Wall clock time and date at job start Sat Apr 11 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 C 1.52998 * 109.47463 * 239.99710 * 2 1 3 5 5 N 1.46497 * 109.47316 * 185.00112 * 4 2 1 6 6 C 1.46508 * 119.99666 * 270.00069 * 5 4 2 7 7 C 1.34777 * 119.99935 * 90.00132 * 5 4 2 8 8 O 1.21269 * 119.99905 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99578 * 179.97438 * 7 5 4 10 10 C 1.50704 * 109.46762 * 179.97438 * 9 7 5 11 11 C 1.34845 * 125.88833 * 85.00052 * 10 9 7 12 12 C 1.40883 * 107.41891 * 180.02562 * 11 10 9 13 13 C 1.34854 * 107.41814 * 0.02562 * 12 11 10 14 14 N 1.36343 * 108.21624 * 0.26031 * 13 12 11 15 15 H 0.96994 * 125.63652 * 179.73195 * 14 13 12 16 16 N 1.46497 * 109.46942 * 119.99700 * 2 1 3 17 17 C 1.34779 * 120.00207 * 275.00240 * 16 2 1 18 18 O 1.21279 * 119.99802 * 0.02562 * 17 16 2 19 19 C 1.50703 * 120.00034 * 180.02562 * 17 16 2 20 20 S 1.80999 * 109.46870 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99894 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00034 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31638 * 119.99956 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47369 * 59.99913 * 25 23 21 27 27 H 1.48495 * 109.47442 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46955 * 299.99976 * 25 23 21 29 29 H 1.09002 * 109.47341 * 60.00158 * 1 2 3 30 30 H 1.08999 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47516 * 300.00069 * 1 2 3 32 32 H 1.09010 * 109.46689 * 64.99733 * 4 2 1 33 33 H 1.08997 * 109.47073 * 305.00801 * 4 2 1 34 34 H 1.08999 * 109.47154 * 269.99871 * 6 5 4 35 35 H 1.08995 * 109.47114 * 29.99887 * 6 5 4 36 36 H 1.09003 * 109.46373 * 150.00124 * 6 5 4 37 37 H 1.09007 * 109.46806 * 60.00106 * 9 7 5 38 38 H 1.08998 * 109.47448 * 300.00182 * 9 7 5 39 39 H 1.08010 * 126.29149 * 0.02562 * 11 10 9 40 40 H 1.08008 * 126.29481 * 179.97438 * 12 11 10 41 41 H 1.08002 * 125.89007 * 179.97438 * 13 12 11 42 42 H 0.96996 * 120.00023 * 95.00155 * 16 2 1 43 43 H 1.08996 * 109.47173 * 299.99669 * 19 17 16 44 44 H 1.09004 * 109.47001 * 60.00097 * 19 17 16 45 45 H 0.96999 * 120.00182 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3343 0.2341 -1.7612 7 6 4.0757 -1.8987 -0.6114 8 8 3.3851 -2.7763 -0.1386 9 6 5.5777 -2.0070 -0.5515 10 6 5.9615 -3.2892 0.1413 11 6 6.0717 -4.5002 -0.4415 12 6 6.4487 -5.4171 0.5595 13 6 6.5541 -4.7316 1.7160 14 7 6.2502 -3.4260 1.4667 15 1 6.2434 -2.7121 2.1233 16 7 2.0183 -0.6905 1.1962 17 6 2.1469 -0.0182 2.3572 18 8 1.8580 1.1585 2.4117 19 6 2.6498 -0.7284 3.5875 20 16 2.7111 0.4348 4.9729 21 6 3.3141 -0.6304 6.2403 22 1 3.5235 -1.6668 6.0204 23 6 3.5200 -0.1376 7.5214 24 7 3.2642 1.1256 7.7897 25 14 4.1598 -1.2666 8.8649 26 1 5.4867 -1.8039 8.4698 27 1 4.2929 -0.5031 10.1316 28 1 3.2092 -2.3905 9.0614 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7516 -0.1583 -2.1370 33 1 1.6054 -1.7198 -1.2951 34 1 4.5425 0.0093 -2.8072 35 1 3.8090 1.1866 -1.6918 36 1 5.2722 0.2952 -1.2090 37 1 5.9812 -1.1598 0.0031 38 1 5.9827 -2.0050 -1.5634 39 1 5.9020 -4.7258 -1.4840 40 1 6.6209 -6.4750 0.4254 41 1 6.8272 -5.1462 2.6751 42 1 2.2489 -1.6317 1.1527 43 1 1.9776 -1.5507 3.8326 44 1 3.6492 -1.1202 3.3980 45 1 3.4085 1.4701 8.6849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001287631269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:59 Heat of formation + Delta-G solvation = -52.592905 kcal Electronic energy + Delta-G solvation = -27531.255578 eV Core-core repulsion = 23674.818063 eV Total energy + Delta-G solvation = -3856.437514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09270 -41.20607 -40.22977 -37.35894 -35.75568 -34.62407 -33.15215 -32.45982 -31.74972 -30.11613 -28.59576 -27.76790 -27.69377 -26.12518 -23.05518 -21.58648 -21.46735 -21.13996 -20.38923 -19.85181 -18.45930 -18.23491 -17.74468 -17.53378 -16.99637 -16.91601 -16.39237 -16.29339 -15.90877 -15.02792 -14.86420 -14.76436 -14.60457 -14.44506 -14.37273 -14.12463 -13.92507 -13.85951 -13.41294 -13.31528 -13.30147 -13.20906 -13.10177 -12.96372 -12.90988 -12.77542 -12.63745 -12.42058 -12.12840 -11.78217 -11.16973 -10.99461 -10.89599 -10.34978 -10.17722 -9.70725 -9.63641 -8.90609 -8.71293 -8.38313 -6.16900 1.21996 1.30835 1.40099 1.42474 1.52303 1.54308 1.59931 1.98096 2.21813 2.23613 2.34354 2.54425 2.95609 3.27874 3.64300 3.75423 3.86544 3.96098 4.08719 4.15192 4.17824 4.25298 4.38154 4.39309 4.46319 4.49119 4.54381 4.66274 4.67791 4.71833 4.81953 4.87324 4.97756 5.01621 5.21791 5.36118 5.36988 5.43626 5.43884 5.60044 6.12464 6.15512 6.26576 6.34181 6.46434 6.76108 7.02713 7.13250 7.23165 8.70643 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008673 B = 0.003953 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.821130 B = 7080.869135 C = 9654.285760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.077 0.923 4 C 0.113 3.887 5 N -0.613 5.613 6 C 0.067 3.933 7 C 0.511 3.489 8 O -0.567 6.567 9 C -0.067 4.067 10 C 0.021 3.979 11 C -0.201 4.201 12 C -0.222 4.222 13 C -0.020 4.020 14 N -0.555 5.555 15 H 0.417 0.583 16 N -0.710 5.710 17 C 0.534 3.466 18 O -0.560 6.560 19 C -0.128 4.128 20 S -0.134 6.134 21 C -0.551 4.551 22 H 0.077 0.923 23 C 0.019 3.981 24 N -0.909 5.909 25 Si 0.995 3.005 26 H -0.261 1.261 27 H -0.276 1.276 28 H -0.265 1.265 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.179 0.821 42 H 0.409 0.591 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -7.289 -24.627 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.095 0.905 4 C -0.010 4.010 5 N -0.345 5.345 6 C -0.075 4.075 7 C 0.300 3.700 8 O -0.446 6.446 9 C -0.107 4.107 10 C -0.093 4.093 11 C -0.226 4.226 12 C -0.246 4.246 13 C -0.151 4.151 14 N -0.150 5.150 15 H 0.254 0.746 16 N -0.367 5.367 17 C 0.319 3.681 18 O -0.438 6.438 19 C -0.280 4.280 20 S 0.093 5.907 21 C -0.698 4.698 22 H 0.095 0.905 23 C -0.186 4.186 24 N -0.545 5.545 25 Si 0.817 3.183 26 H -0.185 1.185 27 H -0.200 1.200 28 H -0.190 1.190 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.196 0.804 42 H 0.248 0.752 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.548 -5.546 -24.126 25.169 hybrid contribution 0.534 -1.834 1.490 2.423 sum 5.081 -7.381 -22.635 24.345 Atomic orbital electron populations 1.22088 0.94025 1.02657 1.02853 1.21605 0.95045 0.97345 0.84352 0.90503 1.21891 0.79684 1.02470 0.96994 1.47929 1.06999 1.21498 1.58092 1.22147 0.95513 0.89954 0.99906 1.20997 0.91276 0.80934 0.76763 1.90648 1.65467 1.40858 1.47636 1.20251 0.91490 0.94689 1.04230 1.19866 1.08563 0.96763 0.84078 1.20816 1.09496 0.92214 1.00028 1.21131 1.10288 1.00084 0.93120 1.22221 1.08367 0.83547 1.00980 1.42088 1.54188 1.09943 1.08773 0.74597 1.46255 1.67006 1.14795 1.08666 1.19956 0.76968 0.86611 0.84559 1.90662 1.50811 1.17227 1.85143 1.23332 1.04464 1.03165 0.96998 1.85439 1.86761 1.16402 1.02061 1.23136 1.51236 0.98373 0.97097 0.90485 1.26067 0.94934 0.97163 1.00482 1.70161 1.46568 1.15376 1.22403 0.85054 0.79103 0.77779 0.76387 1.18515 1.20047 1.18999 0.88378 0.91829 0.94704 0.85058 0.89830 0.89490 0.90184 0.90121 0.86896 0.83890 0.84365 0.83885 0.80370 0.75177 0.88872 0.88508 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.48 71.98 0.68 -2.61 16 2 C 0.12 2.73 2.88 44.99 0.13 2.86 16 3 H 0.08 1.93 7.58 -2.38 -0.02 1.91 16 4 C 0.11 1.68 5.14 86.38 0.44 2.12 16 5 N -0.61 -9.10 2.77 -846.75 -2.35 -11.45 16 6 C 0.07 0.52 10.24 127.77 1.31 1.83 16 7 C 0.51 10.16 6.96 87.66 0.61 10.77 16 8 O -0.57 -15.73 13.35 -3.00 -0.04 -15.77 16 9 C -0.07 -1.01 4.79 29.10 0.14 -0.87 16 10 C 0.02 0.44 5.66 41.08 0.23 0.68 16 11 C -0.20 -4.60 10.76 22.14 0.24 -4.37 16 12 C -0.22 -5.11 10.86 22.14 0.24 -4.87 16 13 C -0.02 -0.44 11.94 83.21 0.99 0.56 16 14 N -0.56 -12.45 6.08 -182.76 -1.11 -13.56 16 15 H 0.42 8.54 8.96 -92.71 -0.83 7.71 16 16 N -0.71 -21.12 4.48 -442.53 -1.98 -23.10 16 17 C 0.53 21.11 7.81 87.66 0.68 21.79 16 18 O -0.56 -26.16 15.52 -3.03 -0.05 -26.21 16 19 C -0.13 -5.54 6.16 71.24 0.44 -5.11 16 20 S -0.13 -7.55 20.57 -56.49 -1.16 -8.71 16 21 C -0.55 -31.95 9.50 67.95 0.65 -31.31 16 22 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 23 C 0.02 1.07 5.49 84.86 0.47 1.54 16 24 N -0.91 -55.79 13.22 21.65 0.29 -55.50 16 25 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.13 0.98 8.07 -2.38 -0.02 0.96 16 33 H 0.08 1.44 7.42 -2.39 -0.02 1.42 16 34 H 0.09 0.26 8.14 -2.39 -0.02 0.25 16 35 H 0.08 0.60 8.07 -2.39 -0.02 0.58 16 36 H 0.08 0.54 6.44 -2.39 -0.02 0.53 16 37 H 0.11 1.42 7.40 -2.38 -0.02 1.41 16 38 H 0.14 1.26 8.11 -2.39 -0.02 1.24 16 39 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 41 H 0.18 3.17 8.06 -2.91 -0.02 3.14 16 42 H 0.41 12.14 5.82 -92.71 -0.54 11.60 16 43 H 0.09 3.89 8.14 -2.40 -0.02 3.87 16 44 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 45 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -83.20 391.57 2.52 -80.68 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -0.36 Total: 34.75 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 7.25 Total: -6.99 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -5.16 Total: -103.60 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.09 Total: -41.98 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.16 Total: -8.71 kcal Total: -83.20 2.52 -80.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287631269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.083 kcal (2) G-P(sol) polarization free energy of solvation -83.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds