13 1.52 2.88 -67.93 -0.20 1.33 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 4 C 0.11 0.94 5.14 -4.04 -0.02 0.92 16 5 N -0.62 -5.41 2.77 -181.57 -0.50 -5.92 16 6 C 0.07 0.42 10.24 59.85 0.61 1.03 16 7 C 0.52 5.64 6.96 -10.98 -0.08 5.57 16 8 O -0.52 -7.55 13.35 5.57 0.07 -7.48 16 9 C -0.07 -0.61 4.79 -29.03 -0.14 -0.75 16 10 C 0.03 0.31 5.66 -81.79 -0.46 -0.15 16 11 C -0.18 -2.14 10.76 -39.79 -0.43 -2.57 16 12 C -0.20 -2.41 10.86 -39.78 -0.43 -2.85 16 13 C 0.00 -0.05 11.94 -16.75 -0.20 -0.25 16 14 N -0.55 -6.34 6.08 -9.12 -0.06 -6.39 16 15 H 0.41 4.35 8.96 -40.82 -0.37 3.98 16 16 N -0.73 -11.10 4.48 -53.81 -0.24 -11.34 16 17 C 0.53 10.43 7.81 -10.98 -0.09 10.34 16 18 O -0.52 -11.94 15.52 5.56 0.09 -11.86 16 19 C -0.15 -3.21 6.16 36.01 0.22 -2.98 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 25 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.55 8.07 -51.92 -0.42 0.13 16 33 H 0.09 0.89 7.42 -51.93 -0.39 0.50 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 36 H 0.07 0.37 6.44 -51.93 -0.33 0.03 16 37 H 0.10 0.75 7.40 -51.93 -0.38 0.36 16 38 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.41 6.19 5.82 -40.82 -0.24 5.95 16 43 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 44 H 0.08 1.63 8.14 -51.91 -0.42 1.21 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -37.14 391.57 -8.61 -45.75 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.71 Total: 9.03 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.66 Total: -4.88 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.07 Total: -49.12 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.16 Total: -19.34 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.14 -8.61 -45.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287631269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.706 kcal (2) G-P(sol) polarization free energy of solvation -37.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds