Wall clock time and date at job start Sat Apr 11 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.47201 * 109.46934 * 240.00467 * 2 1 3 5 5 N 2.60802 * 109.47048 * 240.00191 * 2 1 3 6 6 C 1.50702 * 109.47392 * 120.00213 * 2 1 3 7 7 O 1.21279 * 120.00172 * 94.74497 * 6 2 1 8 8 N 1.34779 * 119.99842 * 274.74960 * 6 2 1 9 9 C 1.46926 * 120.63053 * 4.92541 * 8 6 2 10 10 C 1.53629 * 108.53867 * 126.36917 * 9 8 6 11 11 C 1.53035 * 109.24113 * 54.85908 * 10 9 8 12 12 C 1.53041 * 109.53839 * 298.50448 * 11 10 9 13 13 H 1.08999 * 109.49944 * 301.42024 * 12 11 10 14 14 N 1.46498 * 109.52398 * 181.33330 * 12 11 10 15 15 C 1.46500 * 120.00161 * 300.14637 * 14 12 11 16 16 C 1.34783 * 119.99722 * 120.14976 * 14 12 11 17 17 O 1.21276 * 119.99952 * 359.97438 * 16 14 12 18 18 C 1.50694 * 119.99589 * 180.02562 * 16 14 12 19 19 S 1.81001 * 109.46942 * 180.02562 * 18 16 14 20 20 C 1.76203 * 100.00324 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99645 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00098 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99881 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99843 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46964 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46926 * 119.99893 * 24 22 20 27 27 H 1.48505 * 109.46717 * 240.00000 * 24 22 20 28 28 C 1.46928 * 120.62949 * 185.20697 * 8 6 2 29 29 H 1.08997 * 109.46740 * 174.99928 * 1 2 3 30 30 H 1.09000 * 109.47135 * 54.99647 * 1 2 3 31 31 H 1.09001 * 109.46588 * 294.99248 * 1 2 3 32 32 H 1.08991 * 109.58724 * 246.20292 * 9 8 6 33 33 H 1.09000 * 109.58699 * 6.62908 * 9 8 6 34 34 H 1.09000 * 109.63661 * 294.86218 * 10 9 8 35 35 H 1.09004 * 109.45763 * 174.73967 * 10 9 8 36 36 H 1.09001 * 109.45912 * 178.48970 * 11 10 9 37 37 H 1.08997 * 109.46259 * 58.52996 * 11 10 9 38 38 H 1.09003 * 109.46680 * 90.00182 * 15 14 12 39 39 H 1.09001 * 109.47167 * 209.99940 * 15 14 12 40 40 H 1.08998 * 109.47426 * 330.00522 * 15 14 12 41 41 H 1.09003 * 109.47386 * 299.99335 * 18 16 14 42 42 H 1.08995 * 109.47762 * 60.00076 * 18 16 14 43 43 H 0.97003 * 120.00111 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.58397 * 353.37356 * 28 8 6 45 45 H 1.08993 * 109.58318 * 113.65307 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.3165 -1.8883 1.1771 8 7 2.1660 -0.0369 2.3902 9 6 1.7253 1.3605 2.4993 10 6 0.7668 1.4785 3.6940 11 6 1.4558 0.9374 4.9488 12 6 1.7955 -0.5414 4.7487 13 1 0.8825 -1.0997 4.5420 14 7 2.4264 -1.0673 5.9618 15 6 3.6750 -0.4787 6.4523 16 6 1.8579 -2.0928 6.6266 17 8 0.8241 -2.5798 6.2207 18 6 2.5066 -2.6334 7.8747 19 16 1.5116 -3.9961 8.5299 20 6 2.4732 -4.4254 9.9427 21 1 3.3797 -3.8818 10.1643 22 6 2.0650 -5.4615 10.7713 23 7 0.9599 -6.1236 10.5014 24 14 3.0840 -5.9161 12.2694 25 1 4.2708 -5.0269 12.3491 26 1 2.2612 -5.7554 13.4950 27 1 3.5306 -7.3277 12.1544 28 6 2.7606 -0.6841 3.5676 29 1 -0.3633 -1.0237 -0.0896 30 1 -0.3633 0.5895 -0.8418 31 1 -0.3632 0.4342 0.9315 32 1 2.5901 2.0051 2.6560 33 1 1.2095 1.6535 1.5848 34 1 -0.1366 0.9012 3.4973 35 1 0.5036 2.5253 3.8464 36 1 0.7886 1.0441 5.8041 37 1 2.3720 1.4991 5.1309 38 1 3.4471 0.3338 7.1424 39 1 4.2580 -1.2413 6.9687 40 1 4.2489 -0.0904 5.6109 41 1 3.5066 -2.9959 7.6368 42 1 2.5751 -1.8417 8.6208 43 1 0.6744 -6.8474 11.0806 44 1 2.9281 -1.7406 3.3581 45 1 3.7093 -0.2044 3.8080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295803546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:11 Heat of formation + Delta-G solvation = -36.724754 kcal Electronic energy + Delta-G solvation = -27009.320122 eV Core-core repulsion = 23153.570702 eV Total energy + Delta-G solvation = -3855.749419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06264 -39.66115 -37.82493 -36.84867 -35.40433 -33.87507 -32.74184 -32.43596 -31.08057 -28.60870 -26.93765 -26.48500 -25.50570 -25.15319 -23.42796 -21.79305 -19.87069 -19.27995 -18.09934 -17.87063 -17.68509 -16.81329 -16.10726 -15.99404 -15.58811 -15.45491 -14.81395 -14.77157 -14.63996 -14.44105 -14.04847 -13.89945 -13.63262 -13.37253 -13.24089 -13.16761 -13.04301 -12.97485 -12.69671 -12.57780 -12.37695 -12.28881 -12.04698 -11.98479 -11.73185 -11.48839 -11.29903 -11.07875 -11.03092 -10.95575 -10.75696 -10.23295 -9.80695 -9.43435 -9.24395 -9.08061 -8.53675 -8.23219 -6.51093 -6.22391 -3.93071 1.96020 2.03113 2.39335 2.62308 2.93682 3.01274 3.21068 3.25269 3.30439 3.36773 3.57664 3.87451 4.19232 4.25035 4.32211 4.37472 4.43306 4.44465 4.60797 4.81811 4.94801 4.97569 4.99574 5.02567 5.06806 5.12444 5.13376 5.27896 5.35998 5.37526 5.49871 5.50947 5.57793 5.65305 5.67381 5.84228 5.90365 5.90989 6.01003 6.10952 6.58314 6.80710 7.14447 7.44603 7.59156 7.62713 8.34592 8.49829 9.23004 10.85082 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.002246 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.095467 B =12464.555538 C =13002.773982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.136 0.864 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.524 3.476 7 O -0.518 6.518 8 N -0.605 5.605 9 C 0.098 3.902 10 C -0.133 4.133 11 C -0.129 4.129 12 C 0.129 3.871 13 H 0.107 0.893 14 N -0.619 5.619 15 C 0.077 3.923 16 C 0.535 3.465 17 O -0.512 6.512 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.103 3.897 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.099 0.901 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 23.796 -16.449 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.153 0.847 4 C -0.101 4.101 5 N -0.084 5.084 6 C 0.309 3.691 7 O -0.392 6.392 8 N -0.339 5.339 9 C -0.025 4.025 10 C -0.171 4.171 11 C -0.168 4.168 12 C 0.024 3.976 13 H 0.125 0.875 14 N -0.356 5.356 15 C -0.066 4.066 16 C 0.323 3.677 17 O -0.386 6.386 18 C -0.300 4.300 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.020 4.020 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.316 21.451 -18.421 28.306 hybrid contribution 1.846 0.609 1.968 2.766 sum 3.163 22.060 -16.453 27.701 Atomic orbital electron populations 1.21835 0.89035 1.04975 1.04499 1.18868 0.99288 0.99742 0.85597 0.84656 1.28095 0.94005 0.93952 0.94030 1.81220 1.07696 1.07571 1.11924 1.19997 0.78238 0.87033 0.83831 1.90826 1.48866 1.15192 1.84337 1.47942 1.61865 1.13356 1.10717 1.22075 0.98778 0.81620 0.99978 1.21987 0.98753 1.02293 0.94099 1.21897 1.01354 0.95154 0.98360 1.21259 0.97588 0.94907 0.83831 0.87476 1.47819 1.25783 1.35374 1.26579 1.21784 0.85821 0.99284 0.99714 1.20399 0.84475 0.78297 0.84518 1.90699 1.23077 1.57518 1.67299 1.23549 1.04551 1.04971 0.96890 1.85435 1.32343 1.34938 1.30836 1.22888 1.12008 1.21592 1.11737 0.90883 1.25000 0.95389 0.95185 0.98067 1.70027 1.21533 1.20949 1.37719 0.86115 0.79683 0.78416 0.81266 1.19617 1.20572 1.20563 1.22005 0.95683 1.00578 0.83737 0.90527 0.89965 0.89671 0.90464 0.89103 0.90712 0.89844 0.90694 0.91305 0.92555 0.90436 0.91385 0.89161 0.89190 0.92225 0.88232 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.54 8.83 37.16 0.33 -0.21 16 2 C -0.01 -0.06 2.23 -94.56 -0.21 -0.27 16 3 H 0.14 0.18 6.73 -51.93 -0.35 -0.17 16 4 C 0.22 2.11 14.02 -20.76 -0.29 1.82 16 5 N -0.41 -5.24 18.54 42.15 0.78 -4.46 16 6 C 0.52 4.90 6.78 -10.98 -0.07 4.82 16 7 O -0.52 -7.68 15.67 5.56 0.09 -7.59 16 8 N -0.60 -4.44 2.97 -172.51 -0.51 -4.95 16 9 C 0.10 0.31 5.95 -3.48 -0.02 0.29 16 10 C -0.13 -0.56 6.10 -26.39 -0.16 -0.72 16 11 C -0.13 -0.92 5.14 -26.69 -0.14 -1.05 16 12 C 0.13 1.38 2.67 -67.81 -0.18 1.20 16 13 H 0.11 1.50 6.90 -51.93 -0.36 1.14 16 14 N -0.62 -7.95 2.77 -173.80 -0.48 -8.43 16 15 C 0.08 0.70 9.32 59.85 0.56 1.26 16 16 C 0.54 9.81 7.69 -10.99 -0.08 9.73 16 17 O -0.51 -11.49 15.19 5.56 0.08 -11.41 16 18 C -0.15 -2.95 4.71 36.00 0.17 -2.78 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.09 9.50 30.94 0.29 -14.80 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.10 0.98 5.79 -3.71 -0.02 0.96 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.08 0.19 7.19 -51.93 -0.37 -0.19 16 32 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.09 0.04 4.89 -51.93 -0.25 -0.21 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.39 7.71 -51.93 -0.40 -0.01 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.74 6.44 -51.93 -0.33 0.41 16 40 H 0.07 0.44 6.35 -51.93 -0.33 0.11 16 41 H 0.09 1.66 7.40 -51.91 -0.38 1.27 16 42 H 0.09 1.63 8.11 -51.92 -0.42 1.21 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.10 1.30 7.00 -51.93 -0.36 0.93 16 45 H 0.07 0.56 6.49 -51.93 -0.34 0.23 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -39.54 382.36 -7.12 -46.66 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -6.41 Total: -4.81 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 0.07 Total: 2.23 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.52 Total: -43.23 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.17 Total: -19.00 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.54 -7.12 -46.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295803546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.936 kcal (2) G-P(sol) polarization free energy of solvation -39.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds