Wall clock time and date at job start Sat Apr 11 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.47203 * 109.46897 * 240.00124 * 2 1 3 5 5 N 2.60804 * 109.46854 * 240.00045 * 2 1 3 6 6 C 1.50698 * 109.47425 * 120.00042 * 2 1 3 7 7 O 1.21284 * 119.99613 * 94.37874 * 6 2 1 8 8 N 1.34779 * 120.00017 * 274.38614 * 6 2 1 9 9 C 1.46493 * 119.99850 * 8.17682 * 8 6 2 10 10 C 1.53002 * 109.47420 * 98.75222 * 9 8 6 11 11 C 1.52996 * 109.47382 * 184.03120 * 10 9 8 12 12 N 1.46501 * 109.47061 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99895 * 180.02562 * 12 11 10 14 14 O 1.21287 * 120.00075 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00230 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47517 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99974 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00183 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99663 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99707 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47342 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47116 * 120.00147 * 21 19 17 24 24 H 1.48500 * 109.46964 * 239.99645 * 21 19 17 25 25 C 1.46497 * 119.99725 * 188.17766 * 8 6 2 26 26 C 1.53002 * 117.50098 * 16.41892 * 25 8 6 27 27 C 1.53002 * 117.50029 * 307.75681 * 25 8 6 28 28 H 1.08994 * 109.47042 * 193.08439 * 1 2 3 29 29 H 1.09004 * 109.46800 * 313.08423 * 1 2 3 30 30 H 1.08997 * 109.46936 * 73.07849 * 1 2 3 31 31 H 1.09000 * 109.46989 * 218.75501 * 9 8 6 32 32 H 1.09002 * 109.47729 * 338.75105 * 9 8 6 33 33 H 1.08997 * 109.46953 * 304.03615 * 10 9 8 34 34 H 1.09003 * 109.46632 * 64.03221 * 10 9 8 35 35 H 1.08997 * 109.47481 * 300.00172 * 11 10 9 36 36 H 1.08998 * 109.46989 * 59.99943 * 11 10 9 37 37 H 0.96997 * 119.99729 * 359.97438 * 12 11 10 38 38 H 1.08997 * 109.47038 * 300.00321 * 15 13 12 39 39 H 1.08998 * 109.47006 * 59.99832 * 15 13 12 40 40 H 0.96997 * 120.00037 * 180.02562 * 20 19 17 41 41 H 1.09004 * 115.54910 * 162.09279 * 25 8 6 42 42 H 1.09000 * 117.49588 * 0.02562 * 26 25 8 43 43 H 1.09003 * 117.49548 * 145.02247 * 26 25 8 44 44 H 1.09006 * 117.49846 * 214.97838 * 27 25 8 45 45 H 1.09002 * 117.50037 * 359.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.3102 -1.8899 1.1787 8 7 2.1729 -0.0351 2.3883 9 6 1.6718 1.3368 2.5016 10 6 0.3064 1.3258 3.1918 11 6 -0.2623 2.7458 3.2202 12 7 -1.5694 2.7353 3.8816 13 6 -2.2628 3.8824 4.0221 14 8 -1.8045 4.9235 3.6012 15 6 -3.6077 3.8715 4.7020 16 16 -4.2811 5.5513 4.7343 17 6 -5.8088 5.2526 5.5599 18 1 -6.0669 4.2517 5.8728 19 6 -6.6811 6.3036 5.8071 20 7 -6.3668 7.5235 5.4252 21 14 -8.3010 5.9869 6.6817 22 1 -8.4156 4.5417 7.0034 23 1 -8.3492 6.7793 7.9367 24 1 -9.4264 6.3879 5.7997 25 6 2.8268 -0.6730 3.5336 26 6 3.6601 -1.9274 3.2629 27 6 2.3074 -2.0445 3.9699 28 1 -0.3633 -1.0009 0.2326 29 1 -0.3633 0.7020 0.7506 30 1 -0.3633 0.2991 -0.9832 31 1 2.3712 1.9317 3.0890 32 1 1.5724 1.7707 1.5066 33 1 -0.3728 0.6733 2.6432 34 1 0.4181 0.9587 4.2120 35 1 0.4169 3.3984 3.7688 36 1 -0.3739 3.1130 2.2000 37 1 -1.9361 1.9026 4.2178 38 1 -4.2868 3.2187 4.1536 39 1 -3.4960 3.5047 5.7223 40 1 -6.9762 8.2580 5.5983 41 1 3.1755 0.0043 4.3132 42 1 3.7221 -2.2776 2.2326 43 1 4.5568 -2.0754 3.8646 44 1 2.3149 -2.2695 5.0365 45 1 1.4789 -2.4719 3.4051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294568529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:04 Heat of formation + Delta-G solvation = -35.996476 kcal Electronic energy + Delta-G solvation = -26002.231884 eV Core-core repulsion = 22146.514045 eV Total energy + Delta-G solvation = -3855.717839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79674 -40.46627 -38.29984 -37.50703 -36.81915 -35.51493 -34.55024 -33.70473 -32.35482 -30.34247 -27.66166 -26.53673 -26.03575 -24.23427 -23.28121 -22.71235 -21.67894 -20.70569 -19.77292 -18.66278 -18.37848 -17.65727 -17.09733 -16.93007 -16.84439 -16.66686 -16.45313 -15.92584 -15.73290 -15.63720 -15.05334 -14.78340 -14.62588 -14.39837 -14.17155 -14.00547 -13.93529 -13.72652 -13.57532 -13.31319 -13.11941 -13.10397 -12.88688 -12.84424 -12.57969 -12.54842 -12.37946 -12.18210 -11.97492 -11.67371 -11.66251 -11.22525 -11.12957 -10.86986 -10.57533 -10.21645 -9.96349 -9.47475 -8.61243 -8.31910 -6.08460 1.23585 1.30838 1.37399 1.43261 1.51749 1.62361 1.65094 1.73125 1.98223 2.29839 2.44789 2.75215 3.00292 3.02448 3.29785 3.37537 3.81690 3.89601 3.97931 4.03512 4.08803 4.10450 4.17011 4.24504 4.33815 4.38126 4.52410 4.59928 4.68602 4.70981 4.72574 4.81558 4.89245 4.93188 5.09772 5.14272 5.19839 5.37205 5.42301 5.45794 5.60233 5.69588 6.20484 6.23277 6.43540 6.62397 6.98012 7.10206 7.36902 8.77260 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.001827 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.332879 B =15325.513634 C =15905.573679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 H 0.180 0.820 4 C 0.241 3.759 5 N -0.473 5.473 6 C 0.523 3.477 7 O -0.559 6.559 8 N -0.569 5.569 9 C 0.101 3.899 10 C -0.141 4.141 11 C 0.119 3.881 12 N -0.713 5.713 13 C 0.534 3.466 14 O -0.565 6.565 15 C -0.132 4.132 16 S -0.152 6.152 17 C -0.544 4.544 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.996 3.004 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.082 3.918 26 C -0.207 4.207 27 C -0.186 4.186 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.270 0.730 41 H 0.163 0.837 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.042 -17.246 -3.224 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 H 0.197 0.803 4 C -0.077 4.077 5 N -0.149 5.149 6 C 0.310 3.690 7 O -0.438 6.438 8 N -0.298 5.298 9 C -0.021 4.021 10 C -0.180 4.180 11 C -0.005 4.005 12 N -0.367 5.367 13 C 0.320 3.680 14 O -0.443 6.443 15 C -0.284 4.284 16 S 0.075 5.925 17 C -0.692 4.692 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.818 3.182 22 H -0.180 1.180 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.022 4.022 26 C -0.245 4.245 27 C -0.225 4.225 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.252 0.748 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.181 0.819 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.513 -16.776 -5.370 26.287 hybrid contribution -1.762 -1.402 1.320 2.610 sum 17.751 -18.178 -4.051 25.728 Atomic orbital electron populations 1.21949 0.87674 1.04564 1.06170 1.19262 1.00176 1.01111 0.82941 0.80329 1.28827 0.92345 0.92565 0.94007 1.81233 1.09941 1.09817 1.13917 1.20385 0.77409 0.86518 0.84693 1.90678 1.50565 1.17110 1.85472 1.47271 1.56675 1.15615 1.10274 1.21947 0.95103 0.80431 1.04585 1.22192 0.97152 0.95019 1.03589 1.21380 0.83039 0.97860 0.98238 1.45733 1.20678 1.09466 1.60841 1.19929 0.85675 0.83951 0.78478 1.90701 1.70507 1.33041 1.50061 1.23398 0.97371 1.03063 1.04547 1.85540 1.21937 1.07432 1.77556 1.23239 1.04736 0.97655 1.43566 0.89970 1.26094 1.02722 0.94093 0.96299 1.70181 1.38241 1.00552 1.45754 0.84940 0.76575 0.79020 0.77636 1.18039 1.20074 1.20088 1.22004 1.00007 0.89388 0.90785 1.23653 0.95437 1.01832 1.03532 1.23228 0.97531 1.00642 1.01058 0.92042 0.87233 0.89266 0.87171 0.86695 0.89735 0.89749 0.91659 0.90867 0.74796 0.87340 0.87448 0.92066 0.81945 0.88067 0.87821 0.87047 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.11 71.98 0.66 -0.05 16 2 C -0.01 -0.08 2.26 -13.34 -0.03 -0.11 16 3 H 0.18 -0.19 6.34 -2.39 -0.02 -0.21 16 4 C 0.24 4.08 13.98 89.44 1.25 5.33 16 5 N -0.47 -11.51 18.54 20.01 0.37 -11.14 16 6 C 0.52 6.28 6.50 87.66 0.57 6.85 16 7 O -0.56 -11.88 12.01 -3.04 -0.04 -11.91 16 8 N -0.57 -3.85 2.85 -797.83 -2.27 -6.12 16 9 C 0.10 0.10 5.08 86.38 0.44 0.54 16 10 C -0.14 -0.46 5.23 30.59 0.16 -0.30 16 11 C 0.12 1.29 5.67 86.38 0.49 1.78 16 12 N -0.71 -12.38 5.56 -463.07 -2.57 -14.95 16 13 C 0.53 16.62 7.85 87.66 0.69 17.31 16 14 O -0.56 -22.96 15.86 -3.05 -0.05 -23.01 16 15 C -0.13 -4.72 6.16 71.24 0.44 -4.28 16 16 S -0.15 -8.01 20.57 -56.49 -1.16 -9.17 16 17 C -0.54 -29.96 9.50 67.95 0.65 -29.32 16 18 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -54.56 13.22 21.65 0.29 -54.28 16 21 Si 1.00 42.41 29.55 68.60 2.03 44.43 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 25 C 0.08 0.67 6.61 44.99 0.30 0.97 16 26 C -0.21 -2.79 9.63 30.62 0.29 -2.50 16 27 C -0.19 -2.21 9.87 30.62 0.30 -1.90 16 28 H 0.06 0.49 8.07 -2.39 -0.02 0.47 16 29 H 0.11 0.08 5.47 -2.38 -0.01 0.07 16 30 H 0.09 0.38 8.06 -2.39 -0.02 0.36 16 31 H 0.11 -0.17 8.13 -2.39 -0.02 -0.19 16 32 H 0.12 -0.37 5.40 -2.39 -0.01 -0.38 16 33 H 0.08 0.22 6.50 -2.39 -0.02 0.21 16 34 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.42 4.66 8.47 -92.71 -0.79 3.87 16 38 H 0.11 3.45 8.14 -2.40 -0.02 3.43 16 39 H 0.11 3.43 8.14 -2.40 -0.02 3.41 16 40 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 41 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.10 2.06 5.31 -2.74 -0.01 2.04 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.08 1.26 7.53 -2.39 -0.02 1.24 16 Total: -1.00 -88.00 392.94 3.50 -84.51 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 0.24 Total: 6.17 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 6.67 Total: -4.52 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -4.19 Total: -86.49 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.08 Total: -34.92 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -88.00 3.50 -84.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294568529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.510 kcal (2) G-P(sol) polarization free energy of solvation -88.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds