Wall clock time and date at job start Sat Apr 11 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46873 * 2 1 4 4 C 1.52998 * 109.47457 * 120.00264 * 2 1 3 5 5 N 1.46497 * 109.47316 * 175.00242 * 4 2 1 6 6 C 1.46508 * 119.99666 * 270.00069 * 5 4 2 7 7 C 1.34777 * 119.99935 * 90.00132 * 5 4 2 8 8 O 1.21269 * 119.99905 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99578 * 179.97438 * 7 5 4 10 10 C 1.50704 * 109.46762 * 179.97438 * 9 7 5 11 11 C 1.34845 * 125.88833 * 85.00052 * 10 9 7 12 12 C 1.40883 * 107.41891 * 180.02562 * 11 10 9 13 13 C 1.34854 * 107.41814 * 0.02562 * 12 11 10 14 14 N 1.36343 * 108.21624 * 0.26031 * 13 12 11 15 15 H 0.96994 * 125.63652 * 179.73195 * 14 13 12 16 16 N 1.46500 * 109.47148 * 240.00384 * 2 1 3 17 17 C 1.34786 * 119.99977 * 85.00011 * 16 2 1 18 18 O 1.21286 * 119.99832 * 359.97438 * 17 16 2 19 19 C 1.50694 * 119.99840 * 180.02562 * 17 16 2 20 20 S 1.81004 * 109.46920 * 179.97438 * 19 17 16 21 21 C 1.76202 * 100.00137 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99769 * 359.97438 * 21 20 19 23 23 C 1.38794 * 120.00010 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00109 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00033 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47155 * 90.00536 * 25 23 21 27 27 H 1.48503 * 109.46972 * 209.99930 * 25 23 21 28 28 H 1.48499 * 109.47018 * 330.00329 * 25 23 21 29 29 H 1.08992 * 109.47185 * 299.99296 * 1 2 3 30 30 H 1.08997 * 109.47041 * 59.99740 * 1 2 3 31 31 H 1.09007 * 109.46975 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46689 * 54.99863 * 4 2 1 33 33 H 1.08997 * 109.47073 * 295.00931 * 4 2 1 34 34 H 1.08999 * 109.47154 * 269.99871 * 6 5 4 35 35 H 1.08995 * 109.47114 * 29.99887 * 6 5 4 36 36 H 1.09003 * 109.46373 * 150.00124 * 6 5 4 37 37 H 1.09007 * 109.46806 * 60.00106 * 9 7 5 38 38 H 1.08998 * 109.47448 * 300.00182 * 9 7 5 39 39 H 1.08010 * 126.29149 * 0.02562 * 11 10 9 40 40 H 1.08008 * 126.29481 * 179.97438 * 12 11 10 41 41 H 1.08002 * 125.89007 * 179.97438 * 13 12 11 42 42 H 0.97002 * 120.00220 * 264.99760 * 16 2 1 43 43 H 1.08995 * 109.47094 * 299.99376 * 19 17 16 44 44 H 1.09000 * 109.47580 * 59.99744 * 19 17 16 45 45 H 0.96998 * 120.00669 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5610 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1142 2.2362 9 6 5.7695 0.0408 1.6557 10 6 6.3868 1.2516 2.3070 11 6 6.6247 1.4050 3.6254 12 6 7.2067 2.6755 3.8039 13 6 7.3017 3.2504 2.5877 14 7 6.7944 2.3836 1.6657 15 1 6.7357 2.5446 0.7110 16 7 2.0183 -0.6905 -1.1962 17 6 2.1471 -0.0180 -2.3572 18 8 1.8582 1.1586 -2.4117 19 6 2.6489 -0.7285 -3.5878 20 16 2.7092 0.4345 -4.9734 21 6 3.3125 -0.6306 -6.2409 22 1 3.5226 -1.6668 -6.0207 23 6 3.5187 -0.1375 -7.5218 24 7 3.9689 -0.9333 -8.4687 25 14 3.1559 1.6550 -7.9023 26 1 4.3746 2.4686 -7.6613 27 1 2.7464 1.7862 -9.3237 28 1 2.0585 2.1351 -7.0245 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7199 1.2950 33 1 1.7516 -0.1585 2.1369 34 1 4.2824 -2.7688 1.3094 35 1 3.4758 -2.3721 -0.2269 36 1 5.0852 -1.7019 0.1323 37 1 6.0886 -0.0138 0.6148 38 1 6.0902 -0.8584 2.1817 39 1 6.4089 0.6859 4.4019 40 1 7.5186 3.1097 4.7424 41 1 7.7054 4.2305 2.3805 42 1 2.2491 -1.6317 -1.1527 43 1 3.6480 -1.1210 -3.3987 44 1 1.9760 -1.5503 -3.8327 45 1 4.1127 -0.5889 -9.3641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001287631367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:03 Heat of formation + Delta-G solvation = -23.308378 kcal Electronic energy + Delta-G solvation = -26907.374960 eV Core-core repulsion = 23052.207318 eV Total energy + Delta-G solvation = -3855.167642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33733 -40.23257 -39.18512 -36.56970 -34.64982 -32.49536 -32.36895 -31.53929 -31.00545 -28.85928 -27.85473 -27.16890 -25.67076 -25.41974 -22.06544 -20.76773 -20.49780 -20.40302 -19.65534 -17.94472 -17.69202 -17.41766 -16.58735 -16.37471 -16.25585 -15.47550 -15.06739 -14.97273 -14.43388 -14.07809 -14.03206 -13.67410 -13.62502 -13.41455 -13.37432 -13.23518 -13.10860 -12.83640 -12.71313 -12.62228 -12.37915 -12.19940 -12.08952 -11.97318 -11.78689 -11.31314 -11.23629 -11.05423 -10.65758 -10.08347 -9.90501 -9.55528 -9.19535 -9.05130 -8.93641 -8.83954 -8.55214 -8.15595 -6.97532 -6.34102 -4.06162 2.04507 2.38730 2.63721 2.73477 2.93465 2.98496 3.22822 3.26565 3.29983 3.46566 3.60205 4.28321 4.28770 4.46979 4.52259 4.68422 4.70948 4.79381 4.84951 5.05013 5.06156 5.08729 5.10871 5.12017 5.23823 5.29809 5.32709 5.38670 5.43118 5.59160 5.60131 5.68265 5.91900 5.93692 6.00699 6.11154 6.18486 6.22479 6.52807 6.87020 6.98590 7.04448 7.47212 7.55145 7.88902 7.92307 8.35809 8.46010 9.12190 10.75077 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.002822 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.300669 B = 9918.013040 C =11256.063853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 H 0.091 0.909 4 C 0.110 3.890 5 N -0.616 5.616 6 C 0.075 3.925 7 C 0.514 3.486 8 O -0.522 6.522 9 C -0.071 4.071 10 C 0.030 3.970 11 C -0.181 4.181 12 C -0.203 4.203 13 C -0.009 4.009 14 N -0.551 5.551 15 H 0.414 0.586 16 N -0.730 5.730 17 C 0.530 3.470 18 O -0.517 6.517 19 C -0.124 4.124 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.163 0.837 42 H 0.393 0.607 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -3.054 24.206 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.109 0.891 4 C -0.014 4.014 5 N -0.350 5.350 6 C -0.069 4.069 7 C 0.302 3.698 8 O -0.396 6.396 9 C -0.111 4.111 10 C -0.083 4.083 11 C -0.206 4.206 12 C -0.228 4.228 13 C -0.141 4.141 14 N -0.145 5.145 15 H 0.250 0.750 16 N -0.386 5.386 17 C 0.316 3.684 18 O -0.391 6.391 19 C -0.274 4.274 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.180 0.820 42 H 0.229 0.771 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.969 -0.565 24.060 24.147 hybrid contribution 0.373 -1.215 -0.936 1.579 sum 2.342 -1.781 23.124 23.311 Atomic orbital electron populations 1.22121 0.94657 1.02165 1.03082 1.21336 0.94289 0.98390 0.83891 0.89054 1.21820 0.79383 1.01631 0.98517 1.47778 1.06359 1.21920 1.58989 1.21941 0.99223 0.87828 0.97869 1.20597 0.89252 0.82166 0.77818 1.90745 1.74798 1.30666 1.43415 1.20161 0.91576 0.96682 1.02709 1.19486 1.06625 0.89553 0.92663 1.20573 1.07168 0.98799 0.94074 1.20845 1.08387 0.96552 0.97021 1.21810 1.06416 0.96812 0.89058 1.41933 1.49030 1.13843 1.09726 0.75006 1.46156 1.69317 1.13619 1.09539 1.20287 0.77047 0.87276 0.83826 1.90710 1.48255 1.15764 1.84357 1.23277 1.04238 1.03504 0.96419 1.84843 1.87210 1.16721 1.02714 1.22305 1.50429 0.98781 0.95420 0.89410 1.24708 0.93342 0.98273 0.94957 1.69931 1.43328 1.35812 1.02579 0.86744 0.81116 0.84832 0.79216 1.19235 1.19895 1.15929 0.91587 0.91388 0.92386 0.89861 0.88346 0.92002 0.90995 0.90562 0.88176 0.86801 0.85155 0.84889 0.81999 0.77108 0.88773 0.88543 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.30 16 2 C 0.13 1.43 2.88 -67.93 -0.20 1.23 16 3 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 4 C 0.11 0.92 5.05 -4.04 -0.02 0.90 16 5 N -0.62 -5.20 2.73 -181.57 -0.50 -5.70 16 6 C 0.07 0.39 9.86 59.85 0.59 0.98 16 7 C 0.51 5.63 7.67 -10.98 -0.08 5.55 16 8 O -0.52 -7.94 15.61 5.57 0.09 -7.85 16 9 C -0.07 -0.59 4.79 -29.03 -0.14 -0.73 16 10 C 0.03 0.32 5.66 -81.79 -0.46 -0.14 16 11 C -0.18 -2.05 10.76 -39.79 -0.43 -2.48 16 12 C -0.20 -2.20 10.86 -39.78 -0.43 -2.63 16 13 C -0.01 -0.09 11.94 -16.75 -0.20 -0.29 16 14 N -0.55 -5.71 6.08 -9.12 -0.06 -5.77 16 15 H 0.41 3.60 8.96 -40.82 -0.37 3.23 16 16 N -0.73 -8.57 4.52 -53.81 -0.24 -8.82 16 17 C 0.53 8.99 7.81 -10.98 -0.09 8.91 16 18 O -0.52 -11.01 15.53 5.55 0.09 -10.93 16 19 C -0.12 -2.27 6.16 36.00 0.22 -2.05 16 20 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 21 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 22 H 0.09 2.57 8.03 -52.49 -0.42 2.14 16 23 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 24 N -0.88 -26.15 13.97 55.49 0.78 -25.38 16 25 Si 0.86 21.54 27.74 -169.99 -4.71 16.83 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.48 8.07 -51.92 -0.42 0.06 16 33 H 0.10 0.92 7.42 -51.93 -0.39 0.54 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.33 5.62 -51.93 -0.29 0.04 16 36 H 0.08 0.36 6.44 -51.93 -0.33 0.02 16 37 H 0.10 0.71 7.40 -51.93 -0.38 0.32 16 38 H 0.11 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.39 3.38 6.13 -40.82 -0.25 3.13 16 43 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 44 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -37.94 389.24 -7.99 -45.92 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.63 Total: 5.08 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.67 Total: -3.77 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.02 Total: -45.66 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.94 -7.99 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287631367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.615 kcal (2) G-P(sol) polarization free energy of solvation -37.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds