Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46941 * 2 1 4 4 C 1.47197 * 109.46925 * 240.00109 * 2 1 3 5 5 N 2.60800 * 109.47204 * 239.99989 * 2 1 3 6 6 C 1.50698 * 109.47128 * 119.99976 * 2 1 3 7 7 O 1.21282 * 119.99816 * 22.87592 * 6 2 1 8 8 N 1.34774 * 120.00388 * 202.87508 * 6 2 1 9 9 C 1.46926 * 120.62685 * 4.77807 * 8 6 2 10 10 C 1.52760 * 109.01065 * 233.58722 * 9 8 6 11 11 C 1.53042 * 109.37860 * 305.58693 * 10 9 8 12 12 C 1.53043 * 109.53569 * 61.24346 * 11 10 9 13 13 H 1.09005 * 109.49996 * 58.58613 * 12 11 10 14 14 N 1.46503 * 109.49473 * 178.68040 * 12 11 10 15 15 C 1.46496 * 120.00056 * 59.83698 * 14 12 11 16 16 C 1.34779 * 119.99771 * 239.83443 * 14 12 11 17 17 O 1.21273 * 120.00180 * 0.02562 * 16 14 12 18 18 C 1.50699 * 119.99683 * 180.02562 * 16 14 12 19 19 S 1.81003 * 109.46981 * 180.02562 * 18 16 14 20 20 C 1.76206 * 100.00160 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99549 * 359.97438 * 20 19 18 22 22 C 1.38794 * 119.99678 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00599 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99607 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47001 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.46982 * 119.99604 * 24 22 20 27 27 H 1.48504 * 109.46930 * 240.00069 * 24 22 20 28 28 C 1.46920 * 120.63468 * 185.06299 * 8 6 2 29 29 H 1.08998 * 109.47190 * 294.99543 * 1 2 3 30 30 H 1.09005 * 109.47429 * 54.99914 * 1 2 3 31 31 H 1.09006 * 109.47496 * 174.99517 * 1 2 3 32 32 H 1.08999 * 109.58957 * 353.42504 * 9 8 6 33 33 H 1.09001 * 109.58635 * 113.84569 * 9 8 6 34 34 H 1.08998 * 109.56376 * 185.55754 * 10 9 8 35 35 H 1.09002 * 109.38662 * 65.51628 * 10 9 8 36 36 H 1.09000 * 109.46518 * 301.21724 * 11 10 9 37 37 H 1.09005 * 109.45570 * 181.25425 * 11 10 9 38 38 H 1.09001 * 109.47147 * 90.00339 * 15 14 12 39 39 H 1.09001 * 109.47045 * 210.00066 * 15 14 12 40 40 H 1.08997 * 109.47056 * 329.99554 * 15 14 12 41 41 H 1.09005 * 109.47505 * 300.00125 * 18 16 14 42 42 H 1.08995 * 109.47479 * 60.00626 * 18 16 14 43 43 H 0.97002 * 120.00523 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.58709 * 246.15320 * 28 8 6 45 45 H 1.09002 * 109.58413 * 6.57788 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3994 -1.2294 -2.1294 6 6 2.0323 -0.7104 1.2304 7 8 1.3221 -1.5111 1.8008 8 7 3.2708 -0.4560 1.6971 9 6 4.1036 0.5857 1.0807 10 6 5.4522 -0.0191 0.6944 11 6 6.0812 -0.6829 1.9215 12 6 5.1700 -1.8076 2.4185 13 1 5.0238 -2.5366 1.6214 14 7 5.7878 -2.4629 3.5740 15 6 6.0892 -1.6887 4.7806 16 6 6.0789 -3.7780 3.5269 17 8 5.8299 -4.4188 2.5278 18 6 6.7140 -4.4522 4.7157 19 16 6.9794 -6.2039 4.3452 20 6 7.7092 -6.7299 5.8603 21 1 7.8623 -6.0211 6.6606 22 6 8.0882 -8.0550 6.0247 23 7 7.9021 -8.9188 5.0491 24 14 8.8626 -8.6125 7.6307 25 1 8.9619 -7.4579 8.5594 26 1 8.0215 -9.6711 8.2445 27 1 10.2206 -9.1513 7.3646 28 6 3.8162 -1.2191 2.8279 29 1 -0.3633 0.4342 0.9314 30 1 -0.3634 0.5895 -0.8418 31 1 -0.3634 -1.0238 -0.0897 32 1 3.6081 0.9697 0.1890 33 1 4.2604 1.3967 1.7919 34 1 6.1126 0.7662 0.3270 35 1 5.3038 -0.7648 -0.0867 36 1 6.2071 0.0582 2.7109 37 1 7.0536 -1.0956 1.6526 38 1 5.2322 -1.7164 5.4536 39 1 6.9576 -2.1181 5.2804 40 1 6.3022 -0.6557 4.5058 41 1 7.6711 -3.9783 4.9338 42 1 6.0569 -4.3589 5.5802 43 1 8.1674 -9.8447 5.1639 44 1 3.9490 -0.5584 3.6846 45 1 3.1310 -2.0257 3.0887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295803555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = -36.251855 kcal Electronic energy + Delta-G solvation = -27097.798171 eV Core-core repulsion = 23242.069258 eV Total energy + Delta-G solvation = -3855.728913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05479 -39.66283 -37.81013 -37.04853 -35.34363 -33.64672 -32.82973 -32.43102 -31.17450 -28.66064 -26.96257 -26.53082 -25.50486 -24.96791 -23.37475 -21.61904 -20.04096 -19.26851 -18.21904 -17.88069 -17.67872 -16.80106 -16.34454 -15.98127 -15.49768 -15.14846 -14.80957 -14.74496 -14.69157 -14.48316 -14.04986 -13.88250 -13.71993 -13.37027 -13.17849 -13.12378 -13.07245 -13.02976 -12.64199 -12.50226 -12.37438 -12.27605 -12.07403 -11.97435 -11.69537 -11.40024 -11.27886 -11.07541 -11.02882 -10.95935 -10.75619 -10.28011 -9.80422 -9.41573 -9.24163 -9.07590 -8.54361 -8.22412 -6.50608 -6.21726 -3.92577 1.75898 2.23210 2.26688 2.52788 2.94100 3.01297 3.21442 3.25602 3.30825 3.43151 3.58157 3.85646 4.19668 4.21104 4.29038 4.42088 4.44404 4.50666 4.62254 4.87525 4.95039 4.99813 5.02551 5.10625 5.13407 5.16143 5.23231 5.27880 5.38063 5.39871 5.51794 5.56872 5.64287 5.66316 5.69302 5.84257 5.90581 5.91262 6.01380 6.11251 6.58399 6.82139 7.02783 7.45353 7.59584 7.60998 8.35116 8.50540 9.23514 10.85744 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.002316 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.249868 B =12088.630998 C =12456.699956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.011 4.011 3 H 0.136 0.864 4 C 0.205 3.795 5 N -0.400 5.400 6 C 0.524 3.476 7 O -0.513 6.513 8 N -0.605 5.605 9 C 0.100 3.900 10 C -0.134 4.134 11 C -0.129 4.129 12 C 0.128 3.872 13 H 0.105 0.895 14 N -0.619 5.619 15 C 0.076 3.924 16 C 0.534 3.466 17 O -0.512 6.512 18 C -0.148 4.148 19 S -0.063 6.063 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.106 3.894 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 28.472 -5.751 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.036 4.036 3 H 0.154 0.846 4 C -0.114 4.114 5 N -0.075 5.075 6 C 0.309 3.691 7 O -0.386 6.386 8 N -0.339 5.339 9 C -0.022 4.022 10 C -0.173 4.173 11 C -0.168 4.168 12 C 0.023 3.977 13 H 0.123 0.877 14 N -0.355 5.355 15 C -0.067 4.067 16 C 0.322 3.678 17 O -0.386 6.386 18 C -0.299 4.299 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 C -0.018 4.018 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.808 26.066 -8.364 29.079 hybrid contribution 0.855 0.683 2.605 2.826 sum -8.953 26.749 -5.759 28.789 Atomic orbital electron populations 1.21688 0.88985 1.04725 1.03886 1.18972 0.99577 0.99637 0.85391 0.84640 1.28298 0.94229 0.94564 0.94338 1.81305 1.07591 1.07498 1.11142 1.19998 0.81542 0.82646 0.84935 1.90787 1.55190 1.34047 1.58623 1.48045 1.14567 1.37255 1.34066 1.21852 0.91794 0.90057 0.98519 1.21834 0.95852 1.01119 0.98518 1.21902 0.99655 0.97657 0.97537 1.21265 0.91210 0.95282 0.89965 0.87690 1.47811 1.63148 1.09089 1.15457 1.21794 1.01638 0.96317 0.86934 1.20417 0.77502 0.80660 0.89176 1.90705 1.51621 1.63108 1.33157 1.23547 1.02706 1.05187 0.98455 1.85459 1.80241 0.95155 1.22742 1.22885 1.46774 0.97559 1.00982 0.90874 1.25001 0.95470 0.95540 0.97634 1.70028 1.44782 1.03832 1.31600 0.86114 0.78793 0.78670 0.81892 1.19611 1.20550 1.20580 1.21990 0.95441 0.96628 0.87704 0.89868 0.90664 0.90496 0.89647 0.90182 0.89768 0.91089 0.91122 0.90649 0.92582 0.90400 0.91246 0.89175 0.89132 0.92221 0.90681 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 8.57 37.16 0.32 -0.34 16 2 C -0.01 -0.06 2.29 -94.56 -0.22 -0.28 16 3 H 0.14 0.21 6.39 -51.93 -0.33 -0.12 16 4 C 0.20 1.85 14.30 -20.76 -0.30 1.55 16 5 N -0.40 -4.87 18.54 42.15 0.78 -4.09 16 6 C 0.52 4.94 6.78 -10.99 -0.07 4.87 16 7 O -0.51 -6.97 15.60 5.56 0.09 -6.89 16 8 N -0.61 -4.98 2.98 -173.04 -0.52 -5.49 16 9 C 0.10 0.47 6.22 -3.93 -0.02 0.45 16 10 C -0.13 -0.85 6.07 -26.83 -0.16 -1.01 16 11 C -0.13 -1.07 5.12 -26.69 -0.14 -1.21 16 12 C 0.13 1.50 2.67 -67.81 -0.18 1.32 16 13 H 0.11 1.63 6.90 -51.93 -0.36 1.27 16 14 N -0.62 -8.31 2.76 -173.80 -0.48 -8.79 16 15 C 0.08 0.71 9.21 59.84 0.55 1.27 16 16 C 0.53 10.12 7.69 -10.98 -0.08 10.03 16 17 O -0.51 -11.91 15.19 5.56 0.08 -11.83 16 18 C -0.15 -2.99 4.71 36.01 0.17 -2.82 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 20 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 24 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.11 1.07 5.78 -3.72 -0.02 1.04 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 32 H 0.09 0.23 5.30 -51.93 -0.28 -0.04 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.45 6.71 -51.93 -0.35 0.10 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 40 H 0.07 0.45 6.45 -51.93 -0.33 0.12 16 41 H 0.09 1.66 7.40 -51.91 -0.38 1.27 16 42 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.07 0.60 7.51 -51.93 -0.39 0.21 16 45 H 0.10 1.31 7.04 -51.93 -0.37 0.95 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -38.74 383.53 -7.19 -45.94 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -6.47 Total: -3.45 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 0.04 Total: 1.94 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.52 Total: -43.99 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.17 Total: -18.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.74 -7.19 -45.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295803555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.684 kcal (2) G-P(sol) polarization free energy of solvation -38.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds