Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46873 * 2 1 4 4 C 1.52998 * 109.47457 * 120.00264 * 2 1 3 5 5 N 1.46497 * 109.47316 * 175.00242 * 4 2 1 6 6 C 1.46508 * 119.99666 * 270.00069 * 5 4 2 7 7 C 1.34777 * 119.99935 * 90.00132 * 5 4 2 8 8 O 1.21269 * 119.99905 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.99578 * 179.97438 * 7 5 4 10 10 C 1.50704 * 109.46762 * 179.97438 * 9 7 5 11 11 C 1.34845 * 125.88833 * 85.00052 * 10 9 7 12 12 C 1.40883 * 107.41891 * 180.02562 * 11 10 9 13 13 C 1.34854 * 107.41814 * 0.02562 * 12 11 10 14 14 N 1.36343 * 108.21624 * 0.26031 * 13 12 11 15 15 H 0.96994 * 125.63652 * 179.73195 * 14 13 12 16 16 N 1.46500 * 109.47148 * 240.00384 * 2 1 3 17 17 C 1.34786 * 119.99977 * 85.00011 * 16 2 1 18 18 O 1.21286 * 119.99832 * 359.97438 * 17 16 2 19 19 C 1.50694 * 119.99840 * 180.02562 * 17 16 2 20 20 S 1.81004 * 109.46920 * 179.97438 * 19 17 16 21 21 C 1.76202 * 100.00137 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99769 * 359.97438 * 21 20 19 23 23 C 1.38794 * 120.00010 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00109 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00033 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47155 * 90.00536 * 25 23 21 27 27 H 1.48503 * 109.46972 * 209.99930 * 25 23 21 28 28 H 1.48499 * 109.47018 * 330.00329 * 25 23 21 29 29 H 1.08992 * 109.47185 * 299.99296 * 1 2 3 30 30 H 1.08997 * 109.47041 * 59.99740 * 1 2 3 31 31 H 1.09007 * 109.46975 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46689 * 54.99863 * 4 2 1 33 33 H 1.08997 * 109.47073 * 295.00931 * 4 2 1 34 34 H 1.08999 * 109.47154 * 269.99871 * 6 5 4 35 35 H 1.08995 * 109.47114 * 29.99887 * 6 5 4 36 36 H 1.09003 * 109.46373 * 150.00124 * 6 5 4 37 37 H 1.09007 * 109.46806 * 60.00106 * 9 7 5 38 38 H 1.08998 * 109.47448 * 300.00182 * 9 7 5 39 39 H 1.08010 * 126.29149 * 0.02562 * 11 10 9 40 40 H 1.08008 * 126.29481 * 179.97438 * 12 11 10 41 41 H 1.08002 * 125.89007 * 179.97438 * 13 12 11 42 42 H 0.97002 * 120.00220 * 264.99760 * 16 2 1 43 43 H 1.08995 * 109.47094 * 299.99376 * 19 17 16 44 44 H 1.09000 * 109.47580 * 59.99744 * 19 17 16 45 45 H 0.96998 * 120.00669 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5610 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1142 2.2362 9 6 5.7695 0.0408 1.6557 10 6 6.3868 1.2516 2.3070 11 6 6.6247 1.4050 3.6254 12 6 7.2067 2.6755 3.8039 13 6 7.3017 3.2504 2.5877 14 7 6.7944 2.3836 1.6657 15 1 6.7357 2.5446 0.7110 16 7 2.0183 -0.6905 -1.1962 17 6 2.1471 -0.0180 -2.3572 18 8 1.8582 1.1586 -2.4117 19 6 2.6489 -0.7285 -3.5878 20 16 2.7092 0.4345 -4.9734 21 6 3.3125 -0.6306 -6.2409 22 1 3.5226 -1.6668 -6.0207 23 6 3.5187 -0.1375 -7.5218 24 7 3.9689 -0.9333 -8.4687 25 14 3.1559 1.6550 -7.9023 26 1 4.3746 2.4686 -7.6613 27 1 2.7464 1.7862 -9.3237 28 1 2.0585 2.1351 -7.0245 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7199 1.2950 33 1 1.7516 -0.1585 2.1369 34 1 4.2824 -2.7688 1.3094 35 1 3.4758 -2.3721 -0.2269 36 1 5.0852 -1.7019 0.1323 37 1 6.0886 -0.0138 0.6148 38 1 6.0902 -0.8584 2.1817 39 1 6.4089 0.6859 4.4019 40 1 7.5186 3.1097 4.7424 41 1 7.7054 4.2305 2.3805 42 1 2.2491 -1.6317 -1.1527 43 1 3.6480 -1.1210 -3.3987 44 1 1.9760 -1.5503 -3.8327 45 1 4.1127 -0.5889 -9.3641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001287631367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = -50.472294 kcal Electronic energy + Delta-G solvation = -26908.552876 eV Core-core repulsion = 23052.207318 eV Total energy + Delta-G solvation = -3856.345558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09922 -41.18263 -40.32314 -37.56763 -35.57380 -34.67829 -33.29491 -32.50967 -31.79021 -30.17439 -28.56531 -27.85695 -27.79831 -26.14371 -23.07790 -21.72409 -21.52389 -21.20482 -20.43974 -19.87870 -18.44269 -18.23959 -17.93318 -17.34047 -17.10233 -17.04757 -16.40770 -16.32710 -15.83728 -15.17960 -15.03095 -14.87028 -14.65962 -14.50880 -14.32939 -14.18520 -14.00142 -13.83476 -13.53968 -13.39984 -13.34933 -13.18249 -13.12516 -13.02543 -12.96202 -12.85440 -12.58086 -12.50650 -12.09568 -11.88649 -11.18425 -10.99956 -10.94868 -10.52724 -10.25532 -9.73677 -9.63098 -9.00558 -8.93269 -8.52554 -6.22785 0.97942 1.27821 1.28958 1.45333 1.53842 1.56864 1.60476 1.95862 2.17344 2.22987 2.27474 2.52308 2.71663 2.85993 3.61180 3.68382 3.83862 3.91186 4.09456 4.14483 4.20267 4.25993 4.35323 4.43513 4.45152 4.52341 4.54207 4.63649 4.65958 4.69699 4.80554 4.85440 4.98353 4.99744 5.20981 5.33997 5.40702 5.44244 5.53339 5.70299 6.09164 6.11199 6.23095 6.32769 6.46141 6.75257 6.93406 7.16119 7.21324 8.59602 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.002822 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.300669 B = 9918.013040 C =11256.063853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.047 0.953 4 C 0.115 3.885 5 N -0.612 5.612 6 C 0.063 3.937 7 C 0.507 3.493 8 O -0.575 6.575 9 C -0.066 4.066 10 C 0.017 3.983 11 C -0.204 4.204 12 C -0.225 4.225 13 C -0.017 4.017 14 N -0.556 5.556 15 H 0.419 0.581 16 N -0.701 5.701 17 C 0.534 3.466 18 O -0.566 6.566 19 C -0.108 4.108 20 S -0.183 6.183 21 C -0.524 4.524 22 H 0.066 0.934 23 C 0.047 3.953 24 N -0.916 5.916 25 Si 0.910 3.090 26 H -0.263 1.263 27 H -0.260 1.260 28 H -0.240 1.240 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.145 0.855 41 H 0.186 0.814 42 H 0.414 0.586 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 -4.665 25.353 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.065 0.935 4 C -0.008 4.008 5 N -0.345 5.345 6 C -0.078 4.078 7 C 0.296 3.704 8 O -0.454 6.454 9 C -0.106 4.106 10 C -0.096 4.096 11 C -0.229 4.229 12 C -0.249 4.249 13 C -0.149 4.149 14 N -0.151 5.151 15 H 0.256 0.744 16 N -0.357 5.357 17 C 0.320 3.680 18 O -0.444 6.444 19 C -0.259 4.259 20 S 0.044 5.956 21 C -0.672 4.672 22 H 0.084 0.916 23 C -0.158 4.158 24 N -0.554 5.554 25 Si 0.733 3.267 26 H -0.188 1.188 27 H -0.185 1.185 28 H -0.164 1.164 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.203 0.797 42 H 0.253 0.747 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.931 -2.264 25.216 25.391 hybrid contribution 0.378 -0.827 -1.155 1.470 sum 2.308 -3.092 24.061 24.369 Atomic orbital electron populations 1.22071 0.93593 1.03674 1.02158 1.21346 0.95076 0.96532 0.84554 0.93475 1.21821 0.79668 1.03188 0.96149 1.47894 1.06305 1.22172 1.58100 1.22261 0.99582 0.87104 0.98885 1.21067 0.90362 0.81777 0.77168 1.90723 1.75825 1.32857 1.45982 1.20258 0.89672 0.96825 1.03821 1.19914 1.06443 0.90385 0.92901 1.20854 1.07878 0.99418 0.94757 1.21168 1.08928 0.96858 0.97978 1.22281 1.06017 0.97675 0.88917 1.42077 1.48943 1.13936 1.10151 0.74398 1.45874 1.67422 1.14347 1.08068 1.20045 0.76795 0.86569 0.84634 1.90707 1.50739 1.17864 1.85124 1.23255 1.06297 1.02102 0.94212 1.84859 1.87054 1.18904 1.04802 1.22437 1.49828 0.98318 0.96570 0.91560 1.25500 0.93382 1.01888 0.95058 1.70002 1.44605 1.37571 1.03210 0.85922 0.80888 0.80434 0.79467 1.18806 1.18473 1.16353 0.90332 0.94573 0.89556 0.85771 0.89306 0.89297 0.89972 0.89807 0.86663 0.83840 0.84513 0.83743 0.79664 0.74661 0.86470 0.86671 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.13 2.75 2.88 44.99 0.13 2.87 16 3 H 0.05 1.46 7.58 -2.39 -0.02 1.44 16 4 C 0.12 1.62 5.05 86.38 0.44 2.06 16 5 N -0.61 -8.65 2.73 -846.75 -2.31 -10.96 16 6 C 0.06 0.39 9.86 127.77 1.26 1.65 16 7 C 0.51 10.46 7.67 87.66 0.67 11.13 16 8 O -0.57 -17.67 15.61 -3.00 -0.05 -17.72 16 9 C -0.07 -0.98 4.79 29.10 0.14 -0.84 16 10 C 0.02 0.36 5.66 41.08 0.23 0.59 16 11 C -0.20 -4.59 10.76 22.14 0.24 -4.35 16 12 C -0.22 -4.85 10.86 22.14 0.24 -4.61 16 13 C -0.02 -0.34 11.94 83.21 0.99 0.65 16 14 N -0.56 -11.36 6.08 -182.76 -1.11 -12.47 16 15 H 0.42 7.19 8.96 -92.71 -0.83 6.36 16 16 N -0.70 -14.67 4.52 -442.53 -2.00 -16.67 16 17 C 0.53 17.36 7.81 87.65 0.68 18.05 16 18 O -0.57 -24.23 15.53 -3.05 -0.05 -24.27 16 19 C -0.11 -3.75 6.16 71.23 0.44 -3.31 16 20 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 21 C -0.52 -29.51 10.04 67.95 0.68 -28.83 16 22 H 0.07 3.90 8.03 -2.91 -0.02 3.87 16 23 C 0.05 2.72 5.50 84.86 0.47 3.18 16 24 N -0.92 -54.64 13.97 21.65 0.30 -54.34 16 25 Si 0.91 44.49 27.74 68.60 1.90 46.39 16 26 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.12 0.79 8.07 -2.38 -0.02 0.77 16 33 H 0.09 1.53 7.42 -2.39 -0.02 1.51 16 34 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.08 0.34 5.62 -2.39 -0.01 0.33 16 36 H 0.08 0.44 6.44 -2.39 -0.02 0.43 16 37 H 0.12 1.35 7.40 -2.38 -0.02 1.33 16 38 H 0.14 1.22 8.11 -2.39 -0.02 1.20 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 40 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.41 5.37 6.13 -92.71 -0.57 4.80 16 43 H 0.12 3.57 8.14 -2.40 -0.02 3.55 16 44 H 0.12 3.62 8.14 -2.40 -0.02 3.60 16 45 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -85.95 389.24 2.52 -83.43 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.42 Total: 20.64 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 7.30 Total: -4.02 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -5.12 Total: -94.44 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.09 Total: -41.99 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -85.95 2.52 -83.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287631367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.960 kcal (2) G-P(sol) polarization free energy of solvation -85.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds