Wall clock time and date at job start Sat Apr 11 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46791 * 2 1 4 4 C 1.47193 * 109.47467 * 119.99533 * 2 1 3 5 5 N 2.60795 * 109.47267 * 119.99615 * 2 1 3 6 6 C 1.50703 * 109.47131 * 240.00182 * 2 1 3 7 7 O 1.21282 * 119.99210 * 257.54558 * 6 2 1 8 8 N 1.34769 * 120.00297 * 77.55051 * 6 2 1 9 9 C 1.46927 * 120.63143 * 5.15045 * 8 6 2 10 10 C 1.53626 * 108.54478 * 126.37225 * 9 8 6 11 11 C 1.53040 * 109.24072 * 54.85545 * 10 9 8 12 12 C 1.53039 * 109.53951 * 298.51718 * 11 10 9 13 13 H 1.09001 * 109.49641 * 301.41060 * 12 11 10 14 14 N 1.46501 * 109.52509 * 181.33568 * 12 11 10 15 15 C 1.46500 * 119.99650 * 300.13876 * 14 12 11 16 16 C 1.34775 * 120.00243 * 120.14180 * 14 12 11 17 17 O 1.21283 * 120.00195 * 0.02562 * 16 14 12 18 18 C 1.50705 * 119.99763 * 179.97438 * 16 14 12 19 19 S 1.81005 * 109.46889 * 179.97438 * 18 16 14 20 20 C 1.76196 * 99.99710 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00365 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99833 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99861 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00002 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47097 * 60.00472 * 24 22 20 26 26 H 1.48500 * 109.47070 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47086 * 300.00420 * 24 22 20 28 28 C 1.46925 * 120.63327 * 185.43697 * 8 6 2 29 29 H 1.08993 * 109.47146 * 173.99557 * 1 2 3 30 30 H 1.09002 * 109.47144 * 293.99593 * 1 2 3 31 31 H 1.08999 * 109.47203 * 53.99559 * 1 2 3 32 32 H 1.08997 * 109.58932 * 246.20677 * 9 8 6 33 33 H 1.09001 * 109.58845 * 6.63288 * 9 8 6 34 34 H 1.08996 * 109.63112 * 294.86991 * 10 9 8 35 35 H 1.08994 * 109.46161 * 174.74077 * 10 9 8 36 36 H 1.08995 * 109.46154 * 178.49188 * 11 10 9 37 37 H 1.09004 * 109.45841 * 58.53079 * 11 10 9 38 38 H 1.08997 * 109.46913 * 90.00410 * 15 14 12 39 39 H 1.09000 * 109.47070 * 209.99943 * 15 14 12 40 40 H 1.09002 * 109.47445 * 330.00600 * 15 14 12 41 41 H 1.08998 * 109.47106 * 299.99573 * 18 16 14 42 42 H 1.08999 * 109.46943 * 60.00355 * 18 16 14 43 43 H 0.97008 * 119.99998 * 180.02562 * 23 22 20 44 44 H 1.09005 * 109.58413 * 353.37046 * 28 8 6 45 45 H 1.08998 * 109.58807 * 113.79326 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2019 5 7 2.3994 -1.2292 2.1294 6 6 2.0324 -0.7104 -1.2305 7 8 2.4480 -1.8467 -1.1473 8 7 2.0198 -0.0830 -2.4232 9 6 1.6258 1.3290 -2.5222 10 6 2.7390 2.0969 -3.2511 11 6 3.0155 1.4260 -4.5985 12 6 3.4929 -0.0095 -4.3671 13 1 4.3931 0.0011 -3.7526 14 7 3.7880 -0.6411 -5.6556 15 6 2.7338 -0.7751 -6.6640 16 6 5.0291 -1.0989 -5.9132 17 8 5.9017 -0.9885 -5.0781 18 6 5.3324 -1.7492 -7.2385 19 16 7.0704 -2.2531 -7.2796 20 6 7.1453 -2.9622 -8.8908 21 1 6.2635 -2.9812 -9.5140 22 6 8.3379 -3.4956 -9.3595 23 7 9.4128 -3.4720 -8.6002 24 14 8.4175 -4.2468 -11.0680 25 1 8.0633 -3.2176 -12.0782 26 1 9.7932 -4.7425 -11.3271 27 1 7.4594 -5.3778 -11.1565 28 6 2.3937 -0.7997 -3.6501 29 1 -0.3633 -1.0220 -0.1075 30 1 -0.3633 0.4179 0.9389 31 1 -0.3633 0.6041 -0.8313 32 1 0.6947 1.4102 -3.0829 33 1 1.4899 1.7414 -1.5224 34 1 3.6463 2.0876 -2.6471 35 1 2.4220 3.1266 -3.4157 36 1 3.7862 1.9836 -5.1305 37 1 2.1015 1.4133 -5.1922 38 1 2.7291 0.1071 -7.3041 39 1 2.9207 -1.6622 -7.2693 40 1 1.7673 -0.8700 -6.1691 41 1 4.6967 -2.6251 -7.3673 42 1 5.1411 -1.0396 -8.0435 43 1 10.2465 -3.8444 -8.9279 44 1 2.7646 -1.7924 -3.3947 45 1 1.5239 -0.8886 -4.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295803548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:04 Heat of formation + Delta-G solvation = -65.785618 kcal Electronic energy + Delta-G solvation = -26973.254090 eV Core-core repulsion = 23116.244497 eV Total energy + Delta-G solvation = -3857.009593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79887 -40.82772 -38.72422 -37.66658 -36.45211 -34.59897 -34.56694 -33.29299 -32.02224 -29.89460 -27.82521 -27.66660 -26.97368 -25.66251 -24.16690 -22.44450 -20.83928 -20.32640 -19.58143 -18.68417 -18.50991 -18.08263 -17.25361 -16.94329 -16.88915 -16.47922 -16.28936 -15.86596 -15.46803 -15.26591 -15.05836 -14.76574 -14.51364 -14.49382 -14.18663 -14.08106 -13.96486 -13.76009 -13.63261 -13.54392 -13.20618 -13.19221 -13.12662 -12.86778 -12.79448 -12.64053 -12.48551 -12.37789 -11.94177 -11.90289 -11.75395 -11.63375 -11.13636 -11.00951 -10.82980 -10.28179 -10.03498 -9.47839 -8.69824 -8.35286 -6.14554 1.16589 1.28977 1.41746 1.43584 1.46222 1.54721 1.55443 1.67069 1.94663 2.25097 2.28005 2.75806 2.98727 3.25246 3.36412 3.60334 3.82571 3.87376 3.88826 3.95745 4.06916 4.11972 4.18873 4.22290 4.37086 4.46508 4.55467 4.62522 4.70445 4.76384 4.80820 4.85483 4.89892 4.93606 4.99922 5.13003 5.23919 5.30800 5.32469 5.40193 5.44990 5.63354 6.17938 6.19183 6.26358 6.45671 6.97223 7.05381 7.12443 8.73828 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020692 B = 0.002253 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.841861 B =12425.116800 C =13092.071445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.003 4.003 3 H 0.187 0.813 4 C 0.238 3.762 5 N -0.478 5.478 6 C 0.517 3.483 7 O -0.590 6.590 8 N -0.596 5.596 9 C 0.092 3.908 10 C -0.132 4.132 11 C -0.121 4.121 12 C 0.126 3.874 13 H 0.057 0.943 14 N -0.604 5.604 15 C 0.066 3.934 16 C 0.529 3.471 17 O -0.571 6.571 18 C -0.120 4.120 19 S -0.162 6.162 20 C -0.543 4.543 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 1.001 2.999 25 H -0.259 1.259 26 H -0.280 1.280 27 H -0.262 1.262 28 C 0.111 3.889 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.052 0.948 35 H 0.118 0.882 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.053 0.947 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.314 18.155 8.490 35.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 H 0.204 0.796 4 C -0.081 4.081 5 N -0.154 5.154 6 C 0.304 3.696 7 O -0.470 6.470 8 N -0.328 5.328 9 C -0.028 4.028 10 C -0.171 4.171 11 C -0.160 4.160 12 C 0.021 3.979 13 H 0.075 0.925 14 N -0.338 5.338 15 C -0.075 4.075 16 C 0.316 3.684 17 O -0.449 6.449 18 C -0.271 4.271 19 S 0.065 5.935 20 C -0.691 4.691 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.822 3.178 25 H -0.183 1.183 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.013 4.013 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -27.094 16.893 11.171 33.827 hybrid contribution 0.224 -1.090 -2.033 2.318 sum -26.870 15.803 9.138 32.484 Atomic orbital electron populations 1.21908 0.86157 1.04417 1.07098 1.19283 1.01134 1.00848 0.81419 0.79621 1.29027 0.92293 0.92640 0.94110 1.81223 1.09787 1.09682 1.14726 1.20695 0.77559 0.86085 0.85217 1.90814 1.48482 1.21638 1.86062 1.48048 1.65842 1.13738 1.05156 1.22580 0.98766 0.76596 1.04817 1.22043 0.99181 1.01150 0.94694 1.21884 1.02670 0.91882 0.99521 1.21417 0.98118 0.94361 0.83965 0.92462 1.47819 1.09466 1.59352 1.17166 1.22173 0.90586 1.03417 0.91369 1.20251 0.82600 0.77536 0.87972 1.90686 1.47405 1.57733 1.49112 1.23353 1.01833 1.03912 0.97961 1.85686 1.07267 1.77047 1.23468 1.23149 0.99989 1.45058 1.00917 0.89675 1.26187 0.94067 0.95796 1.03336 1.70195 1.01469 1.44293 1.39005 0.84974 0.77665 0.78744 0.76428 1.18312 1.20547 1.18633 1.21795 0.98304 0.95323 0.85915 0.92806 0.88276 0.85898 0.86478 0.85536 0.92940 0.86402 0.92689 0.87981 0.90251 0.90893 0.87623 0.87415 0.87014 0.92035 0.92860 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.15 8.99 71.98 0.65 0.50 16 2 C 0.00 -0.03 2.25 -13.35 -0.03 -0.06 16 3 H 0.19 -0.31 6.45 -2.38 -0.02 -0.33 16 4 C 0.24 4.72 13.95 89.44 1.25 5.96 16 5 N -0.48 -13.37 18.54 20.00 0.37 -13.00 16 6 C 0.52 9.13 6.85 87.66 0.60 9.73 16 7 O -0.59 -18.70 15.56 -3.03 -0.05 -18.75 16 8 N -0.60 -7.10 2.97 -818.08 -2.43 -9.52 16 9 C 0.09 0.04 5.64 86.51 0.49 0.53 16 10 C -0.13 -0.65 6.10 30.82 0.19 -0.46 16 11 C -0.12 -1.38 5.14 30.62 0.16 -1.22 16 12 C 0.13 2.69 2.67 45.07 0.12 2.81 16 13 H 0.06 1.81 6.90 -2.39 -0.02 1.80 16 14 N -0.60 -15.23 2.77 -822.16 -2.27 -17.50 16 15 C 0.07 0.95 9.33 127.77 1.19 2.15 16 16 C 0.53 20.34 7.69 87.66 0.67 21.01 16 17 O -0.57 -28.10 15.19 -3.04 -0.05 -28.14 16 18 C -0.12 -4.82 4.71 71.24 0.34 -4.49 16 19 S -0.16 -9.24 20.57 -56.49 -1.16 -10.40 16 20 C -0.54 -31.31 9.50 67.95 0.65 -30.66 16 21 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 22 C 0.01 0.61 5.49 84.86 0.47 1.08 16 23 N -0.91 -57.17 13.22 21.65 0.29 -56.88 16 24 Si 1.00 43.84 29.55 68.60 2.03 45.86 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 28 C 0.11 1.95 5.79 86.36 0.50 2.45 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.12 -0.76 7.25 -2.39 -0.02 -0.78 16 32 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.13 -0.82 5.26 -2.39 -0.01 -0.83 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.10 0.54 7.72 -2.38 -0.02 0.52 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.18 6.44 -2.39 -0.02 1.16 16 40 H 0.11 0.78 6.34 -2.39 -0.02 0.77 16 41 H 0.11 3.94 7.40 -2.40 -0.02 3.92 16 42 H 0.11 3.98 8.11 -2.40 -0.02 3.96 16 43 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 44 H 0.05 1.47 7.00 -2.38 -0.02 1.46 16 45 H 0.11 1.15 6.48 -2.39 -0.02 1.14 16 Total: -1.00 -101.59 382.24 4.97 -96.62 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.01 Total: 2.39 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 7.23 Total: 9.33 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -4.04 Total: -96.91 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.09 Total: -46.89 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.16 Total: -10.40 kcal Total: -101.59 4.97 -96.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295803548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.833 kcal (2) G-P(sol) polarization free energy of solvation -101.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds