Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46791 * 2 1 4 4 C 1.47193 * 109.47467 * 119.99533 * 2 1 3 5 5 N 2.60795 * 109.47267 * 119.99615 * 2 1 3 6 6 C 1.50703 * 109.47131 * 240.00182 * 2 1 3 7 7 O 1.21282 * 119.99210 * 257.54558 * 6 2 1 8 8 N 1.34769 * 120.00297 * 77.55051 * 6 2 1 9 9 C 1.46927 * 120.63143 * 5.15045 * 8 6 2 10 10 C 1.53626 * 108.54478 * 126.37225 * 9 8 6 11 11 C 1.53040 * 109.24072 * 54.85545 * 10 9 8 12 12 C 1.53039 * 109.53951 * 298.51718 * 11 10 9 13 13 H 1.09001 * 109.49641 * 301.41060 * 12 11 10 14 14 N 1.46501 * 109.52509 * 181.33568 * 12 11 10 15 15 C 1.46500 * 119.99650 * 300.13876 * 14 12 11 16 16 C 1.34775 * 120.00243 * 120.14180 * 14 12 11 17 17 O 1.21283 * 120.00195 * 0.02562 * 16 14 12 18 18 C 1.50705 * 119.99763 * 179.97438 * 16 14 12 19 19 S 1.81005 * 109.46889 * 179.97438 * 18 16 14 20 20 C 1.76196 * 99.99710 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00365 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99833 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99861 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00002 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47097 * 60.00472 * 24 22 20 26 26 H 1.48500 * 109.47070 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47086 * 300.00420 * 24 22 20 28 28 C 1.46925 * 120.63327 * 185.43697 * 8 6 2 29 29 H 1.08993 * 109.47146 * 173.99557 * 1 2 3 30 30 H 1.09002 * 109.47144 * 293.99593 * 1 2 3 31 31 H 1.08999 * 109.47203 * 53.99559 * 1 2 3 32 32 H 1.08997 * 109.58932 * 246.20677 * 9 8 6 33 33 H 1.09001 * 109.58845 * 6.63288 * 9 8 6 34 34 H 1.08996 * 109.63112 * 294.86991 * 10 9 8 35 35 H 1.08994 * 109.46161 * 174.74077 * 10 9 8 36 36 H 1.08995 * 109.46154 * 178.49188 * 11 10 9 37 37 H 1.09004 * 109.45841 * 58.53079 * 11 10 9 38 38 H 1.08997 * 109.46913 * 90.00410 * 15 14 12 39 39 H 1.09000 * 109.47070 * 209.99943 * 15 14 12 40 40 H 1.09002 * 109.47445 * 330.00600 * 15 14 12 41 41 H 1.08998 * 109.47106 * 299.99573 * 18 16 14 42 42 H 1.08999 * 109.46943 * 60.00355 * 18 16 14 43 43 H 0.97008 * 119.99998 * 180.02562 * 23 22 20 44 44 H 1.09005 * 109.58413 * 353.37046 * 28 8 6 45 45 H 1.08998 * 109.58807 * 113.79326 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2019 5 7 2.3994 -1.2292 2.1294 6 6 2.0324 -0.7104 -1.2305 7 8 2.4480 -1.8467 -1.1473 8 7 2.0198 -0.0830 -2.4232 9 6 1.6258 1.3290 -2.5222 10 6 2.7390 2.0969 -3.2511 11 6 3.0155 1.4260 -4.5985 12 6 3.4929 -0.0095 -4.3671 13 1 4.3931 0.0011 -3.7526 14 7 3.7880 -0.6411 -5.6556 15 6 2.7338 -0.7751 -6.6640 16 6 5.0291 -1.0989 -5.9132 17 8 5.9017 -0.9885 -5.0781 18 6 5.3324 -1.7492 -7.2385 19 16 7.0704 -2.2531 -7.2796 20 6 7.1453 -2.9622 -8.8908 21 1 6.2635 -2.9812 -9.5140 22 6 8.3379 -3.4956 -9.3595 23 7 9.4128 -3.4720 -8.6002 24 14 8.4175 -4.2468 -11.0680 25 1 8.0633 -3.2176 -12.0782 26 1 9.7932 -4.7425 -11.3271 27 1 7.4594 -5.3778 -11.1565 28 6 2.3937 -0.7997 -3.6501 29 1 -0.3633 -1.0220 -0.1075 30 1 -0.3633 0.4179 0.9389 31 1 -0.3633 0.6041 -0.8313 32 1 0.6947 1.4102 -3.0829 33 1 1.4899 1.7414 -1.5224 34 1 3.6463 2.0876 -2.6471 35 1 2.4220 3.1266 -3.4157 36 1 3.7862 1.9836 -5.1305 37 1 2.1015 1.4133 -5.1922 38 1 2.7291 0.1071 -7.3041 39 1 2.9207 -1.6622 -7.2693 40 1 1.7673 -0.8700 -6.1691 41 1 4.6967 -2.6251 -7.3673 42 1 5.1411 -1.0396 -8.0435 43 1 10.2465 -3.8444 -8.9279 44 1 2.7646 -1.7924 -3.3947 45 1 1.5239 -0.8886 -4.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295803548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = -36.097507 kcal Electronic energy + Delta-G solvation = -26971.966717 eV Core-core repulsion = 23116.244497 eV Total energy + Delta-G solvation = -3855.722220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05697 -39.65855 -37.82250 -36.81808 -35.40548 -33.90727 -32.69616 -32.42988 -31.09349 -28.60699 -26.94148 -26.46513 -25.49876 -25.20509 -23.43997 -21.71733 -19.93688 -19.26636 -18.11043 -17.82017 -17.67583 -16.82460 -16.29526 -15.97613 -15.45835 -15.41459 -14.80614 -14.79544 -14.60111 -14.44473 -14.04307 -13.93213 -13.57636 -13.34491 -13.27081 -13.15555 -13.04429 -13.01468 -12.71852 -12.57422 -12.36636 -12.33443 -12.05734 -11.97883 -11.74332 -11.45609 -11.28343 -11.05315 -11.04133 -10.95110 -10.76534 -10.23338 -9.82080 -9.42911 -9.24224 -9.06021 -8.53478 -8.23422 -6.50633 -6.21406 -3.92411 1.95465 2.07683 2.42943 2.63665 2.94240 3.01663 3.23249 3.25119 3.28950 3.35836 3.57865 3.87595 4.19377 4.20089 4.29770 4.39431 4.42118 4.48628 4.60991 4.81958 4.91619 4.97023 4.99077 5.02139 5.03679 5.12529 5.13733 5.28061 5.35999 5.37201 5.42718 5.50636 5.57838 5.64984 5.67530 5.84649 5.90550 5.91385 6.01476 6.11099 6.58633 6.80961 7.18286 7.45022 7.59009 7.63137 8.34733 8.50428 9.23528 10.85934 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020692 B = 0.002253 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.841861 B =12425.116800 C =13092.071445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.011 4.011 3 H 0.138 0.862 4 C 0.217 3.783 5 N -0.407 5.407 6 C 0.524 3.476 7 O -0.519 6.519 8 N -0.604 5.604 9 C 0.100 3.900 10 C -0.134 4.134 11 C -0.129 4.129 12 C 0.128 3.872 13 H 0.107 0.893 14 N -0.619 5.619 15 C 0.077 3.923 16 C 0.535 3.465 17 O -0.512 6.512 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.104 3.896 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.099 0.901 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.646 15.357 10.400 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 H 0.155 0.845 4 C -0.102 4.102 5 N -0.082 5.082 6 C 0.309 3.691 7 O -0.393 6.393 8 N -0.338 5.338 9 C -0.023 4.023 10 C -0.173 4.173 11 C -0.167 4.167 12 C 0.023 3.977 13 H 0.125 0.875 14 N -0.355 5.355 15 C -0.066 4.066 16 C 0.323 3.677 17 O -0.386 6.386 18 C -0.299 4.299 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.019 4.019 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.333 14.021 13.098 29.444 hybrid contribution -1.115 -0.312 -2.638 2.881 sum -23.448 13.709 10.460 29.106 Atomic orbital electron populations 1.21790 0.89168 1.04612 1.04453 1.18871 0.99083 0.99984 0.85647 0.84475 1.28065 0.94081 0.94030 0.94040 1.81221 1.07400 1.07512 1.12066 1.19989 0.78602 0.86734 0.83786 1.90830 1.45170 1.18321 1.84976 1.47924 1.67216 1.12051 1.06617 1.22077 0.98187 0.79963 1.02063 1.21999 0.99234 0.99370 0.96691 1.21894 1.02133 0.95395 0.97297 1.21262 0.99389 0.91438 0.85574 0.87544 1.47816 1.10667 1.61438 1.15628 1.21783 0.90575 1.02492 0.91733 1.20409 0.81071 0.77234 0.89019 1.90705 1.45060 1.55061 1.47755 1.23550 1.07569 1.02713 0.96110 1.85444 0.99721 1.76138 1.22188 1.22805 0.99244 1.45194 1.01131 0.90980 1.24996 0.94682 0.95482 0.98435 1.70009 1.00687 1.43012 1.36531 0.86225 0.77435 0.79345 0.82496 1.19939 1.20816 1.19930 1.22003 0.97891 0.97518 0.84530 0.90799 0.90097 0.89738 0.90337 0.89210 0.90778 0.89837 0.90721 0.91276 0.92569 0.90440 0.91371 0.89150 0.89197 0.92112 0.88224 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.37 8.99 37.16 0.33 -0.04 16 2 C -0.01 -0.06 2.25 -94.56 -0.21 -0.28 16 3 H 0.14 0.24 6.45 -51.93 -0.34 -0.09 16 4 C 0.22 2.18 13.95 -20.76 -0.29 1.89 16 5 N -0.41 -5.43 18.54 42.15 0.78 -4.65 16 6 C 0.52 4.88 6.85 -10.99 -0.08 4.81 16 7 O -0.52 -7.72 15.56 5.56 0.09 -7.63 16 8 N -0.60 -4.39 2.97 -172.51 -0.51 -4.90 16 9 C 0.10 0.31 5.64 -3.48 -0.02 0.29 16 10 C -0.13 -0.61 6.10 -26.39 -0.16 -0.77 16 11 C -0.13 -0.93 5.14 -26.69 -0.14 -1.07 16 12 C 0.13 1.40 2.67 -67.81 -0.18 1.22 16 13 H 0.11 1.54 6.90 -51.93 -0.36 1.19 16 14 N -0.62 -8.01 2.77 -173.80 -0.48 -8.49 16 15 C 0.08 0.69 9.33 59.85 0.56 1.25 16 16 C 0.53 9.91 7.69 -10.98 -0.08 9.82 16 17 O -0.51 -11.66 15.19 5.55 0.08 -11.58 16 18 C -0.15 -2.96 4.71 36.01 0.17 -2.79 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 20 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 24 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.10 0.98 5.79 -3.71 -0.02 0.96 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.08 0.03 7.25 -51.93 -0.38 -0.35 16 32 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.09 0.04 5.26 -51.93 -0.27 -0.24 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.39 7.72 -51.93 -0.40 -0.01 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 40 H 0.07 0.43 6.34 -51.93 -0.33 0.10 16 41 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 42 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.10 1.29 7.00 -51.93 -0.36 0.93 16 45 H 0.07 0.54 6.48 -51.93 -0.34 0.20 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -39.99 382.24 -7.12 -47.11 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -6.42 Total: -4.95 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 0.08 Total: 2.40 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.52 Total: -43.56 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.17 Total: -19.21 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.99 -7.12 -47.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295803548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.016 kcal (2) G-P(sol) polarization free energy of solvation -39.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds