Wall clock time and date at job start Sat Apr 11 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47501 * 2 1 4 4 C 1.47202 * 109.47135 * 120.00251 * 2 1 3 5 5 N 2.60801 * 109.47013 * 120.00275 * 2 1 3 6 6 C 1.50703 * 109.47013 * 239.99867 * 2 1 3 7 7 O 1.21281 * 120.00371 * 274.70471 * 6 2 1 8 8 N 1.34777 * 119.99503 * 94.70037 * 6 2 1 9 9 C 1.46924 * 120.63651 * 354.61084 * 8 6 2 10 10 C 1.53192 * 108.77662 * 233.59052 * 9 8 6 11 11 C 1.53045 * 109.31116 * 305.36020 * 10 9 8 12 12 C 1.53041 * 109.53645 * 61.36973 * 11 10 9 13 13 H 1.08996 * 109.49802 * 58.58492 * 12 11 10 14 14 N 1.46496 * 109.49663 * 178.68444 * 12 11 10 15 15 C 1.46496 * 120.00333 * 59.99953 * 14 12 11 16 16 C 1.34784 * 119.99850 * 240.00206 * 14 12 11 17 17 O 1.21284 * 119.99673 * 359.97438 * 16 14 12 18 18 C 1.50699 * 120.00065 * 180.02562 * 16 14 12 19 19 S 1.80997 * 109.46849 * 179.97438 * 18 16 14 20 20 C 1.76205 * 99.99769 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99874 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00291 * 179.97438 * 20 19 18 23 23 N 1.31639 * 119.99520 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00343 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47083 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47010 * 119.99871 * 24 22 20 27 27 H 1.48499 * 109.47295 * 239.99711 * 24 22 20 28 28 C 1.46933 * 120.62589 * 174.59380 * 8 6 2 29 29 H 1.09002 * 109.47239 * 64.98829 * 1 2 3 30 30 H 1.09001 * 109.47926 * 184.99463 * 1 2 3 31 31 H 1.09006 * 109.47048 * 304.99165 * 1 2 3 32 32 H 1.09004 * 109.58456 * 353.37528 * 9 8 6 33 33 H 1.08998 * 109.58304 * 113.65388 * 9 8 6 34 34 H 1.09006 * 109.49484 * 185.41527 * 10 9 8 35 35 H 1.08999 * 109.49913 * 65.31597 * 10 9 8 36 36 H 1.08999 * 109.45919 * 301.35083 * 11 10 9 37 37 H 1.09000 * 109.45450 * 181.38839 * 11 10 9 38 38 H 1.08997 * 109.47507 * 89.99888 * 15 14 12 39 39 H 1.09001 * 109.46889 * 210.00340 * 15 14 12 40 40 H 1.09003 * 109.47094 * 329.99684 * 15 14 12 41 41 H 1.08998 * 109.46535 * 299.99393 * 18 16 14 42 42 H 1.08999 * 109.47380 * 59.98941 * 18 16 14 43 43 H 0.97003 * 119.99388 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.58844 * 6.62380 * 28 8 6 45 45 H 1.09002 * 109.58487 * 246.19724 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 1.2019 5 7 2.3992 -1.2295 2.1294 6 6 2.0322 -0.7105 -1.2305 7 8 2.1532 -1.9172 -1.2271 8 7 2.3470 -0.0047 -2.3347 9 6 2.0956 1.4416 -2.3958 10 6 1.2676 1.7456 -3.6483 11 6 1.9825 1.1795 -4.8774 12 6 2.1110 -0.3393 -4.7403 13 1 1.1197 -0.7804 -4.6368 14 7 2.7673 -0.8839 -5.9315 15 6 4.1189 -0.4456 -6.2881 16 6 2.1276 -1.7883 -6.6993 17 8 1.0088 -2.1515 -6.4037 18 6 2.8029 -2.3490 -7.9243 19 16 1.6967 -3.5295 -8.7358 20 6 2.7092 -4.0132 -10.0945 21 1 3.6945 -3.5868 -10.2123 22 6 2.2405 -4.9420 -11.0132 23 7 1.0397 -5.4620 -10.8692 24 14 3.3135 -5.4542 -12.4539 25 1 4.6083 -4.7302 -12.3887 26 1 3.5612 -6.9171 -12.3911 27 1 2.6241 -5.1231 -13.7269 28 6 2.9485 -0.6670 -3.5002 29 1 -0.3634 0.4345 -0.9313 30 1 -0.3635 -1.0237 0.0895 31 1 -0.3633 0.5894 0.8419 32 1 1.5447 1.7545 -1.5088 33 1 3.0446 1.9757 -2.4439 34 1 1.1556 2.8244 -3.7573 35 1 0.2842 1.2849 -3.5550 36 1 2.9754 1.6223 -4.9560 37 1 1.4076 1.4160 -5.7728 38 1 4.8502 -1.0975 -5.8105 39 1 4.2423 -0.4923 -7.3701 40 1 4.2697 0.5794 -5.9492 41 1 3.0374 -1.5375 -8.6132 42 1 3.7231 -2.8551 -7.6324 43 1 0.7124 -6.1114 -11.5111 44 1 2.9604 -1.7454 -3.3419 45 1 3.9669 -0.3050 -3.6410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295803547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:13 Heat of formation + Delta-G solvation = -36.293881 kcal Electronic energy + Delta-G solvation = -26988.124627 eV Core-core repulsion = 23132.393892 eV Total energy + Delta-G solvation = -3855.730735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05617 -39.66349 -37.83960 -36.87072 -35.39296 -33.84920 -32.75451 -32.43479 -31.11724 -28.62734 -26.91848 -26.48632 -25.50779 -25.15733 -23.43419 -21.77702 -19.86686 -19.28142 -18.14087 -17.90798 -17.68576 -16.80256 -16.10511 -15.93489 -15.58485 -15.41679 -14.81410 -14.77273 -14.68812 -14.41900 -14.05260 -13.90887 -13.68874 -13.36502 -13.27058 -13.12534 -13.05300 -12.97018 -12.72450 -12.56817 -12.38184 -12.29271 -12.08333 -12.00232 -11.71192 -11.45942 -11.27323 -11.07955 -11.03389 -10.96722 -10.76089 -10.22452 -9.80961 -9.42401 -9.24180 -9.08044 -8.54752 -8.23327 -6.51119 -6.22470 -3.93143 1.92670 2.04093 2.36935 2.61333 2.94175 3.00609 3.21015 3.25302 3.30440 3.38368 3.57661 3.86769 4.19171 4.20787 4.32557 4.37667 4.43151 4.46049 4.61349 4.86450 4.94389 4.98332 5.00647 5.01600 5.09418 5.10504 5.12777 5.27120 5.37447 5.39677 5.51138 5.52551 5.56434 5.63307 5.68314 5.83601 5.89956 5.90849 6.00710 6.10938 6.58182 6.80834 7.11992 7.44567 7.59110 7.62539 8.34543 8.49709 9.22955 10.84998 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.002234 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.869757 B =12528.832589 C =13021.040297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 H 0.135 0.865 4 C 0.218 3.782 5 N -0.410 5.410 6 C 0.524 3.476 7 O -0.517 6.517 8 N -0.605 5.605 9 C 0.098 3.902 10 C -0.132 4.132 11 C -0.131 4.131 12 C 0.129 3.871 13 H 0.107 0.893 14 N -0.619 5.619 15 C 0.076 3.924 16 C 0.535 3.465 17 O -0.513 6.513 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.104 3.896 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.099 0.901 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.363 22.164 17.900 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 H 0.153 0.847 4 C -0.101 4.101 5 N -0.085 5.085 6 C 0.309 3.691 7 O -0.391 6.391 8 N -0.339 5.339 9 C -0.024 4.024 10 C -0.171 4.171 11 C -0.169 4.169 12 C 0.024 3.976 13 H 0.125 0.875 14 N -0.355 5.355 15 C -0.067 4.067 16 C 0.323 3.677 17 O -0.386 6.386 18 C -0.300 4.300 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.019 4.019 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.219 20.009 19.661 28.139 hybrid contribution 2.014 0.403 -1.770 2.711 sum 4.233 20.412 17.891 27.471 Atomic orbital electron populations 1.21789 0.88926 1.04963 1.04448 1.18902 0.99407 0.99685 0.85609 0.84733 1.28128 0.93991 0.93949 0.94061 1.81225 1.07796 1.07644 1.11800 1.19991 0.77829 0.87491 0.83782 1.90822 1.51777 1.13722 1.82816 1.47971 1.62289 1.08987 1.14652 1.21975 1.00776 0.80016 0.99640 1.21906 0.99651 1.01808 0.93724 1.21916 1.01412 0.94841 0.98738 1.21267 0.98619 0.93794 0.83924 0.87471 1.47815 1.17155 1.44269 1.26300 1.21793 0.82958 0.99855 1.02105 1.20402 0.85867 0.77624 0.83793 1.90701 1.18812 1.58013 1.71076 1.23550 1.04853 1.04260 0.97296 1.85433 1.20889 1.48438 1.28779 1.22889 1.04009 1.29631 1.11689 0.90884 1.25002 0.95453 0.95240 0.97956 1.70035 1.16467 1.27801 1.35930 0.86113 0.79890 0.78452 0.81012 1.19620 1.20563 1.20573 1.21998 0.96065 1.00212 0.83602 0.89730 0.90491 0.90019 0.89144 0.90499 0.89800 0.90701 0.91259 0.90635 0.92643 0.90403 0.91243 0.89181 0.89173 0.92231 0.88244 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 9.03 37.15 0.34 -0.23 16 2 C -0.01 -0.06 2.30 -94.56 -0.22 -0.28 16 3 H 0.14 0.19 6.19 -51.93 -0.32 -0.14 16 4 C 0.22 2.08 14.14 -20.76 -0.29 1.79 16 5 N -0.41 -5.17 18.54 42.15 0.78 -4.39 16 6 C 0.52 4.93 6.67 -10.98 -0.07 4.86 16 7 O -0.52 -7.65 15.85 5.56 0.09 -7.56 16 8 N -0.60 -4.51 2.97 -172.76 -0.51 -5.02 16 9 C 0.10 0.32 6.15 -3.71 -0.02 0.30 16 10 C -0.13 -0.56 6.08 -26.61 -0.16 -0.72 16 11 C -0.13 -0.92 5.12 -26.69 -0.14 -1.06 16 12 C 0.13 1.38 2.67 -67.81 -0.18 1.20 16 13 H 0.11 1.50 6.90 -51.93 -0.36 1.14 16 14 N -0.62 -7.96 2.76 -173.80 -0.48 -8.44 16 15 C 0.08 0.69 9.20 59.84 0.55 1.24 16 16 C 0.54 9.81 7.69 -10.98 -0.08 9.72 16 17 O -0.51 -11.47 15.19 5.55 0.08 -11.39 16 18 C -0.15 -2.95 4.71 36.01 0.17 -2.78 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.08 9.50 30.94 0.29 -14.79 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.10 1.01 5.80 -3.71 -0.02 0.99 16 29 H 0.08 0.22 8.11 -51.93 -0.42 -0.20 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.04 5.51 -51.93 -0.29 -0.24 16 33 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.38 6.72 -51.93 -0.35 0.03 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 40 H 0.07 0.43 6.45 -51.93 -0.34 0.10 16 41 H 0.09 1.62 7.40 -51.92 -0.38 1.24 16 42 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.10 1.31 7.00 -51.93 -0.36 0.94 16 45 H 0.07 0.58 7.51 -51.93 -0.39 0.19 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -39.39 384.00 -7.16 -46.55 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -6.47 Total: -4.76 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 0.06 Total: 2.20 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.52 Total: -43.22 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.17 Total: -18.95 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.39 -7.16 -46.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295803547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.253 kcal (2) G-P(sol) polarization free energy of solvation -39.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds