Wall clock time and date at job start Sat Apr 11 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47545 * 2 1 4 4 C 1.47203 * 109.47031 * 120.00199 * 2 1 3 5 5 N 2.60805 * 109.47145 * 120.00362 * 2 1 3 6 6 C 1.50707 * 109.46909 * 239.99739 * 2 1 3 7 7 O 1.21273 * 120.00187 * 246.35293 * 6 2 1 8 8 N 1.34780 * 119.99300 * 66.35532 * 6 2 1 9 9 C 1.46493 * 120.00267 * 5.75925 * 8 6 2 10 10 C 1.53000 * 109.47073 * 86.58709 * 9 8 6 11 11 C 1.53002 * 109.46912 * 179.97438 * 10 9 8 12 12 N 1.46500 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00252 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99824 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00483 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47263 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99863 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31637 * 119.99658 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00272 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46901 * 59.99771 * 21 19 17 23 23 H 1.48497 * 109.47432 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47037 * 300.00261 * 21 19 17 25 25 C 1.46499 * 119.99471 * 185.75870 * 8 6 2 26 26 C 1.53002 * 117.49923 * 16.55345 * 25 8 6 27 27 C 1.53005 * 117.49973 * 307.89568 * 25 8 6 28 28 H 1.09000 * 109.47523 * 186.17780 * 1 2 3 29 29 H 1.09007 * 109.46486 * 306.17802 * 1 2 3 30 30 H 1.09000 * 109.47167 * 66.17262 * 1 2 3 31 31 H 1.09001 * 109.46789 * 206.58195 * 9 8 6 32 32 H 1.09000 * 109.47216 * 326.58205 * 9 8 6 33 33 H 1.09001 * 109.46893 * 299.99422 * 10 9 8 34 34 H 1.08991 * 109.47376 * 59.99808 * 10 9 8 35 35 H 1.09001 * 109.46916 * 299.99464 * 11 10 9 36 36 H 1.09000 * 109.47251 * 59.99573 * 11 10 9 37 37 H 0.97000 * 120.00402 * 0.02562 * 12 11 10 38 38 H 1.09003 * 109.46932 * 300.00842 * 15 13 12 39 39 H 1.09000 * 109.47039 * 60.00124 * 15 13 12 40 40 H 0.97002 * 119.99654 * 180.02562 * 20 19 17 41 41 H 1.09003 * 115.55106 * 162.22497 * 25 8 6 42 42 H 1.08996 * 117.49841 * 0.02562 * 26 25 8 43 43 H 1.09000 * 117.49589 * 145.02221 * 26 25 8 44 44 H 1.09003 * 117.49807 * 214.98398 * 27 25 8 45 45 H 1.09000 * 117.49623 * 359.97236 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3994 -1.2296 2.1294 6 6 2.0323 -0.7105 -1.2305 7 8 2.6316 -1.7593 -1.1230 8 7 1.8155 -0.1801 -2.4504 9 6 1.2046 1.1455 -2.5748 10 6 2.2936 2.2177 -2.5018 11 6 1.6557 3.6023 -2.6324 12 7 2.6983 4.6290 -2.5619 13 6 2.3681 5.9324 -2.6555 14 8 1.2078 6.2553 -2.7976 15 6 3.4407 6.9885 -2.5836 16 16 2.6860 8.6264 -2.7379 17 6 4.1243 9.6379 -2.6245 18 1 5.0958 9.1831 -2.4987 19 6 4.0090 11.0191 -2.6981 20 7 2.8249 11.5734 -2.8521 21 14 5.5338 12.0914 -2.5787 22 1 6.4667 11.7500 -3.6825 23 1 5.1436 13.5204 -2.6838 24 1 6.2033 11.8563 -1.2743 25 6 2.1907 -0.9295 -3.6521 26 6 2.4549 -2.4285 -3.4961 27 6 3.6214 -1.4659 -3.7321 28 1 -0.3634 -1.0217 0.1106 29 1 -0.3632 0.6067 0.8296 30 1 -0.3633 0.4152 -0.9401 31 1 0.6865 1.2185 -3.5310 32 1 0.4924 1.2950 -1.7633 33 1 2.8118 2.1448 -1.5456 34 1 3.0057 2.0682 -3.3133 35 1 1.1378 3.6749 -3.5888 36 1 0.9432 3.7520 -1.8212 37 1 3.6264 4.3708 -2.4486 38 1 3.9585 6.9159 -1.6271 39 1 4.1533 6.8385 -3.3946 40 1 2.7444 12.5386 -2.9039 41 1 1.7263 -0.5941 -4.5794 42 1 2.3490 -2.8571 -2.4996 43 1 2.1646 -3.0791 -4.3210 44 1 4.0982 -1.4836 -4.7122 45 1 4.2836 -1.2608 -2.8909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294568530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:08 Heat of formation + Delta-G solvation = -4.859172 kcal Electronic energy + Delta-G solvation = -25972.859431 eV Core-core repulsion = 22118.491807 eV Total energy + Delta-G solvation = -3854.367624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.33471 -39.26506 -37.68495 -36.91794 -36.19387 -34.76937 -33.15872 -32.45763 -31.48229 -29.14180 -26.39380 -25.61023 -25.18801 -23.84747 -22.72647 -22.20986 -20.52456 -20.22518 -18.26570 -17.88055 -17.71544 -16.57770 -16.38793 -16.10086 -15.84742 -15.75637 -15.39192 -14.92429 -14.82996 -14.56376 -14.22110 -13.91224 -13.64335 -13.59242 -13.20377 -13.17330 -13.15402 -13.07031 -12.77486 -12.56816 -12.38294 -12.21475 -11.95348 -11.88724 -11.62230 -11.49910 -11.23274 -11.07770 -11.06088 -10.79966 -10.75133 -10.00977 -9.86007 -9.51850 -9.09709 -8.99481 -8.99361 -8.28464 -6.53820 -6.24645 -3.95622 1.80228 1.89077 2.34929 2.52884 2.98002 3.01987 3.21446 3.25231 3.27072 3.28739 3.45962 3.65533 3.75614 4.14762 4.17687 4.24924 4.32493 4.42880 4.54363 4.56134 4.58159 4.70946 4.74504 4.92074 5.00874 5.04990 5.10135 5.10664 5.14775 5.32860 5.38883 5.45175 5.56371 5.60607 5.63988 5.80636 5.84308 5.89585 6.09304 6.18471 6.50013 6.64391 7.10848 7.47084 7.56228 7.60216 8.31986 8.52598 9.20725 10.82673 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.001840 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.391639 B =15212.325973 C =15647.145712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.015 4.015 3 H 0.140 0.860 4 C 0.220 3.780 5 N -0.408 5.408 6 C 0.527 3.473 7 O -0.517 6.517 8 N -0.576 5.576 9 C 0.096 3.904 10 C -0.154 4.154 11 C 0.123 3.877 12 N -0.740 5.740 13 C 0.532 3.468 14 O -0.517 6.517 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.069 3.931 26 C -0.192 4.192 27 C -0.185 4.185 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -26.292 -1.160 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.040 4.040 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.083 5.083 6 C 0.313 3.687 7 O -0.394 6.394 8 N -0.307 5.307 9 C -0.026 4.026 10 C -0.193 4.193 11 C -0.002 4.002 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.391 6.391 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.034 4.034 26 C -0.229 4.229 27 C -0.223 4.223 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.151 -26.942 0.047 27.430 hybrid contribution 2.778 0.566 -0.197 2.842 sum -2.373 -26.376 -0.150 26.483 Atomic orbital electron populations 1.22037 0.89278 1.04733 1.05077 1.18919 0.99142 1.00321 0.85582 0.84241 1.28000 0.93983 0.93977 0.93991 1.81219 1.07512 1.07827 1.11711 1.20054 0.79431 0.85309 0.83884 1.90647 1.40070 1.22857 1.85779 1.47187 1.61259 1.17824 1.04397 1.21985 0.95360 0.80018 1.05278 1.22284 0.99338 0.93830 1.03818 1.21152 0.90971 0.85378 1.02705 1.45978 1.10538 1.05795 1.77234 1.20309 0.90167 0.82458 0.75218 1.90706 1.20184 1.81227 1.46937 1.23536 1.00757 1.01247 1.04964 1.85381 1.12135 0.90330 1.95492 1.22821 0.93895 0.93498 1.58256 0.90974 1.24992 0.97018 0.97049 0.94512 1.70007 1.22526 1.11548 1.46187 0.86223 0.81670 0.78785 0.78825 1.19933 1.20803 1.19937 1.21785 0.99560 0.93871 0.88220 1.23821 1.01709 0.91612 1.05743 1.23271 0.91615 1.04246 1.03190 0.90779 0.89617 0.89004 0.88681 0.88313 0.90918 0.90185 0.91263 0.91259 0.76761 0.89213 0.89221 0.92106 0.84824 0.84850 0.89027 0.88438 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 8.75 37.16 0.33 -0.08 16 2 C -0.02 -0.08 2.29 -94.55 -0.22 -0.29 16 3 H 0.14 0.35 6.72 -51.93 -0.35 0.00 16 4 C 0.22 1.99 13.89 -20.76 -0.29 1.70 16 5 N -0.41 -5.00 18.54 42.15 0.78 -4.22 16 6 C 0.53 3.63 6.73 -10.98 -0.07 3.55 16 7 O -0.52 -5.51 11.79 5.56 0.07 -5.44 16 8 N -0.58 -2.80 2.84 -166.11 -0.47 -3.27 16 9 C 0.10 0.26 4.89 -4.05 -0.02 0.24 16 10 C -0.15 -0.64 5.56 -26.73 -0.15 -0.78 16 11 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 12 N -0.74 -7.94 5.56 -60.29 -0.33 -8.27 16 13 C 0.53 8.91 7.85 -10.99 -0.09 8.83 16 14 O -0.52 -10.73 15.86 5.56 0.09 -10.64 16 15 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 16 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 17 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 18 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 21 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.07 0.37 6.62 -67.93 -0.45 -0.08 16 26 C -0.19 -1.33 9.63 -26.69 -0.26 -1.59 16 27 C -0.18 -1.24 9.88 -26.69 -0.26 -1.51 16 28 H 0.07 0.26 8.13 -51.93 -0.42 -0.17 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.09 5.29 -51.93 -0.27 -0.19 16 31 H 0.09 0.16 7.98 -51.93 -0.41 -0.25 16 32 H 0.10 0.11 4.18 -51.93 -0.22 -0.11 16 33 H 0.07 0.28 7.14 -51.93 -0.37 -0.09 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 3.23 8.47 -40.82 -0.35 2.89 16 38 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 39 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.13 0.45 8.06 -51.93 -0.42 0.03 16 42 H 0.13 1.27 5.23 -52.10 -0.27 0.99 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.85 7.59 -51.93 -0.39 0.45 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -38.01 392.19 -7.95 -45.96 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.41 Total: -2.85 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.08 Total: -4.44 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.71 Total: -40.69 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.15 Total: -16.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.01 -7.95 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294568530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.099 kcal (2) G-P(sol) polarization free energy of solvation -38.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds