Wall clock time and date at job start Sat Apr 11 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.47203 * 109.46897 * 240.00124 * 2 1 3 5 5 N 2.60804 * 109.46854 * 240.00045 * 2 1 3 6 6 C 1.50698 * 109.47425 * 120.00042 * 2 1 3 7 7 O 1.21284 * 119.99613 * 94.37874 * 6 2 1 8 8 N 1.34779 * 120.00017 * 274.38614 * 6 2 1 9 9 C 1.46493 * 119.99850 * 8.17682 * 8 6 2 10 10 C 1.53002 * 109.47420 * 98.75222 * 9 8 6 11 11 C 1.52996 * 109.47382 * 184.03120 * 10 9 8 12 12 N 1.46501 * 109.47061 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99895 * 180.02562 * 12 11 10 14 14 O 1.21287 * 120.00075 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00230 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47517 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99974 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00183 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99663 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99707 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47342 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47116 * 120.00147 * 21 19 17 24 24 H 1.48500 * 109.46964 * 239.99645 * 21 19 17 25 25 C 1.46497 * 119.99725 * 188.17766 * 8 6 2 26 26 C 1.53002 * 117.50098 * 16.41892 * 25 8 6 27 27 C 1.53002 * 117.50029 * 307.75681 * 25 8 6 28 28 H 1.08994 * 109.47042 * 193.08439 * 1 2 3 29 29 H 1.09004 * 109.46800 * 313.08423 * 1 2 3 30 30 H 1.08997 * 109.46936 * 73.07849 * 1 2 3 31 31 H 1.09000 * 109.46989 * 218.75501 * 9 8 6 32 32 H 1.09002 * 109.47729 * 338.75105 * 9 8 6 33 33 H 1.08997 * 109.46953 * 304.03615 * 10 9 8 34 34 H 1.09003 * 109.46632 * 64.03221 * 10 9 8 35 35 H 1.08997 * 109.47481 * 300.00172 * 11 10 9 36 36 H 1.08998 * 109.46989 * 59.99943 * 11 10 9 37 37 H 0.96997 * 119.99729 * 359.97438 * 12 11 10 38 38 H 1.08997 * 109.47038 * 300.00321 * 15 13 12 39 39 H 1.08998 * 109.47006 * 59.99832 * 15 13 12 40 40 H 0.96997 * 120.00037 * 180.02562 * 20 19 17 41 41 H 1.09004 * 115.54910 * 162.09279 * 25 8 6 42 42 H 1.09000 * 117.49588 * 0.02562 * 26 25 8 43 43 H 1.09003 * 117.49548 * 145.02247 * 26 25 8 44 44 H 1.09006 * 117.49846 * 214.97838 * 27 25 8 45 45 H 1.09002 * 117.50037 * 359.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.3102 -1.8899 1.1787 8 7 2.1729 -0.0351 2.3883 9 6 1.6718 1.3368 2.5016 10 6 0.3064 1.3258 3.1918 11 6 -0.2623 2.7458 3.2202 12 7 -1.5694 2.7353 3.8816 13 6 -2.2628 3.8824 4.0221 14 8 -1.8045 4.9235 3.6012 15 6 -3.6077 3.8715 4.7020 16 16 -4.2811 5.5513 4.7343 17 6 -5.8088 5.2526 5.5599 18 1 -6.0669 4.2517 5.8728 19 6 -6.6811 6.3036 5.8071 20 7 -6.3668 7.5235 5.4252 21 14 -8.3010 5.9869 6.6817 22 1 -8.4156 4.5417 7.0034 23 1 -8.3492 6.7793 7.9367 24 1 -9.4264 6.3879 5.7997 25 6 2.8268 -0.6730 3.5336 26 6 3.6601 -1.9274 3.2629 27 6 2.3074 -2.0445 3.9699 28 1 -0.3633 -1.0009 0.2326 29 1 -0.3633 0.7020 0.7506 30 1 -0.3633 0.2991 -0.9832 31 1 2.3712 1.9317 3.0890 32 1 1.5724 1.7707 1.5066 33 1 -0.3728 0.6733 2.6432 34 1 0.4181 0.9587 4.2120 35 1 0.4169 3.3984 3.7688 36 1 -0.3739 3.1130 2.2000 37 1 -1.9361 1.9026 4.2178 38 1 -4.2868 3.2187 4.1536 39 1 -3.4960 3.5047 5.7223 40 1 -6.9762 8.2580 5.5983 41 1 3.1755 0.0043 4.3132 42 1 3.7221 -2.2776 2.2326 43 1 4.5568 -2.0754 3.8646 44 1 2.3149 -2.2695 5.0365 45 1 1.4789 -2.4719 3.4051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294568529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:05 Heat of formation + Delta-G solvation = -9.477501 kcal Electronic energy + Delta-G solvation = -26001.081935 eV Core-core repulsion = 22146.514045 eV Total energy + Delta-G solvation = -3854.567890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30482 -39.26981 -37.71845 -36.88615 -36.19116 -34.69504 -33.20233 -32.46562 -31.54515 -29.15706 -26.10214 -25.70713 -25.33471 -23.75239 -22.77177 -22.23619 -20.53826 -20.15197 -18.17578 -17.98262 -17.83359 -16.58887 -16.38601 -15.97238 -15.89205 -15.85299 -15.34108 -14.84698 -14.83754 -14.43267 -14.24256 -14.00614 -13.58357 -13.56798 -13.31134 -13.17928 -13.03604 -12.98878 -12.87804 -12.57481 -12.38405 -12.17484 -11.93851 -11.88327 -11.70232 -11.50888 -11.26783 -11.09965 -11.05856 -10.79735 -10.77009 -10.04887 -9.84658 -9.52196 -9.11793 -9.00435 -8.99109 -8.28010 -6.54376 -6.25626 -3.96363 1.76526 1.88620 2.31083 2.51684 2.97521 3.01640 3.18889 3.25302 3.28001 3.29666 3.46767 3.65016 3.73608 4.10360 4.16709 4.27536 4.35574 4.42951 4.53547 4.57444 4.59521 4.71401 4.86650 4.94244 4.98141 5.06474 5.09886 5.11118 5.15713 5.32191 5.38511 5.46933 5.57658 5.60347 5.64684 5.83225 5.83808 5.89555 6.08728 6.16277 6.49502 6.64050 7.07152 7.45653 7.56205 7.59993 8.31702 8.52353 9.20099 10.81814 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.001827 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.332879 B =15325.513634 C =15905.573679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.015 4.015 3 H 0.138 0.862 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.527 3.473 7 O -0.516 6.516 8 N -0.578 5.578 9 C 0.106 3.894 10 C -0.154 4.154 11 C 0.122 3.878 12 N -0.740 5.740 13 C 0.532 3.468 14 O -0.517 6.517 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.069 3.931 26 C -0.191 4.191 27 C -0.183 4.183 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.270 -16.632 -4.549 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 H 0.156 0.844 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.313 3.687 7 O -0.392 6.392 8 N -0.308 5.308 9 C -0.017 4.017 10 C -0.193 4.193 11 C -0.003 4.003 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.391 6.391 15 C -0.305 4.305 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.034 4.034 26 C -0.229 4.229 27 C -0.221 4.221 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.725 -16.116 -6.706 26.339 hybrid contribution -1.933 -1.489 1.726 2.989 sum 17.792 -17.604 -4.981 25.520 Atomic orbital electron populations 1.21913 0.88877 1.04720 1.05112 1.18942 0.99440 0.99943 0.85596 0.84444 1.28081 0.93968 0.93901 0.94069 1.81225 1.07781 1.07776 1.11640 1.20061 0.77959 0.86954 0.83749 1.90663 1.48688 1.15104 1.84756 1.47230 1.57543 1.15012 1.11014 1.21728 0.95460 0.81635 1.02886 1.22311 0.96632 0.97434 1.02877 1.21159 0.84965 0.95645 0.98512 1.45969 1.20279 1.10781 1.62472 1.20310 0.86169 0.83010 0.78676 1.90710 1.69641 1.30979 1.47726 1.23532 0.95837 1.08445 1.02668 1.85397 1.20890 0.99948 1.77189 1.22901 1.04456 0.97169 1.43815 0.90861 1.24998 0.98621 0.94448 0.95558 1.70022 1.36628 0.99404 1.44193 0.86116 0.81843 0.78455 0.79073 1.19615 1.20563 1.20560 1.21757 1.01617 0.89501 0.90557 1.23758 0.94558 0.99725 1.04819 1.23275 0.98686 0.99409 1.00740 0.90702 0.89310 0.89871 0.89066 0.88938 0.90425 0.90211 0.91299 0.91302 0.76754 0.89208 0.89222 0.92211 0.84817 0.85180 0.88955 0.88457 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.11 37.16 0.34 -0.22 16 2 C -0.01 -0.07 2.26 -94.56 -0.21 -0.29 16 3 H 0.14 0.22 6.34 -51.93 -0.33 -0.11 16 4 C 0.22 1.92 13.98 -20.76 -0.29 1.63 16 5 N -0.41 -4.85 18.54 42.15 0.78 -4.07 16 6 C 0.53 3.61 6.50 -10.99 -0.07 3.54 16 7 O -0.52 -5.43 12.01 5.55 0.07 -5.36 16 8 N -0.58 -2.84 2.85 -166.11 -0.47 -3.32 16 9 C 0.11 0.29 5.08 -4.04 -0.02 0.27 16 10 C -0.15 -0.60 5.23 -26.73 -0.14 -0.74 16 11 C 0.12 0.90 5.67 -4.04 -0.02 0.87 16 12 N -0.74 -7.70 5.56 -60.30 -0.33 -8.03 16 13 C 0.53 8.78 7.85 -10.99 -0.09 8.70 16 14 O -0.52 -10.66 15.86 5.55 0.09 -10.57 16 15 C -0.15 -2.87 6.16 36.00 0.22 -2.65 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -14.78 9.50 30.94 0.29 -14.49 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 20 N -0.87 -25.56 13.22 55.49 0.73 -24.82 16 21 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.07 0.38 6.61 -67.93 -0.45 -0.07 16 26 C -0.19 -1.35 9.63 -26.69 -0.26 -1.61 16 27 C -0.18 -1.20 9.87 -26.69 -0.26 -1.46 16 28 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 29 H 0.09 0.22 5.47 -51.93 -0.28 -0.07 16 30 H 0.08 0.28 8.06 -51.93 -0.42 -0.14 16 31 H 0.09 0.17 8.13 -51.93 -0.42 -0.25 16 32 H 0.09 0.10 5.40 -51.93 -0.28 -0.18 16 33 H 0.08 0.29 6.50 -51.93 -0.34 -0.05 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 3.08 8.47 -40.82 -0.35 2.73 16 38 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 39 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.13 1.26 5.31 -51.95 -0.28 0.99 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.82 7.53 -51.93 -0.39 0.43 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -37.72 392.94 -7.94 -45.66 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.43 Total: -2.92 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.06 Total: -4.57 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.71 Total: -40.24 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.15 Total: -15.93 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.72 -7.94 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294568529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.182 kcal (2) G-P(sol) polarization free energy of solvation -37.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds