Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47545 * 2 1 4 4 C 1.47203 * 109.47031 * 120.00199 * 2 1 3 5 5 N 2.60805 * 109.47145 * 120.00362 * 2 1 3 6 6 C 1.50707 * 109.46909 * 239.99739 * 2 1 3 7 7 O 1.21273 * 120.00187 * 246.35293 * 6 2 1 8 8 N 1.34780 * 119.99300 * 66.35532 * 6 2 1 9 9 C 1.46493 * 120.00267 * 5.75925 * 8 6 2 10 10 C 1.53000 * 109.47073 * 86.58709 * 9 8 6 11 11 C 1.53002 * 109.46912 * 179.97438 * 10 9 8 12 12 N 1.46500 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00252 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99824 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00483 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47263 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99863 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31637 * 119.99658 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00272 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46901 * 59.99771 * 21 19 17 23 23 H 1.48497 * 109.47432 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47037 * 300.00261 * 21 19 17 25 25 C 1.46499 * 119.99471 * 185.75870 * 8 6 2 26 26 C 1.53002 * 117.49923 * 16.55345 * 25 8 6 27 27 C 1.53005 * 117.49973 * 307.89568 * 25 8 6 28 28 H 1.09000 * 109.47523 * 186.17780 * 1 2 3 29 29 H 1.09007 * 109.46486 * 306.17802 * 1 2 3 30 30 H 1.09000 * 109.47167 * 66.17262 * 1 2 3 31 31 H 1.09001 * 109.46789 * 206.58195 * 9 8 6 32 32 H 1.09000 * 109.47216 * 326.58205 * 9 8 6 33 33 H 1.09001 * 109.46893 * 299.99422 * 10 9 8 34 34 H 1.08991 * 109.47376 * 59.99808 * 10 9 8 35 35 H 1.09001 * 109.46916 * 299.99464 * 11 10 9 36 36 H 1.09000 * 109.47251 * 59.99573 * 11 10 9 37 37 H 0.97000 * 120.00402 * 0.02562 * 12 11 10 38 38 H 1.09003 * 109.46932 * 300.00842 * 15 13 12 39 39 H 1.09000 * 109.47039 * 60.00124 * 15 13 12 40 40 H 0.97002 * 119.99654 * 180.02562 * 20 19 17 41 41 H 1.09003 * 115.55106 * 162.22497 * 25 8 6 42 42 H 1.08996 * 117.49841 * 0.02562 * 26 25 8 43 43 H 1.09000 * 117.49589 * 145.02221 * 26 25 8 44 44 H 1.09003 * 117.49807 * 214.98398 * 27 25 8 45 45 H 1.09000 * 117.49623 * 359.97236 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3994 -1.2296 2.1294 6 6 2.0323 -0.7105 -1.2305 7 8 2.6316 -1.7593 -1.1230 8 7 1.8155 -0.1801 -2.4504 9 6 1.2046 1.1455 -2.5748 10 6 2.2936 2.2177 -2.5018 11 6 1.6557 3.6023 -2.6324 12 7 2.6983 4.6290 -2.5619 13 6 2.3681 5.9324 -2.6555 14 8 1.2078 6.2553 -2.7976 15 6 3.4407 6.9885 -2.5836 16 16 2.6860 8.6264 -2.7379 17 6 4.1243 9.6379 -2.6245 18 1 5.0958 9.1831 -2.4987 19 6 4.0090 11.0191 -2.6981 20 7 2.8249 11.5734 -2.8521 21 14 5.5338 12.0914 -2.5787 22 1 6.4667 11.7500 -3.6825 23 1 5.1436 13.5204 -2.6838 24 1 6.2033 11.8563 -1.2743 25 6 2.1907 -0.9295 -3.6521 26 6 2.4549 -2.4285 -3.4961 27 6 3.6214 -1.4659 -3.7321 28 1 -0.3634 -1.0217 0.1106 29 1 -0.3632 0.6067 0.8296 30 1 -0.3633 0.4152 -0.9401 31 1 0.6865 1.2185 -3.5310 32 1 0.4924 1.2950 -1.7633 33 1 2.8118 2.1448 -1.5456 34 1 3.0057 2.0682 -3.3133 35 1 1.1378 3.6749 -3.5888 36 1 0.9432 3.7520 -1.8212 37 1 3.6264 4.3708 -2.4486 38 1 3.9585 6.9159 -1.6271 39 1 4.1533 6.8385 -3.3946 40 1 2.7444 12.5386 -2.9039 41 1 1.7263 -0.5941 -4.5794 42 1 2.3490 -2.8571 -2.4996 43 1 2.1646 -3.0791 -4.3210 44 1 4.0982 -1.4836 -4.7122 45 1 4.2836 -1.2608 -2.8909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294568530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = -31.698897 kcal Electronic energy + Delta-G solvation = -25974.023289 eV Core-core repulsion = 22118.491807 eV Total energy + Delta-G solvation = -3855.531482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.82617 -40.48123 -38.27694 -37.53285 -36.83432 -35.60162 -34.55581 -33.66655 -32.30076 -30.33555 -27.66613 -26.79358 -25.80607 -24.32590 -23.23984 -22.68639 -21.68559 -20.77080 -19.77948 -18.77309 -18.16663 -17.67260 -17.12795 -16.93225 -16.85046 -16.65059 -16.51824 -15.91183 -15.74243 -15.60065 -15.26251 -14.72424 -14.62065 -14.36313 -14.22003 -14.06353 -13.82255 -13.74443 -13.64539 -13.30374 -13.16512 -13.13833 -12.85501 -12.73625 -12.62957 -12.61443 -12.45893 -12.10427 -11.95121 -11.71370 -11.58896 -11.19055 -11.10598 -10.88337 -10.53808 -10.23813 -9.97930 -9.47640 -8.62201 -8.32211 -6.09163 1.27239 1.32401 1.35052 1.45118 1.49854 1.60165 1.66763 1.71371 1.98246 2.29557 2.43386 2.73814 2.99719 3.01827 3.31376 3.36593 3.84783 3.91907 3.99320 4.02091 4.05030 4.10238 4.15844 4.23529 4.30837 4.36141 4.46797 4.58115 4.59915 4.72139 4.81091 4.82441 4.88722 4.95199 5.09324 5.16961 5.24336 5.36020 5.38528 5.44328 5.58220 5.71971 6.20451 6.22086 6.45319 6.60054 6.99114 7.09468 7.34800 8.76463 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.001840 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.391639 B =15212.325973 C =15647.145712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 H 0.173 0.827 4 C 0.242 3.758 5 N -0.474 5.474 6 C 0.523 3.477 7 O -0.562 6.562 8 N -0.568 5.568 9 C 0.094 3.906 10 C -0.142 4.142 11 C 0.119 3.881 12 N -0.715 5.715 13 C 0.534 3.466 14 O -0.564 6.564 15 C -0.133 4.133 16 S -0.150 6.150 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.995 3.005 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.263 1.263 25 C 0.083 3.917 26 C -0.205 4.205 27 C -0.192 4.192 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.165 0.835 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -26.451 -2.032 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.036 4.036 3 H 0.190 0.810 4 C -0.077 4.077 5 N -0.150 5.150 6 C 0.310 3.690 7 O -0.441 6.441 8 N -0.297 5.297 9 C -0.028 4.028 10 C -0.181 4.181 11 C -0.005 4.005 12 N -0.369 5.369 13 C 0.320 3.680 14 O -0.442 6.442 15 C -0.284 4.284 16 S 0.077 5.923 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.817 3.183 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.188 1.188 25 C -0.021 4.021 26 C -0.242 4.242 27 C -0.231 4.231 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.251 0.749 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.182 0.818 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.581 -27.144 -0.830 27.540 hybrid contribution 2.605 0.464 0.041 2.647 sum -1.976 -26.680 -0.789 26.765 Atomic orbital electron populations 1.22119 0.87118 1.04684 1.06983 1.19249 1.00664 1.00893 0.82815 0.81012 1.28809 0.92281 0.92625 0.93954 1.81225 1.09776 1.09944 1.14075 1.20390 0.78850 0.84814 0.84896 1.90664 1.42097 1.24879 1.86459 1.47223 1.60481 1.18311 1.03638 1.22190 0.95023 0.78100 1.07474 1.22177 0.99582 0.91933 1.04409 1.21381 0.90373 0.85834 1.02870 1.45758 1.12367 1.04193 1.74544 1.19924 0.88708 0.83965 0.75439 1.90696 1.21600 1.82216 1.49672 1.23402 1.01285 0.97179 1.06566 1.85516 1.14716 0.96187 1.95862 1.23175 0.94229 0.94154 1.57906 0.90037 1.26090 1.00460 0.98679 0.93895 1.70172 1.25116 1.11879 1.47482 0.85046 0.77320 0.76495 0.79411 1.18717 1.20494 1.18787 1.22042 0.98205 0.92600 0.89226 1.23715 1.02754 0.93019 1.04726 1.23224 0.91974 1.05039 1.02842 0.91848 0.88270 0.86564 0.86634 0.86200 0.90086 0.90081 0.91513 0.90756 0.74881 0.87434 0.87478 0.92035 0.81799 0.87605 0.87761 0.87100 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.34 8.75 71.98 0.63 0.29 16 2 C -0.01 -0.09 2.29 -13.34 -0.03 -0.12 16 3 H 0.17 0.17 6.72 -2.39 -0.02 0.16 16 4 C 0.24 4.27 13.89 89.44 1.24 5.51 16 5 N -0.47 -11.98 18.54 20.01 0.37 -11.61 16 6 C 0.52 6.31 6.73 87.66 0.59 6.91 16 7 O -0.56 -12.09 11.79 -3.01 -0.04 -12.13 16 8 N -0.57 -3.77 2.84 -797.83 -2.27 -6.04 16 9 C 0.09 0.08 4.89 86.38 0.42 0.50 16 10 C -0.14 -0.55 5.56 30.60 0.17 -0.38 16 11 C 0.12 1.35 5.67 86.38 0.49 1.84 16 12 N -0.71 -12.97 5.56 -463.05 -2.57 -15.54 16 13 C 0.53 16.93 7.85 87.66 0.69 17.62 16 14 O -0.56 -23.09 15.86 -3.03 -0.05 -23.14 16 15 C -0.13 -4.82 6.16 71.23 0.44 -4.38 16 16 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 17 C -0.55 -30.35 9.50 67.95 0.65 -29.70 16 18 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -54.74 13.22 21.65 0.29 -54.46 16 21 Si 1.00 42.64 29.55 68.60 2.03 44.67 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 C 0.08 0.67 6.62 44.99 0.30 0.97 16 26 C -0.20 -2.70 9.63 30.62 0.29 -2.41 16 27 C -0.19 -2.39 9.88 30.62 0.30 -2.08 16 28 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 29 H 0.10 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.12 -0.31 5.29 -2.39 -0.01 -0.32 16 31 H 0.12 -0.23 7.98 -2.39 -0.02 -0.25 16 32 H 0.12 -0.37 4.18 -2.39 -0.01 -0.38 16 33 H 0.08 0.24 7.14 -2.39 -0.02 0.22 16 34 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.41 5.07 8.47 -92.71 -0.79 4.29 16 38 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.16 0.37 8.06 -2.39 -0.02 0.35 16 42 H 0.11 2.10 5.23 -5.11 -0.03 2.07 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.27 7.59 -2.39 -0.02 1.25 16 Total: -1.00 -88.75 392.19 3.47 -85.27 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.23 Total: 6.32 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 6.65 Total: -4.22 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -4.18 Total: -87.64 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.08 Total: -35.27 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -88.75 3.47 -85.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294568530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.574 kcal (2) G-P(sol) polarization free energy of solvation -88.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds